MS013877 (gene) Bitter gourd (TR) v1

Overview
NameMS013877
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAspartate aminotransferase
Locationscaffold607: 518741 .. 518998 (-)
RNA-Seq ExpressionMS013877
SyntenyMS013877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGTTGGAATGTTTTGCTATTCTGGATTAAACTGTGAGCAGATTGATCAGCTGGCCAGGGACTTTCATATATACATGACCAGGGATGGACGTATGAGGTACCTTTATAACCTTATAAAGCTGTATTCAAAAAATTGTTGCTTTCTTCCCACAAAAATGTTCACTTTTCATTGTAATCTTTGGGGCAGCATGGCCGGTGTGACGACGAGAAATGTGAGTTATTTAGCAGATGCAATGCATCAAGTCAGCAATTACGAT

mRNA sequence

CAGGTTGGAATGTTTTGCTATTCTGGATTAAACTGTGAGCAGATTGATCAGCTGGCCAGGGACTTTCATATATACATGACCAGGGATGGACGTATGAGCATGGCCGGTGTGACGACGAGAAATGTGAGTTATTTAGCAGATGCAATGCATCAAGTCAGCAATTACGAT

Coding sequence (CDS)

CAGGTTGGAATGTTTTGCTATTCTGGATTAAACTGTGAGCAGATTGATCAGCTGGCCAGGGACTTTCATATATACATGACCAGGGATGGACGTATGAGCATGGCCGGTGTGACGACGAGAAATGTGAGTTATTTAGCAGATGCAATGCATCAAGTCAGCAATTACGAT

Protein sequence

QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD
Homology
[Close]
BLAST of MS013877 vs. NCBI nr
Match: XP_038882100.1 (aspartate aminotransferase, mitochondrial-like [Benincasa hispida] >XP_038882101.1 aspartate aminotransferase, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLA+AMHQVS+YD
Sbjct: 391 QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLAEAMHQVSSYD 446

[Close]
BLAST of MS013877 vs. NCBI nr
Match: XP_022950910.1 (aspartate aminotransferase, mitochondrial-like [Cucurbita moschata] >XP_022950911.1 aspartate aminotransferase, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQIDQLA DFHIYMTRDGRMSMAGVTTRNVSY+A AMHQVSNYD
Sbjct: 367 QVGMFCYSGLNCEQIDQLATDFHIYMTRDGRMSMAGVTTRNVSYIASAMHQVSNYD 422

[Close]
BLAST of MS013877 vs. NCBI nr
Match: XP_022978180.1 (aspartate aminotransferase, mitochondrial-like [Cucurbita maxima] >XP_022978181.1 aspartate aminotransferase, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQIDQLA DFHIYMTRDGRMSMAGVTTRNVSY+A AMHQVSNYD
Sbjct: 367 QVGMFCYSGLNCEQIDQLATDFHIYMTRDGRMSMAGVTTRNVSYIASAMHQVSNYD 422

[Close]
BLAST of MS013877 vs. NCBI nr
Match: XP_023544199.1 (aspartate aminotransferase, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023544200.1 aspartate aminotransferase, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQIDQLA DFHIYMTRDGRMSMAGVTTRNVSY+A AMHQVSNYD
Sbjct: 367 QVGMFCYSGLNCEQIDQLATDFHIYMTRDGRMSMAGVTTRNVSYIASAMHQVSNYD 422

[Close]
BLAST of MS013877 vs. NCBI nr
Match: XP_022144116.1 (aspartate aminotransferase, mitochondrial-like [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQID+LAR+FHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS YD
Sbjct: 367 QVGMFCYSGLNCEQIDELARNFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSYYD 422

[Close]
BLAST of MS013877 vs. ExPASy Swiss-Prot
Match: P46643 (Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ASP1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.1e-16
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFCYSGL  EQ+D+L  ++HIYMTR+GR+SMAGVTT NV YLA+A+H+V+
Sbjct: 375 QIGMFCYSGLTPEQVDRLTSEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVT 427

[Close]
BLAST of MS013877 vs. ExPASy Swiss-Prot
Match: P12344 (Aspartate aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=GOT2 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-14
Identity = 33/53 (62.26%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFCY+GL  EQ+++L ++F IYMT+DGR+S+AGVT+ NV+YLA A+HQV+
Sbjct: 377 QIGMFCYTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAIHQVT 429

[Close]
BLAST of MS013877 vs. ExPASy Swiss-Prot
Match: P08907 (Aspartate aminotransferase, mitochondrial OS=Equus caballus OX=9796 GN=GOT2 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.7e-14
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFC++GL  EQ+++L ++F IYMT+DGR+S+AGVT+ NV YLA A+HQV+
Sbjct: 348 QIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQVT 400

[Close]
BLAST of MS013877 vs. ExPASy Swiss-Prot
Match: P00505 (Aspartate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=GOT2 PE=1 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 9.7e-14
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFC++GL  EQ+++L ++F IYMT+DGR+S+AGVT+ NV YLA A+HQV+
Sbjct: 377 QIGMFCFTGLKPEQVERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVT 429

[Close]
BLAST of MS013877 vs. ExPASy Swiss-Prot
Match: Q4R559 (Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis OX=9541 GN=GOT2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.7e-14
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFC++GL  EQ+++L ++F IYMT+DGR+S+AGVT+ NV YLA A+HQV+
Sbjct: 377 QIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQVT 429

[Close]
BLAST of MS013877 vs. ExPASy TrEMBL
Match: A0A6J1IPC4 (Aspartate aminotransferase OS=Cucurbita maxima OX=3661 GN=LOC111478240 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.1e-23
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQIDQLA DFHIYMTRDGRMSMAGVTTRNVSY+A AMHQVSNYD
Sbjct: 367 QVGMFCYSGLNCEQIDQLATDFHIYMTRDGRMSMAGVTTRNVSYIASAMHQVSNYD 422

[Close]
BLAST of MS013877 vs. ExPASy TrEMBL
Match: A0A6J1GG44 (Aspartate aminotransferase OS=Cucurbita moschata OX=3662 GN=LOC111453864 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.1e-23
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQIDQLA DFHIYMTRDGRMSMAGVTTRNVSY+A AMHQVSNYD
Sbjct: 367 QVGMFCYSGLNCEQIDQLATDFHIYMTRDGRMSMAGVTTRNVSYIASAMHQVSNYD 422

[Close]
BLAST of MS013877 vs. ExPASy TrEMBL
Match: A0A6J1CSC6 (Aspartate aminotransferase OS=Momordica charantia OX=3673 GN=LOC111013883 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLNCEQID+LAR+FHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS YD
Sbjct: 367 QVGMFCYSGLNCEQIDELARNFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSYYD 422

[Close]
BLAST of MS013877 vs. ExPASy TrEMBL
Match: A0A5D3BH80 (Aspartate aminotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00240 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLN EQIDQLARDFHIYMTRDGR+SMAGVTTRNVSYLA+AMHQVS+YD
Sbjct: 386 QVGMFCYSGLNYEQIDQLARDFHIYMTRDGRISMAGVTTRNVSYLAEAMHQVSSYD 441

[Close]
BLAST of MS013877 vs. ExPASy TrEMBL
Match: A0A5A7U5B5 (Aspartate aminotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00270 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVSNYD 57
           QVGMFCYSGLN EQIDQLARDFHIYMTRDGR+SMAGVTTRNVSYLA+AMHQVS+YD
Sbjct: 369 QVGMFCYSGLNYEQIDQLARDFHIYMTRDGRISMAGVTTRNVSYLAEAMHQVSSYD 424

[Close]
BLAST of MS013877 vs. TAIR 10
Match: AT2G30970.1 (aspartate aminotransferase 1 )

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-17
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFCYSGL  EQ+D+L  ++HIYMTR+GR+SMAGVTT NV YLA+A+H+V+
Sbjct: 375 QIGMFCYSGLTPEQVDRLTSEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVT 427

[Close]
BLAST of MS013877 vs. TAIR 10
Match: AT2G30970.2 (aspartate aminotransferase 1 )

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-17
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQVS 54
           Q+GMFCYSGL  EQ+D+L  ++HIYMTR+GR+SMAGVTT NV YLA+A+H+V+
Sbjct: 375 QIGMFCYSGLTPEQVDRLTSEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVT 427

[Close]
BLAST of MS013877 vs. TAIR 10
Match: AT5G19550.1 (aspartate aminotransferase 2 )

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-13
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMH 51
           Q+GMF ++GLN EQ++ + ++FHIYMT DGR+SMAG++++ V +LADAMH
Sbjct: 349 QIGMFTFTGLNKEQVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMH 398

[Close]
BLAST of MS013877 vs. TAIR 10
Match: AT5G11520.1 (aspartate aminotransferase 3 )

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-12
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1   QVGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQV 53
           Q+GMF ++GLN  Q+  + +++HIYMT DGR+SMAG++++ V +LADA+H V
Sbjct: 393 QIGMFTFTGLNPAQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAV 444

[Close]
BLAST of MS013877 vs. TAIR 10
Match: AT1G62800.1 (aspartate aminotransferase 4 )

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 26/51 (50.98%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 2   VGMFCYSGLNCEQIDQLARDFHIYMTRDGRMSMAGVTTRNVSYLADAMHQV 53
           +GMF ++GL+ EQ+  +A+++HIYMT DGR+SMA ++++ V  LADA+H V
Sbjct: 348 IGMFTFTGLSEEQVRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAV 398

The following BLAST results are available for this feature:
BLAST of MS013877 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882100.14.9e-2396.43aspartate aminotransferase, mitochondrial-like [Benincasa hispida] >XP_038882101... [more]
XP_022950910.11.9e-2294.64aspartate aminotransferase, mitochondrial-like [Cucurbita moschata] >XP_02295091... [more]
XP_022978180.11.9e-2294.64aspartate aminotransferase, mitochondrial-like [Cucurbita maxima] >XP_022978181.... [more]
XP_023544199.11.9e-2294.64aspartate aminotransferase, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_... [more]
XP_022144116.13.2e-2294.64aspartate aminotransferase, mitochondrial-like [Momordica charantia][more]
BLAST of MS013877 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P466436.1e-1667.92Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ASP... [more]
P123442.6e-1462.26Aspartate aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=GOT2 PE=1 SV=... [more]
P089079.7e-1460.38Aspartate aminotransferase, mitochondrial OS=Equus caballus OX=9796 GN=GOT2 PE=1... [more]
P005059.7e-1460.38Aspartate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=GOT2 PE=1 S... [more]
Q4R5599.7e-1460.38Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis OX=9541 GN=GOT2... [more]
BLAST of MS013877 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IPC49.1e-2394.64Aspartate aminotransferase OS=Cucurbita maxima OX=3661 GN=LOC111478240 PE=3 SV=1[more]
A0A6J1GG449.1e-2394.64Aspartate aminotransferase OS=Cucurbita moschata OX=3662 GN=LOC111453864 PE=3 SV... [more]
A0A6J1CSC61.5e-2294.64Aspartate aminotransferase OS=Momordica charantia OX=3673 GN=LOC111013883 PE=3 S... [more]
A0A5D3BH801.3e-2192.86Aspartate aminotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7U5B51.3e-2192.86Aspartate aminotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
BLAST of MS013877 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G30970.14.3e-1767.92aspartate aminotransferase 1 [more]
AT2G30970.24.3e-1767.92aspartate aminotransferase 1 [more]
AT5G19550.12.9e-1358.00aspartate aminotransferase 2 [more]
AT5G11520.17.1e-1251.92aspartate aminotransferase 3 [more]
AT1G62800.11.8e-1050.98aspartate aminotransferase 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004839Aminotransferase, class I/classIIPFAMPF00155Aminotran_1_2coord: 2..48
e-value: 9.8E-5
score: 21.7
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 1..55
e-value: 2.9E-22
score: 81.1
NoneNo IPR availablePANTHERPTHR11879:SF14ASPARTATE AMINOTRANSFERASEcoord: 1..54
IPR000796Aspartate/other aminotransferasePANTHERPTHR11879ASPARTATE AMINOTRANSFERASEcoord: 1..54
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013877.1MS013877.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity