MS013422 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCGCAGATTGCGGCATTCACCGCCGTCTATTGCTCGCTGGCCGTCATTTTCCTCGCCGGAGGTACTTCGAATGCGCGGGAATTGCGTCCATCGGAGCACGGATTGGAGTTCCAGAACCCTGGCAGTGGCGCTGCGGAGAAATCCTCGCCGGATATGAAGTCGTTCTTCCGAGGAAACTCCTGGTCCTCCTCCGAGGTCGCGCTTCCGAAGGCGATGAATACCAGCGTGCCGCCGGAGTGGTGGACTCGGAGCCATCACCACGGCGACCGCACTGGAGCCGCCGCCGGAAGAGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGCCTGGTATGTGGAATTGTAGGCGTTTCTTTGCTGATTGCCTCTGCTTTTATCTATATCTTTAAATTCAAGAAGCACAGATCATCGCCGTCCTCGCTCTCACTCTCTGATTCTACTAACATTGTTATCAACAAG TCGCAGATTGCGGCATTCACCGCCGTCTATTGCTCGCTGGCCGTCATTTTCCTCGCCGGAGGTACTTCGAATGCGCGGGAATTGCGTCCATCGGAGCACGGATTGGAGTTCCAGAACCCTGGCAGTGGCGCTGCGGAGAAATCCTCGCCGGATATGAAGTCGTTCTTCCGAGGAAACTCCTGGTCCTCCTCCGAGGTCGCGCTTCCGAAGGCGATGAATACCAGCGTGCCGCCGGAGTGGTGGACTCGGAGCCATCACCACGGCGACCGCACTGGAGCCGCCGCCGGAAGAGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGCCTGGTATGTGGAATTGTAGGCGTTTCTTTGCTGATTGCCTCTGCTTTTATCTATATCTTTAAATTCAAGAAGCACAGATCATCGCCGTCCTCGCTCTCACTCTCTGATTCTACTAACATTGTTATCAACAAG TCGCAGATTGCGGCATTCACCGCCGTCTATTGCTCGCTGGCCGTCATTTTCCTCGCCGGAGGTACTTCGAATGCGCGGGAATTGCGTCCATCGGAGCACGGATTGGAGTTCCAGAACCCTGGCAGTGGCGCTGCGGAGAAATCCTCGCCGGATATGAAGTCGTTCTTCCGAGGAAACTCCTGGTCCTCCTCCGAGGTCGCGCTTCCGAAGGCGATGAATACCAGCGTGCCGCCGGAGTGGTGGACTCGGAGCCATCACCACGGCGACCGCACTGGAGCCGCCGCCGGAAGAGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGCCTGGTATGTGGAATTGTAGGCGTTTCTTTGCTGATTGCCTCTGCTTTTATCTATATCTTTAAATTCAAGAAGCACAGATCATCGCCGTCCTCGCTCTCACTCTCTGATTCTACTAACATTGTTATCAACAAG SQIAAFTAVYCSLAVIFLAGGTSNARELRPSEHGLEFQNPGSGAAEKSSPDMKSFFRGNSWSSSEVALPKAMNTSVPPEWWTRSHHHGDRTGAAAGRGDHIRGALLVASLVCGIVGVSLLIASAFIYIFKFKKHRSSPSSLSLSDSTNIVINK Homology
BLAST of MS013422 vs. NCBI nr
Match: XP_023000949.1 (uncharacterized protein LOC111495232 [Cucurbita maxima]) HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53 Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 0
BLAST of MS013422 vs. NCBI nr
Match: KAG6583852.1 (hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019473.1 hypothetical protein SDJN02_18434, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 218.4 bits (555), Expect = 4.3e-53 Identity = 117/155 (75.48%), Postives = 135/155 (87.10%), Query Frame = 0
BLAST of MS013422 vs. NCBI nr
Match: XP_022927447.1 (uncharacterized protein LOC111434271 [Cucurbita moschata]) HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53 Identity = 116/155 (74.84%), Postives = 135/155 (87.10%), Query Frame = 0
BLAST of MS013422 vs. NCBI nr
Match: XP_023519911.1 (uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 217.6 bits (553), Expect = 7.3e-53 Identity = 116/155 (74.84%), Postives = 134/155 (86.45%), Query Frame = 0
BLAST of MS013422 vs. NCBI nr
Match: XP_038895122.1 (uncharacterized protein LOC120083432 [Benincasa hispida]) HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49 Identity = 109/153 (71.24%), Postives = 126/153 (82.35%), Query Frame = 0
BLAST of MS013422 vs. ExPASy TrEMBL
Match: A0A6J1KLE3 (uncharacterized protein LOC111495232 OS=Cucurbita maxima OX=3661 GN=LOC111495232 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 5.5e-54 Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 0
BLAST of MS013422 vs. ExPASy TrEMBL
Match: A0A6J1EH69 (uncharacterized protein LOC111434271 OS=Cucurbita moschata OX=3662 GN=LOC111434271 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53 Identity = 116/155 (74.84%), Postives = 135/155 (87.10%), Query Frame = 0
BLAST of MS013422 vs. ExPASy TrEMBL
Match: A0A6J1CG32 (uncharacterized protein LOC111010910 OS=Momordica charantia OX=3673 GN=LOC111010910 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 9.0e-49 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of MS013422 vs. ExPASy TrEMBL
Match: A0A5D3C2L6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00520 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 7.9e-45 Identity = 103/157 (65.61%), Postives = 125/157 (79.62%), Query Frame = 0
BLAST of MS013422 vs. ExPASy TrEMBL
Match: A0A1S3BC63 (uncharacterized protein LOC103488324 OS=Cucumis melo OX=3656 GN=LOC103488324 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 7.9e-45 Identity = 103/157 (65.61%), Postives = 125/157 (79.62%), Query Frame = 0
BLAST of MS013422 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.2 bits (165), Expect = 6.7e-12 Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 0
BLAST of MS013422 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 3.8e-07 Identity = 45/128 (35.16%), Postives = 62/128 (48.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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