MS016832 (gene) Bitter gourd (TR) v1

Overview
NameMS016832
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmyrosinase-binding protein 2-like
Locationscaffold9_1: 324161 .. 324927 (+)
RNA-Seq ExpressionMS016832
SyntenyMS016832
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTTTCCTCACCATCCTCACTCCCGCCCTCGTCCTTCTCTCCGAAAATTCAAAATCACCGCCCCCGTCTTTCGATTCTCCCGGTAAGGACCCATTTGATTCTATATTTTGTTTCCCATATTTGATATTTTAAGTTTTGACAGTCGTTTCTGATTCTTTTATTCTCTCAAATTTTTACAGTGAAATAATTAATTTTTTTTAATAAACCATATGGCGAGTGTAGATTTGAACCGAAGAGTTGCCTGAAATAATCAAAATTAGTATGTTATATTTAGTTTTTTAAATATTTATTATGTATTTTATAGGTAAAAGAAATGATATAATAATAATTTTATTTATGTTTTAGGAAAAAAAAAACTGGAAATGAGACCGAAATCAGATTCTGTTGTTTCTGAATTTTGAATACAATTTCTTTAATAAATGGGATATGATGTTTGTAGTTTCTAGTGCTTTGTTTCTGATTTTTCTCTGCTTATTTTCTGTTTGGCAGATGGGAAAAATGGAGGGATTAATATGAGTAGGAAAGTTGTGGGGTTGACGAGAAAATATGAGATGTTGAAAGTTTTGGCCGAAGAACAGAAAGCGCCGACGGCGATTCCAATCCCGGTCACGGTACCGGTGCCGTCGCCGTCGCCGGCTCCGGCTCCGGACGCTGATTTTCCGGTTCGGAGGTTCATGGCTGGTGCTGGAAAAGTCATCTTGACAACATTAAAGGTCTTGAAAGAAGCG

mRNA sequence

ATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTTTCCTCACCATCCTCACTCCCGCCCTCGTCCTTCTCTCCGAAAATTCAAAATCACCGCCCCCGTCTTTCGATTCTCCCGATGGGAAAAATGGAGGGATTAATATGAGTAGGAAAGTTGTGGGGTTGACGAGAAAATATGAGATGTTGAAAGTTTTGGCCGAAGAACAGAAAGCGCCGACGGCGATTCCAATCCCGGTCACGGTACCGGTGCCGTCGCCGTCGCCGGCTCCGGCTCCGGACGCTGATTTTCCGGTTCGGAGGTTCATGGCTGGTGCTGGAAAAGTCATCTTGACAACATTAAAGGTCTTGAAAGAAGCG

Coding sequence (CDS)

ATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTTTCCTCACCATCCTCACTCCCGCCCTCGTCCTTCTCTCCGAAAATTCAAAATCACCGCCCCCGTCTTTCGATTCTCCCGATGGGAAAAATGGAGGGATTAATATGAGTAGGAAAGTTGTGGGGTTGACGAGAAAATATGAGATGTTGAAAGTTTTGGCCGAAGAACAGAAAGCGCCGACGGCGATTCCAATCCCGGTCACGGTACCGGTGCCGTCGCCGTCGCCGGCTCCGGCTCCGGACGCTGATTTTCCGGTTCGGAGGTTCATGGCTGGTGCTGGAAAAGTCATCTTGACAACATTAAAGGTCTTGAAAGAAGCG

Protein sequence

MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKYEMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA
Homology
[Close]
BLAST of MS016832 vs. NCBI nr
Match: XP_022144206.1 (uncharacterized protein LOC111013954 [Momordica charantia])

HSP 1 Score: 231.1 bits (588), Expect = 5.0e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120

[Close]
BLAST of MS016832 vs. NCBI nr
Match: XP_011649628.1 (uncharacterized protein LOC105434646 [Cucumis sativus] >KGN62609.1 hypothetical protein Csa_021820 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 5.2e-38
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DGKNGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLLSFESTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           +MLK+LAEEQ+AP  IP P+T P PSP+PAPA     PVRRFMA AG+VIL TLK LKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPTPAPA-----PVRRFMADAGEVILRTLKGLKEA 115

[Close]
BLAST of MS016832 vs. NCBI nr
Match: XP_008444727.1 (PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 uncharacterized protein E6C27_scaffold82G005650 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-37
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DG+NGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           +MLK+LAEEQ+AP  IP P+T P PSP+PA AP    PV RFMA A K+IL+TLK LKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

[Close]
BLAST of MS016832 vs. NCBI nr
Match: XP_023002554.1 (uncharacterized protein LOC111496365 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.7e-36
Identity = 87/117 (74.36%), Postives = 94/117 (80.34%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK+   S  SPDGK GGI MSRK+VGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVL 118
           EMLKVL EEQ +P AIP P+T P P+PS A  P    P+RRFMAGAGKVI+TTLK L
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPSTALPPGTAVPLRRFMAGAGKVIVTTLKGL 117

[Close]
BLAST of MS016832 vs. NCBI nr
Match: XP_038885597.1 (uncharacterized protein LOC120075920 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 91/120 (75.83%), Postives = 96/120 (80.00%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LS+NSK    SF S DGKNGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSDNSKPSSLSFKSTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           +MLKVLAEEQ AP AIP P+T   P+ SPAPA  A   VR+FMA  GKVILTTLK LKEA
Sbjct: 61  QMLKVLAEEQTAPAAIPTPIT--APALSPAPALGAAVSVRKFMADTGKVILTTLKGLKEA 118

[Close]
BLAST of MS016832 vs. ExPASy TrEMBL
Match: A0A6J1CSM4 (uncharacterized protein LOC111013954 OS=Momordica charantia OX=3673 GN=LOC111013954 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120

[Close]
BLAST of MS016832 vs. ExPASy TrEMBL
Match: A0A0A0LNM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361730 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DGKNGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLLSFESTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           +MLK+LAEEQ+AP  IP P+T P PSP+PAPA     PVRRFMA AG+VIL TLK LKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPTPAPA-----PVRRFMADAGEVILRTLKGLKEA 115

[Close]
BLAST of MS016832 vs. ExPASy TrEMBL
Match: A0A5A7VFX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005650 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DG+NGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           +MLK+LAEEQ+AP  IP P+T P PSP+PA AP    PV RFMA A K+IL+TLK LKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

[Close]
BLAST of MS016832 vs. ExPASy TrEMBL
Match: A0A1S3BAZ8 (uncharacterized protein LOC103487977 OS=Cucumis melo OX=3656 GN=LOC103487977 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DG+NGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120
           +MLK+LAEEQ+AP  IP P+T P PSP+PA AP    PV RFMA A K+IL+TLK LKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

[Close]
BLAST of MS016832 vs. ExPASy TrEMBL
Match: A0A6J1KQS2 (uncharacterized protein LOC111496365 OS=Cucurbita maxima OX=3661 GN=LOC111496365 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 87/117 (74.36%), Postives = 94/117 (80.34%), Query Frame = 0 

Query: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK+   S  SPDGK GGI MSRK+VGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVL 118
           EMLKVL EEQ +P AIP P+T P P+PS A  P    P+RRFMAGAGKVI+TTLK L
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPSTALPPGTAVPLRRFMAGAGKVIVTTLKGL 117

[Close]
BLAST of MS016832 vs. TAIR 10
Match: AT5G42785.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 0 

Query: 1  MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60
          M  RAYV+IFFFW+ LTI+TP LV  S++ K+ PP  +  + K    +  R+++G + + 
Sbjct: 1  MKGRAYVMIFFFWALLTIITPMLVSWSQSLKNLPPLSNDQEQKIKD-SGPRRMMGYSEEM 60

Query: 61 EMLKVLAEEQKAPTAIPIPVTVPVP 86
           + +      +    +  P   P P
Sbjct: 61 HLAQEFVSHVEEEKLMMEPSMAPTP 84

The following BLAST results are available for this feature:
BLAST of MS016832 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144206.15.0e-57100.00uncharacterized protein LOC111013954 [Momordica charantia][more]
XP_011649628.15.2e-3876.67uncharacterized protein LOC105434646 [Cucumis sativus] >KGN62609.1 hypothetical ... [more]
XP_008444727.12.6e-3774.17PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 unc... [more]
XP_023002554.13.7e-3674.36uncharacterized protein LOC111496365 [Cucurbita maxima][more]
XP_038885597.11.4e-3575.83uncharacterized protein LOC120075920 [Benincasa hispida][more]
BLAST of MS016832 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS016832 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CSM42.4e-57100.00uncharacterized protein LOC111013954 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0LNM82.5e-3876.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361730 PE=4 SV=1[more]
A0A5A7VFX01.3e-3774.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BAZ81.3e-3774.17uncharacterized protein LOC103487977 OS=Cucumis melo OX=3656 GN=LOC103487977 PE=... [more]
A0A6J1KQS21.8e-3674.36uncharacterized protein LOC111496365 OS=Cucurbita maxima OX=3661 GN=LOC111496365... [more]
BLAST of MS016832 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G42785.16.9e-0431.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..48
NoneNo IPR availablePANTHERPTHR38396TRANSMEMBRANE PROTEINcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016832.1MS016832.1mRNA