MS014116 (gene) Bitter gourd (TR) v1

Overview


Name	MS014116
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCT domain-containing protein
Location	scaffold5: 697414 .. 698612 (-)
RNA-Seq Expression	MS014116
Synteny	MS014116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTCTTCGTTTCCTCAATTCTACTCGGAGCTGCTTTATCCCAACAATTTTTCAGATGGAATGTTGGGAATTAGAAGCAATAATATGGAGTGGGCCGGAGGCGAGGAGGGTTTGATTCCTTCCTTCGATCAGACGACGGTGTCGCCGGTCCCCGACCACCCCGATGCCCTTCTCGCAATGCCTTATCCCGACCCCTACGGCTCAGTCTCCGACATGACCGTCCCGACATTGCCTGATCAGTTTAACATGGGTTTGTGTAGCATTCATAGTTTAGTCGGCGGCAGCCACCACCCTCCGGCCATGGCCGCCACCACTGCATGTGACTTCGGCGATGAGCTCTTCGGCTTCGTGCCTGATTTCAAGCCCCTTTACCACGACTCATGGGTAATTTGAACTCTCAATCTTAACTATCTTGCAGAAGCTTCTATATCTTTCAATTCTAAAAGTGTAGGAAAAATATCCTTTGTTTTTGATTTATTGGCTCCACTTTTTGTCTATATTGATTGGAAATTTGTATAGAAACCAAAAGGGCATTAAAAAATTACTATCATGCAGGTTACTCGAAGTAATGAAATGCATGGGGTGGAAGAGACCAATATTAAGGTGGCCAGCCGCTACTCAGAAGAAGAAAGGAAGGAGAGGATCCTCAGATATTTGAAAAAGAGAAACCAGAGAAATTTCAACAAAACCATCAAGGTGAAACTTTTTATCTCGAAATACAATTTTGAAAGTTCAGAAATTTATTAAAGTTTTTATTCGAAAAATTTAGAGACTAAACTTATAACTTAACCTTTTATATTTACAGTACGCATGTCGTAAAACCCTAGCGGATAGACGAACTCGAGTTCGAGGAAGGTTTGCCCGGAACAACGAACTGTGTGACCCGGAACTAATGGCTCTCAAAACCAACCAAATTAGTAGCCCCTCTCACAACCTTAAACAACAAAGAGAAACGGTGAGAATATCAAATTTTACAGTCTTATTTTACAAGAAATTTATAACCCTTTTCACTTATATGGCAAACCATCAGAAAAAAAGAAAAAAAAAAGATCTTTTTCAGATGAGTGGACCATTTTTCTTACCATATTTTGTTTGGCTTGTGTTTTCTTTTTGGACAGAATAAGGAAGAAGAAGAGAGCTGGCTGCAAGAGTTGGCAGCAAGTCTAATGTATTTACCTTATGTGACAAATTACAGTGGG

mRNA sequence

GCTTCTTCGTTTCCTCAATTCTACTCGGAGCTGCTTTATCCCAACAATTTTTCAGATGGAATGTTGGGAATTAGAAGCAATAATATGGAGTGGGCCGGAGGCGAGGAGGGTTTGATTCCTTCCTTCGATCAGACGACGGTGTCGCCGGTCCCCGACCACCCCGATGCCCTTCTCGCAATGCCTTATCCCGACCCCTACGGCTCAGTCTCCGACATGACCGTCCCGACATTGCCTGATCAGTTTAACATGGGTTTGTGTAGCATTCATAGTTTAGTCGGCGGCAGCCACCACCCTCCGGCCATGGCCGCCACCACTGCATGTGACTTCGGCGATGAGCTCTTCGGCTTCGTGCCTGATTTCAAGCCCCTTTACCACGACTCATGGGTTACTCGAAGTAATGAAATGCATGGGGTGGAAGAGACCAATATTAAGGTGGCCAGCCGCTACTCAGAAGAAGAAAGGAAGGAGAGGATCCTCAGATATTTGAAAAAGAGAAACCAGAGAAATTTCAACAAAACCATCAAGTACGCATGTCGTAAAACCCTAGCGGATAGACGAACTCGAGTTCGAGGAAGGTTTGCCCGGAACAACGAACTGTGTGACCCGGAACTAATGGCTCTCAAAACCAACCAAATTAGTAGCCCCTCTCACAACCTTAAACAACAAAGAGAAACGAATAAGGAAGAAGAAGAGAGCTGGCTGCAAGAGTTGGCAGCAAGTCTAATGTATTTACCTTATGTGACAAATTACAGTGGG

Coding sequence (CDS)

GCTTCTTCGTTTCCTCAATTCTACTCGGAGCTGCTTTATCCCAACAATTTTTCAGATGGAATGTTGGGAATTAGAAGCAATAATATGGAGTGGGCCGGAGGCGAGGAGGGTTTGATTCCTTCCTTCGATCAGACGACGGTGTCGCCGGTCCCCGACCACCCCGATGCCCTTCTCGCAATGCCTTATCCCGACCCCTACGGCTCAGTCTCCGACATGACCGTCCCGACATTGCCTGATCAGTTTAACATGGGTTTGTGTAGCATTCATAGTTTAGTCGGCGGCAGCCACCACCCTCCGGCCATGGCCGCCACCACTGCATGTGACTTCGGCGATGAGCTCTTCGGCTTCGTGCCTGATTTCAAGCCCCTTTACCACGACTCATGGGTTACTCGAAGTAATGAAATGCATGGGGTGGAAGAGACCAATATTAAGGTGGCCAGCCGCTACTCAGAAGAAGAAAGGAAGGAGAGGATCCTCAGATATTTGAAAAAGAGAAACCAGAGAAATTTCAACAAAACCATCAAGTACGCATGTCGTAAAACCCTAGCGGATAGACGAACTCGAGTTCGAGGAAGGTTTGCCCGGAACAACGAACTGTGTGACCCGGAACTAATGGCTCTCAAAACCAACCAAATTAGTAGCCCCTCTCACAACCTTAAACAACAAAGAGAAACGAATAAGGAAGAAGAAGAGAGCTGGCTGCAAGAGTTGGCAGCAAGTCTAATGTATTTACCTTATGTGACAAATTACAGTGGG

Protein sequence

ASSFPQFYSELLYPNNFSDGMLGIRSNNMEWAGGEEGLIPSFDQTTVSPVPDHPDALLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAATTACDFGDELFGFVPDFKPLYHDSWVTRSNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAASLMYLPYVTNYSG

Homology

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BLAST of MS014116 vs. NCBI nr
Match: XP_022149731.1 (uncharacterized protein LOC111018090 [Momordica charantia])

HSP 1 Score: 505.8 bits (1301), Expect = 2.2e-139
Identity = 248/252 (98.41%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   ASSFPQFYSELLYPNNFSDGMLGIRSNNMEWAGGEEGLIPSFDQTTVSPVPDHPDALLAM 60
           ASSFPQFYSELLYPNNFSDGMLGIRSNNME AGGEEGLIPSFDQTTVSPVPDHPDALLAM
Sbjct: 34  ASSFPQFYSELLYPNNFSDGMLGIRSNNMELAGGEEGLIPSFDQTTVSPVPDHPDALLAM 93

Query: 61  PYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAATTACDFGDELFGFVPDF 120
           PYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGG HHPPAMAATTACDFGDELF FVPDF
Sbjct: 94  PYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGRHHPPAMAATTACDFGDELFSFVPDF 153

Query: 121 KPLYHDSWVTRSNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRK 180
           KPLYHDSWVT+SNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRK
Sbjct: 154 KPLYHDSWVTQSNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRK 213

Query: 181 TLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAAS 240
           TLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAAS
Sbjct: 214 TLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAAS 273

Query: 241 LMYLPYVTNYSG 253
           LMYLPYVTNYSG
Sbjct: 274 LMYLPYVTNYSG 285

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BLAST of MS014116 vs. NCBI nr
Match: XP_038902616.1 (zinc finger protein CONSTANS-LIKE 1-like [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 1.1e-77
Identity = 170/269 (63.20%), Postives = 202/269 (75.09%), Query Frame = 0


Query: 2   SSFPQFYSELLYPNNFSD-----------GMLGIR---SNNMEWAGGEEGLIPSFDQTTV 61
           +SFP FYS+LLYPNN SD           GM  +R   +NN++++  EE  +PSFDQ TV
Sbjct: 2   ASFPHFYSDLLYPNNLSDLQSLLMAVGDTGMCDLRNNNNNNIDFSLREETFVPSFDQ-TV 61

Query: 62  SPVPDHPDA---LLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAAT 121
           SP     D    LL M YPD YGSVSDM VP+LP+   M    IHSL+  S++ P +  T
Sbjct: 62  SPEQSSSDTLSPLLTMQYPDLYGSVSDMAVPSLPEFNTMSTYDIHSLI--SNNQPQVPGT 121

Query: 122 TACDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERILRYLK 181
             C++ +E  GFVP+ KPLY D+W ++S  EM GVEETNIKVASRYSEEERKERI+RYLK
Sbjct: 122 --CNYSEEFLGFVPELKPLYRDTWGSQSRYEMQGVEETNIKVASRYSEEERKERIVRYLK 181

Query: 182 KRNQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPELMALKTNQISSPSHNL-KQ 241
           KRNQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD + + LKTN++++P+HNL KQ
Sbjct: 182 KRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTDEIPLKTNKLTTPTHNLIKQ 241

Query: 242 QRETNKEEEESWLQELAASLMYLPYVTNY 251
           + + NKEEEESWLQELAASLMYLPYVTNY
Sbjct: 242 RDQMNKEEEESWLQELAASLMYLPYVTNY 265

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BLAST of MS014116 vs. NCBI nr
Match: XP_004150045.2 (uncharacterized protein LOC101221095 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-72
Identity = 169/274 (61.68%), Postives = 192/274 (70.07%), Query Frame = 0


Query: 2   SSFP-QFYSELLYPNNFSD-----------GMLGIRSNNME-----WAGGEEGLIPSFDQ 61
           +SFP  FY +L YPNNFSD           GM GIR+N+       +   EE  + SFDQ
Sbjct: 2   ASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVSSFDQ 61

Query: 62  TTVSPVPDHPDA----LLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPA 121
            TVSP     D      L M +PD YG VSDMTVP+LP +FNM    IHSL+      P 
Sbjct: 62  -TVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLP-EFNMSTYDIHSLINCQPQVPG 121

Query: 122 MAATTACDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERIL 181
                 C++GD+L GFVP+ KPLY D+W  +S  E+H VEETNIKVASRYSEEERKERI+
Sbjct: 122 -----TCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIV 181

Query: 182 RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPE-LMALKTNQISSPSH 241
           RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD +  + LKTNQ S+P+H
Sbjct: 182 RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNH 241

Query: 242 NL-KQQRETNKEEEESWLQELAASLMYLPYVTNY 251
           NL KQ  +TNKEEEESWLQELA SLMYLPYV NY
Sbjct: 242 NLIKQIDQTNKEEEESWLQELATSLMYLPYVANY 268

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BLAST of MS014116 vs. NCBI nr
Match: KAG6570585.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.7 bits (709), Expect = 9.8e-71
Identity = 163/268 (60.82%), Postives = 189/268 (70.52%), Query Frame = 0


Query: 2   SSFPQFYSELLYPNNFSD-----------GMLGIR------SNNMEWAGGEEGLIPSFDQ 61
           +SFP FYS+LLYPNNFSD           G+ GIR      +NN+    GEE   P+ DQ
Sbjct: 2   ASFPHFYSDLLYPNNFSDLQSLLMVAGDPGIGGIRNNDDNNNNNINLPRGEETFDPTLDQ 61

Query: 62  TTVSPVPDHPDALLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAAT 121
             VS   D    LL MPYP       D+TVP+ P +FN G+  IHS++G     P     
Sbjct: 62  -MVSFESDTQSPLLTMPYP-------DLTVPSSP-EFNKGMYGIHSVIGNQPRVPG---- 121

Query: 122 TACDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERILRYLK 181
            +C++ DEL GFVPD KP Y + W T+S+ E+HGVEETNIKVASRYSEEERKERI+RYLK
Sbjct: 122 -SCNYDDELLGFVPDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLK 181

Query: 182 KRNQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPELMALKTNQISSPSHNLKQQ 241
           KRNQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD E+  LKTN +++PSHN K +
Sbjct: 182 KRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEI-PLKTNHLTAPSHNQKNK 241

Query: 242 RETNKEEEESWLQELAASLMYLPYVTNY 251
               +EEEESWLQELAASLMYLPYVTNY
Sbjct: 242 ----EEEEESWLQELAASLMYLPYVTNY 250

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BLAST of MS014116 vs. NCBI nr
Match: XP_023511907.1 (zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 4.9e-70
Identity = 162/270 (60.00%), Postives = 190/270 (70.37%), Query Frame = 0


Query: 2   SSFPQFYSELLYPNNFSD-----------GMLGIR-------SNNMEWAGGEEGLIPSFD 61
           +SFP FYS+LLYPNNFSD           G+ GIR       +NN++   GEE  +P+FD
Sbjct: 2   ASFPHFYSDLLYPNNFSDLQTLLMAAGDPGIGGIRNNNDDNNNNNIDLPRGEETFVPAFD 61

Query: 62  QTTVSPVPDHPDALLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAA 121
           +   S   D    LL MPYP       D+T+P+ P +FN G+  IHS++G     P    
Sbjct: 62  R-MASFESDTQSPLLTMPYP-------DLTLPSSP-EFNKGMYGIHSVIGNQPQVPG--- 121

Query: 122 TTACDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERILRYL 181
             +C++ DEL GFVPD KP Y + W  +S+ EMHGVEETNIKVASRYSEEERKERI+RYL
Sbjct: 122 --SCNYDDELLGFVPDLKPFYRNIWGPQSSYEMHGVEETNIKVASRYSEEERKERIVRYL 181

Query: 182 KKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPELMALKTNQISSPSHNLKQ 241
           KKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD E+  LK N +++PSHN   
Sbjct: 182 KKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEI-PLKINHLTAPSHN--- 241

Query: 242 QRETNK-EEEESWLQELAASLMYLPYVTNY 251
             +TNK EEEESWLQELAASLMYLPYVTNY
Sbjct: 242 --QTNKEEEEESWLQELAASLMYLPYVTNY 251

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BLAST of MS014116 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-05
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 146 ASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNELCDPELM 205
           A   S  +R+ R+LRY +K+  R F KTI+YA RK  A++R R++GRFA+  ++ +    
Sbjct: 278 AQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQ 337

Query: 206 ALKT 210
           A  T
Sbjct: 338 AFST 341

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BLAST of MS014116 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-05
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 139 EETNIKV-ASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNN 198
           E TN +  A + S  ER+ R+LRY +KR  R F KTI+YA RK  A+ R R++GRFA+  
Sbjct: 213 EMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 272

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BLAST of MS014116 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 5.7e-05
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 150 SEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNE 199
           S  +R+ R+LRY +KR  R F KTI+YA RK  A+ R R++GRFA+  E
Sbjct: 281 SSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE 329

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BLAST of MS014116 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.7e-05
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 153 ERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNE 199
           ER+ R++RY +KR  R F KTI+YA RK  A+ R R++GRFA+  +
Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 339

[Close]

BLAST of MS014116 vs. ExPASy Swiss-Prot
Match: Q9LKL2 (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=APRR1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 123 LYHDSWVTRSNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTL 182
           + H SW    N        N         + R+E +L++ +KRNQR F+K I+Y  RK L
Sbjct: 509 MVHHSWSPAGNPPSNEVRVN-------KLDRREEALLKFRRKRNQRCFDKKIRYVNRKRL 568

Query: 183 ADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEE 231
           A+RR RV+G+F R     + +L      Q  S  ++ +++ E  +EEE
Sbjct: 569 AERRPRVKGQFVRKMNGVNVDL----NGQPDSADYDDEEEEEEEEEEE 605

[Close]

BLAST of MS014116 vs. ExPASy TrEMBL
Match: A0A6J1D9A2 (uncharacterized protein LOC111018090 OS=Momordica charantia OX=3673 GN=LOC111018090 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.1e-139
Identity = 248/252 (98.41%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   ASSFPQFYSELLYPNNFSDGMLGIRSNNMEWAGGEEGLIPSFDQTTVSPVPDHPDALLAM 60
           ASSFPQFYSELLYPNNFSDGMLGIRSNNME AGGEEGLIPSFDQTTVSPVPDHPDALLAM
Sbjct: 34  ASSFPQFYSELLYPNNFSDGMLGIRSNNMELAGGEEGLIPSFDQTTVSPVPDHPDALLAM 93

Query: 61  PYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAATTACDFGDELFGFVPDF 120
           PYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGG HHPPAMAATTACDFGDELF FVPDF
Sbjct: 94  PYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGRHHPPAMAATTACDFGDELFSFVPDF 153

Query: 121 KPLYHDSWVTRSNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRK 180
           KPLYHDSWVT+SNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRK
Sbjct: 154 KPLYHDSWVTQSNEMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRK 213

Query: 181 TLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAAS 240
           TLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAAS
Sbjct: 214 TLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEESWLQELAAS 273

Query: 241 LMYLPYVTNYSG 253
           LMYLPYVTNYSG
Sbjct: 274 LMYLPYVTNYSG 285

[Close]

BLAST of MS014116 vs. ExPASy TrEMBL
Match: A0A0A0KGC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.7e-73
Identity = 169/274 (61.68%), Postives = 192/274 (70.07%), Query Frame = 0


Query: 2   SSFP-QFYSELLYPNNFSD-----------GMLGIRSNNME-----WAGGEEGLIPSFDQ 61
           +SFP  FY +L YPNNFSD           GM GIR+N+       +   EE  + SFDQ
Sbjct: 2   ASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVSSFDQ 61

Query: 62  TTVSPVPDHPDA----LLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPA 121
            TVSP     D      L M +PD YG VSDMTVP+LP +FNM    IHSL+      P 
Sbjct: 62  -TVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLP-EFNMSTYDIHSLINCQPQVPG 121

Query: 122 MAATTACDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERIL 181
                 C++GD+L GFVP+ KPLY D+W  +S  E+H VEETNIKVASRYSEEERKERI+
Sbjct: 122 -----TCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIV 181

Query: 182 RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPE-LMALKTNQISSPSH 241
           RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD +  + LKTNQ S+P+H
Sbjct: 182 RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNH 241

Query: 242 NL-KQQRETNKEEEESWLQELAASLMYLPYVTNY 251
           NL KQ  +TNKEEEESWLQELA SLMYLPYV NY
Sbjct: 242 NLIKQIDQTNKEEEESWLQELATSLMYLPYVANY 268

[Close]

BLAST of MS014116 vs. ExPASy TrEMBL
Match: A0A6J1JCW3 (uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 6.9e-70
Identity = 165/267 (61.80%), Postives = 190/267 (71.16%), Query Frame = 0


Query: 2   SSFPQFYSELLYPNNFSD-----------GMLGIR----SNNMEWAGGEEGLIPSFDQTT 61
           +SFP FYS+LLYPNNFSD            + GIR    +NN++   GEE  +PSFDQ  
Sbjct: 2   ASFPHFYSDLLYPNNFSDLQSLLMAAGDPRVGGIRNDNNNNNIDLPRGEETFVPSFDQ-M 61

Query: 62  VSPVPDHPDALLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAATTA 121
            S   D    LL MPYP       D+TVP+ P +FN G+  IHS+      PPA     +
Sbjct: 62  ASFESDTQSPLLTMPYP-------DLTVPSSP-EFNKGMYGIHSV--SDSQPPA-----S 121

Query: 122 CDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERILRYLKKR 181
           C++ DEL  FVP+ KP Y + W T+S+ EMHGVEETNIKVASRYSEEERKERI+RYLKKR
Sbjct: 122 CNYDDELLHFVPNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKR 181

Query: 182 NQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPELMALKTNQISSPSHNLKQQRE 241
           NQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD E+  LKTN +++PSHN     +
Sbjct: 182 NQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEI-PLKTNHLTAPSHN-----Q 241

Query: 242 TNK-EEEESWLQELAASLMYLPYVTNY 251
           TNK EEEESWLQELAASLMYLPYVTNY
Sbjct: 242 TNKEEEEESWLQELAASLMYLPYVTNY 246

[Close]

BLAST of MS014116 vs. ExPASy TrEMBL
Match: A0A6J1FX75 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 162/268 (60.45%), Postives = 188/268 (70.15%), Query Frame = 0


Query: 2   SSFPQFYSELLYPNNFSD-----------GMLGIR-----SNNMEWAGGEEGLIPSFDQT 61
           +SFP FYS+ LYPNNFSD           G+ GIR     +NN+    GEE  + + DQ 
Sbjct: 2   ASFPHFYSDHLYPNNFSDLQSLLMAAGDPGIGGIRNDDDNNNNINLPHGEETFVSTLDQ- 61

Query: 62  TVSPVPDHPDALLAMPYPDPYGSVSDMTVPTLPDQFNMGLCSIHSLVGGSHHPPAMAATT 121
             S   D    LL MPYP       D+TVP+ P +FN G+  IHS++G     P      
Sbjct: 62  MASFESDTQSPLLTMPYP-------DLTVPSSP-EFNKGMYGIHSVIGNQPRVPG----- 121

Query: 122 ACDFGDELFGFVPDFKPLYHDSWVTRSN-EMHGVEETNIKVASRYSEEERKERILRYLKK 181
           +C++ DEL GFVPD KP Y + W T+S+ E+HGVEETNIKVASRYSEEERKERI+RYLKK
Sbjct: 122 SCNYDDELLGFVPDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKK 181

Query: 182 RNQRNFNKTIKYACRKTLADRRTRVRGRFAR-NNELCDPELMALKTNQISSPSHNLKQQR 241
           RNQRNFNKTIKYACRKTLADRRTRVRGRFAR NNELCD E+  LKTN +++PSHN     
Sbjct: 182 RNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEI-HLKTNHLTAPSHN----- 241

Query: 242 ETNK-EEEESWLQELAASLMYLPYVTNY 251
           +TNK EEEESWLQELAASLMYLPYVTNY
Sbjct: 242 QTNKEEEEESWLQELAASLMYLPYVTNY 249

[Close]

BLAST of MS014116 vs. ExPASy TrEMBL
Match: A0A6J1FUW6 (zinc finger protein CONSTANS-LIKE 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 4.8e-63
Identity = 148/239 (61.92%), Postives = 172/239 (71.97%), Query Frame = 0


Query: 20  GMLGIR-----SNNMEWAGGEEGLIPSFDQTTVSPVPDHPDALLAMPYPDPYGSVSDMTV 79
           G+ GIR     +NN+    GEE  + + DQ   S   D    LL MPYP       D+TV
Sbjct: 7   GIGGIRNDDDNNNNINLPHGEETFVSTLDQ-MASFESDTQSPLLTMPYP-------DLTV 66

Query: 80  PTLPDQFNMGLCSIHSLVGGSHHPPAMAATTACDFGDELFGFVPDFKPLYHDSWVTRSN- 139
           P+ P +FN G+  IHS++G     P      +C++ DEL GFVPD KP Y + W T+S+ 
Sbjct: 67  PSSP-EFNKGMYGIHSVIGNQPRVPG-----SCNYDDELLGFVPDLKPFYRNIWGTQSSY 126

Query: 140 EMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRF 199
           E+HGVEETNIKVASRYSEEERKERI+RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRF
Sbjct: 127 ELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRF 186

Query: 200 AR-NNELCDPELMALKTNQISSPSHNLKQQRETNK-EEEESWLQELAASLMYLPYVTNY 251
           AR NNELCD E+  LKTN +++PSHN     +TNK EEEESWLQELAASLMYLPYVTNY
Sbjct: 187 ARNNNELCDTEI-HLKTNHLTAPSHN-----QTNKEEEEESWLQELAASLMYLPYVTNY 225

[Close]

BLAST of MS014116 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 115.2 bits (287), Expect = 7.9e-26
Identity = 94/270 (34.81%), Postives = 134/270 (49.63%), Query Frame = 0


Query: 1   ASSFPQFYSELLYPNNFSDGMLGIRSNNMEWAGGEEGLIPSFDQTTVSPVPD-------- 60
           ASS PQFY++      FS         + ++ G      P  D +  S + D        
Sbjct: 2   ASSLPQFYADF---TTFS------CETSSQFHGSSS--CPDVDSSLSSYLDDCYGSFNTS 61

Query: 61  -HPDALLAMPYPDPYGSVSDMTVPTLPDQFNMGLC--SIHSLVGGSHHPPAMAATTACDF 120
            +P+++     P  +G +SD++VP   + +       + H   GG H             
Sbjct: 62  SNPESIFV---PQVFG-ISDVSVPEYNNYYQKMSVNNATHYFHGGDH------------- 121

Query: 121 GDELFGFVPDFKPLYHDSWVTRS--NEMHGVE-ETNIKVASRYSEEERKERILRYLKKRN 180
             E +GF P+ KPL+  +   +S  N   G++ E N KV  RYS EERK+RI+RYLKK+N
Sbjct: 122 -QEYYGFSPEIKPLFRPATGEQSWGNSEGGIQAEPNTKV-GRYSVEERKDRIMRYLKKKN 181

Query: 181 QRNFNKTIKYACRKTLADRRTRVRGRFARNNELCDPELMALKTNQISSPSHNLKQQRETN 240
           QRNFNKTIKY CRKTLADRR RVRGRFARNN+ C+ +          S +HN   ++E +
Sbjct: 182 QRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQ-------PHMSKNHNNHSEKEED 234

Query: 241 -----------KEEEESWLQELAASLMYLP 246
                       E ++ WL E  ++L+  P
Sbjct: 242 MFSGSDDYLIQMEHDDGWLHEAMSNLIPFP 234

[Close]

BLAST of MS014116 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 134 EMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRF 193
           +++G+E++ +    + S E+RKE+I RY+KKRN+RNFNK IKYACRKTLAD R RVRGRF
Sbjct: 291 DINGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRF 350

Query: 194 ARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEE 232
           A+N+E  +P        Q  S  H+ + + +   ++EE
Sbjct: 351 AKNDEFGEP------NRQAFSSHHDDEDEDDMGVKDEE 382

[Close]

BLAST of MS014116 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 134 EMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRF 193
           +++G+E++ +    + S E+RKE+I RY+KKRN+RNFNK IKYACRKTLAD R RVRGRF
Sbjct: 290 DINGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRF 349

Query: 194 ARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEE 232
           A+N+E  +P        Q  S  H+ + + +   ++EE
Sbjct: 350 AKNDEFGEP------NRQAFSSHHDDEDEDDMGVKDEE 381

[Close]

BLAST of MS014116 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-16
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 139 EETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNE 198
           EE N KV  RYS EERKE+I +Y  KRNQRNF KTIKYACRKTLAD R R+RGRFARN+E
Sbjct: 201 EEQNFKV-GRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDE 260

Query: 199 LCD 202
           + +
Sbjct: 261 VVE 262

[Close]

BLAST of MS014116 vs. TAIR 10
Match: AT1G04500.1 (CCT motif family protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-15
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 134 EMHGVEETNIKVASRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRF 193
           E+ G+++ +     + S E+RKE+I RY+KKRN+RNF+K IKYACRKTLAD R RVRGRF
Sbjct: 268 EITGLDDPSFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRF 327

Query: 194 ARNNELCDPELMALKTNQISSPSHNLKQQRETNKEEEE 232
           A+N+E  +P       N+ +  SH+     +   +EEE
Sbjct: 328 AKNDEFGEP-------NRQACSSHHEDDDDDVGVKEEE 358

The following BLAST results are available for this feature:

BLAST of MS014116 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149731.1	2.2e-139	98.41	uncharacterized protein LOC111018090 [Momordica charantia]	[more]
XP_038902616.1	1.1e-77	63.20	zinc finger protein CONSTANS-LIKE 1-like [Benincasa hispida]	[more]
XP_004150045.2	1.8e-72	61.68	uncharacterized protein LOC101221095 [Cucumis sativus]	[more]
KAG6570585.1	9.8e-71	60.82	Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023511907.1	4.9e-70	60.00	zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS014116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O50055	1.5e-05	40.63	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
Q9SK53	2.6e-05	47.54	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q9FHH8	5.7e-05	51.02	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]
Q940T9	9.7e-05	50.00	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q9LKL2	1.3e-04	32.41	Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of MS014116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9A2	1.1e-139	98.41	uncharacterized protein LOC111018090 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0KGC0	8.7e-73	61.68	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV...	[more]
A0A6J1JCW3	6.9e-70	61.80	uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882...	[more]
A0A6J1FX75	1.2e-69	60.45	zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1FUW6	4.8e-63	61.92	zinc finger protein CONSTANS-LIKE 1-like isoform X2 OS=Cucurbita moschata OX=366...	[more]

BLAST of MS014116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12890.1	7.9e-26	34.81	activator of spomin::LUC2	[more]
AT2G33350.1	1.1e-16	46.94	CCT motif family protein	[more]
AT2G33350.2	1.1e-16	46.94	CCT motif family protein	[more]
AT5G41380.1	2.5e-16	71.43	CCT motif family protein	[more]
AT1G04500.1	1.3e-15	46.94	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 154..196 e-value: 6.6E-17 score: 61.3
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 154..196 score: 14.951497
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..230
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 3..248
None	No IPR available	PANTHER	PTHR31717:SF56	ACTIVATOR OF SPOMIN::LUC2	coord: 3..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014116.1	MS014116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding