MS013997 (gene) Bitter gourd (TR) v1

Overview


Name	MS013997
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA polymerase, beta-like region
Location	scaffold607: 1517320 .. 1517628 (-)
RNA-Seq Expression	MS013997
Synteny	MS013997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACGGCTTCAGAAGGCATTGTGGATGGATATTGGTGTTGACTACACAAACATCGCAGCCGTAGACCCAGAGAGAAGAGCAATCGAATCCGCAAACAGCGCAATTTCCAGACGGCACTTTCTTGAGCTTCAGCTTATGGGTGTGGTCTATGACGTGGCGGACCTCCTCGGGGAGCTGGGTGCAGAGTGGGTGCACGTCGAAGCCGCAGTCCTGGCACCGGTACAGCATGCCGCCGATGGGTCCGCGGCAGACGTCGCAGATCCGACGCTCCGTACTAGGCGCCAGAGTCAGGGGGTGGCTGTGGAGGAA

mRNA sequence

GTACGGCTTCAGAAGGCATTGTGGATGGATATTGGTGTTGACTACACAAACATCGCAGCCGTAGACCCAGAGAGAAGAGCAATCGAATCCGCAAACAGCGCAATTTCCAGACGGCACTTTCTTGAGCTTCAGCTTATGGGTGTGGTCTATGACGTGGCGGACCTCCTCGGGGAGCTGGGTGCAGAGTGGGTGCACGTCGAAGCCGCAGTCCTGGCACCGGTACAGCATGCCGCCGATGGGTCCGCGGCAGACGTCGCAGATCCGACGCTCCGTACTAGGCGCCAGAGTCAGGGGGTGGCTGTGGAGGAA

Coding sequence (CDS)

GTACGGCTTCAGAAGGCATTGTGGATGGATATTGGTGTTGACTACACAAACATCGCAGCCGTAGACCCAGAGAGAAGAGCAATCGAATCCGCAAACAGCGCAATTTCCAGACGGCACTTTCTTGAGCTTCAGCTTATGGGTGTGGTCTATGACGTGGCGGACCTCCTCGGGGAGCTGGGTGCAGAGTGGGTGCACGTCGAAGCCGCAGTCCTGGCACCGGTACAGCATGCCGCCGATGGGTCCGCGGCAGACGTCGCAGATCCGACGCTCCGTACTAGGCGCCAGAGTCAGGGGGTGGCTGTGGAGGAA

Protein sequence

VRLQKALWMDIGVDYTNIAAVDPERRAIESANSAISRRHFLELQLMGVVYDVADLLGELGAEWVHVEAAVLAPVQHAADGSAADVADPTLRTRRQSQGVAVEE

Homology

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BLAST of MS013997 vs. ExPASy TrEMBL
Match: A0A0A0KXM9 (DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.4e-14
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   VRLQKALWMDIGVDYTNIAAVDPERRAIESANSAISRRHFLELQLMGVVYDVADLLGELG 60
           VRL+ A  M+I  D TN+AA++PERR I  AN A +R    E + M  V +VA+LL ELG
Sbjct: 52  VRLENAFGMNI--DSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELG 111

Query: 61  AEWVHVEAAVLAPVQHAADGSAADVADPTLRTRRQSQGVAVEE 104
           A+W+ +E AV+A V+HA DG  AD+A   +    QS+ V VE+
Sbjct: 112 AKWMDIEVAVIAAVEHAVDGFTADIAAAMVHLVDQSKAVGVEK 152

The following BLAST results are available for this feature:

BLAST of MS013997 vs.


Match Name	E-value	Identity	Description

BLAST of MS013997 vs.


Match Name	E-value	Identity	Description

BLAST of MS013997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM9	6.4e-14	47.57	DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4...	[more]

BLAST of MS013997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013997.1	MS013997.1	mRNA