MS014043 (gene) Bitter gourd (TR) v1

Overview
NameMS014043
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold5: 183537 .. 183746 (-)
RNA-Seq ExpressionMS014043
SyntenyMS014043
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATTGAGGGAGGCCGTAAGCGCAATTGATCTGATCAATCCCTCTCGTTCCACGCTCGAAGAGAGCGTCTCATCCTCCGCGTCCATTCCGCTTGAGGACGTAATTTCGGACCTCAAAGACCTCGATTGGCTAGAATGCTGTGTCACGTCGGTTGTTACATTCAGTTCGCGGAGCCAGAATAGCTCCAGTCCGAGTCCGGATCACCAGGAG

mRNA sequence

GTATTGAGGGAGGCCGTAAGCGCAATTGATCTGATCAATCCCTCTCGTTCCACGCTCGAAGAGAGCGTCTCATCCTCCGCGTCCATTCCGCTTGAGGACGTAATTTCGGACCTCAAAGACCTCGATTGGCTAGAATGCTGTGTCACGTCGGTTGTTACATTCAGTTCGCGGAGCCAGAATAGCTCCAGTCCGAGTCCGGATCACCAGGAG

Coding sequence (CDS)

GTATTGAGGGAGGCCGTAAGCGCAATTGATCTGATCAATCCCTCTCGTTCCACGCTCGAAGAGAGCGTCTCATCCTCCGCGTCCATTCCGCTTGAGGACGTAATTTCGGACCTCAAAGACCTCGATTGGCTAGAATGCTGTGTCACGTCGGTTGTTACATTCAGTTCGCGGAGCCAGAATAGCTCCAGTCCGAGTCCGGATCACCAGGAG

Protein sequence

VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQNSSSPSPDHQE
Homology
BLAST of MS014043 vs. NCBI nr
Match: XP_022149635.1 (uncharacterized protein LOC111018022 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECC TSVVTFSSRSQN
Sbjct: 49  VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCATSVVTFSSRSQN 108

Query: 61  SSSPSPDHQE 71
           SSSPSPDHQE
Sbjct: 109 SSSPSPDHQE 118

BLAST of MS014043 vs. NCBI nr
Match: XP_038902525.1 (uncharacterized protein LOC120089183 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           VL +AV+ IDLIN SRSTL+ES+SSSA+IPLE VISDL++L+W ECCVTSV+ F+S  QN
Sbjct: 60  VLTDAVNTIDLINLSRSTLKESISSSATIPLEAVISDLENLEWQECCVTSVLNFNSWKQN 119

Query: 61  SSSPSPDHQE 71
           +S PSPDHQ+
Sbjct: 120 NSDPSPDHQK 129

BLAST of MS014043 vs. NCBI nr
Match: XP_022986041.1 (uncharacterized protein LOC111483895 [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 9.5e-16
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           V++EAV  I+L+N SRSTL+ES+SSSASI LEDVISDLK+L+W EC VTSV+ FSS  QN
Sbjct: 59  VVKEAVGTINLVNLSRSTLKESISSSASITLEDVISDLKNLEWQECSVTSVLNFSSWKQN 118

Query: 61  SSSPSPDHQE 71
           +S PSPD QE
Sbjct: 119 NSDPSPDRQE 128

BLAST of MS014043 vs. NCBI nr
Match: XP_023512485.1 (uncharacterized protein LOC111777222 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 3.6e-15
Identity = 47/70 (67.14%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           V+++AV  I+L+N SRSTL+ES+SSSASI LEDVISDLK+L+W EC VTSV+ FSS +QN
Sbjct: 59  VVKDAVGTINLVNLSRSTLKESISSSASITLEDVISDLKNLEWQECSVTSVLNFSSWNQN 118

Query: 61  SSSPSPDHQE 71
           +S PSPD +E
Sbjct: 119 NSDPSPDREE 128

BLAST of MS014043 vs. NCBI nr
Match: XP_022944661.1 (uncharacterized protein LOC111449050 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           V+++AV  I+L+N SRSTL+ES+SSSASI LEDVISDLK+L+W EC VTSV+ FSS  QN
Sbjct: 59  VVKDAVGTINLVNLSRSTLKESISSSASITLEDVISDLKNLEWQECSVTSVLNFSSWKQN 118

Query: 61  SSSPSPDHQE 71
           +S  SPD QE
Sbjct: 119 NSDTSPDRQE 128

BLAST of MS014043 vs. ExPASy TrEMBL
Match: A0A6J1D6A0 (uncharacterized protein LOC111018022 OS=Momordica charantia OX=3673 GN=LOC111018022 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECC TSVVTFSSRSQN
Sbjct: 49  VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCATSVVTFSSRSQN 108

Query: 61  SSSPSPDHQE 71
           SSSPSPDHQE
Sbjct: 109 SSSPSPDHQE 118

BLAST of MS014043 vs. ExPASy TrEMBL
Match: A0A6J1J9Y9 (uncharacterized protein LOC111483895 OS=Cucurbita maxima OX=3661 GN=LOC111483895 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-16
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           V++EAV  I+L+N SRSTL+ES+SSSASI LEDVISDLK+L+W EC VTSV+ FSS  QN
Sbjct: 59  VVKEAVGTINLVNLSRSTLKESISSSASITLEDVISDLKNLEWQECSVTSVLNFSSWKQN 118

Query: 61  SSSPSPDHQE 71
           +S PSPD QE
Sbjct: 119 NSDPSPDRQE 128

BLAST of MS014043 vs. ExPASy TrEMBL
Match: A0A6J1FV08 (uncharacterized protein LOC111449050 OS=Cucurbita moschata OX=3662 GN=LOC111449050 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.7e-15
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           V+++AV  I+L+N SRSTL+ES+SSSASI LEDVISDLK+L+W EC VTSV+ FSS  QN
Sbjct: 59  VVKDAVGTINLVNLSRSTLKESISSSASITLEDVISDLKNLEWQECSVTSVLNFSSWKQN 118

Query: 61  SSSPSPDHQE 71
           +S  SPD QE
Sbjct: 119 NSDTSPDRQE 128

BLAST of MS014043 vs. ExPASy TrEMBL
Match: A0A6A1VCA4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G013192 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.4e-10
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSRSQN 60
           VL +AV  +DL++PSRSTL ESVSS   + LEDVI+DL  L+W ECCVTS+ T  S + +
Sbjct: 60  VLTDAVKTLDLVDPSRSTLNESVSSLEFVALEDVIADLNHLNWQECCVTSIQTLKSWNHS 119

Query: 61  SSSPSPD 68
            S+P P+
Sbjct: 120 VSAPVPN 126

BLAST of MS014043 vs. ExPASy TrEMBL
Match: A0A1Q3AWN3 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03687 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLEESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSS 57
           VL +A  A+DLI+PSRSTL+ES+SS A + L+DV++DL +L+W EC VTS+ TF+S
Sbjct: 52  VLTDATEALDLIDPSRSTLKESISSCACVTLDDVVADLNELEWQECSVTSIQTFNS 107

BLAST of MS014043 vs. TAIR 10
Match: AT1G06320.1 (unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 1   VLREAVSAIDLINPSRSTLE---ESVSSSASIPLEDVISDLKDLDWLECCVTSVVTFSSR 60
           ++ EAV ++DL++ SRSTL+   +S  SS+S+ L++VISD++ L W ECC TS+   +S+
Sbjct: 50  IVEEAVDSLDLLDLSRSTLKQVTDSSPSSSSLTLDEVISDIEALKWQECCFTSLQIINSQ 109

Query: 61  SQNSSSPSPDHQE 71
               S  S   Q+
Sbjct: 110 ETTPSEISKPKQK 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149635.13.2e-2798.57uncharacterized protein LOC111018022 [Momordica charantia][more]
XP_038902525.11.1e-1670.00uncharacterized protein LOC120089183 [Benincasa hispida][more]
XP_022986041.19.5e-1670.00uncharacterized protein LOC111483895 [Cucurbita maxima][more]
XP_023512485.13.6e-1567.14uncharacterized protein LOC111777222 [Cucurbita pepo subsp. pepo][more]
XP_022944661.11.8e-1467.14uncharacterized protein LOC111449050 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D6A01.5e-2798.57uncharacterized protein LOC111018022 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1J9Y94.6e-1670.00uncharacterized protein LOC111483895 OS=Cucurbita maxima OX=3661 GN=LOC111483895... [more]
A0A6J1FV088.7e-1567.14uncharacterized protein LOC111449050 OS=Cucurbita moschata OX=3662 GN=LOC1114490... [more]
A0A6A1VCA48.4e-1055.22Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G013192 PE=4 SV=1[more]
A0A1Q3AWN34.2e-0958.93Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03687 PE=4... [more]
Match NameE-valueIdentityDescription
AT1G06320.12.3e-0741.10unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35096:SF8BNAA08G28570D PROTEINcoord: 1..68
NoneNo IPR availablePANTHERPTHR35096BNAA08G28570D PROTEINcoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014043.1MS014043.1mRNA