MS013236 (gene) Bitter gourd (TR) v1

Overview


Name	MS013236
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	dormancy-associated protein homolog 4-like
Location	scaffold459: 1464498 .. 1464794 (+)
RNA-Seq Expression	MS013236
Synteny	MS013236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCCTCCAAAACATCTGGGACGAAACCCTTGCCGGTCCTCCGCCGGATTCCGCCCTGGGACGCCTTCGCAAGTACAATTCCTTCGCCGCCCACAGATCTCCGCCGATGACGATCTCCATTCCTAGCCCTACTACCCTCTCTCACACTCATGACTCGCCGCCGCCGCCGACTCCACCGCCGGTGACGCCTCGAGACGACGATATCAAGAGACTAATCACGAGGAGAAGATCTCTTGATTTTCCTCGCCCCCTGGAACTCCCTGACCGAACAACCCCTTCCGTTTACGATTGG

mRNA sequence

ATGAGTTTCCTCCAAAACATCTGGGACGAAACCCTTGCCGGTCCTCCGCCGGATTCCGCCCTGGGACGCCTTCGCAAGTACAATTCCTTCGCCGCCCACAGATCTCCGCCGATGACGATCTCCATTCCTAGCCCTACTACCCTCTCTCACACTCATGACTCGCCGCCGCCGCCGACTCCACCGCCGGTGACGCCTCGAGACGACGATATCAAGAGACTAATCACGAGGAGAAGATCTCTTGATTTTCCTCGCCCCCTGGAACTCCCTGACCGAACAACCCCTTCCGTTTACGATTGG

Coding sequence (CDS)

ATGAGTTTCCTCCAAAACATCTGGGACGAAACCCTTGCCGGTCCTCCGCCGGATTCCGCCCTGGGACGCCTTCGCAAGTACAATTCCTTCGCCGCCCACAGATCTCCGCCGATGACGATCTCCATTCCTAGCCCTACTACCCTCTCTCACACTCATGACTCGCCGCCGCCGCCGACTCCACCGCCGGTGACGCCTCGAGACGACGATATCAAGAGACTAATCACGAGGAGAAGATCTCTTGATTTTCCTCGCCCCCTGGAACTCCCTGACCGAACAACCCCTTCCGTTTACGATTGG

Protein sequence

MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDSPPPPTPPPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW

Homology

[Close]

BLAST of MS013236 vs. NCBI nr
Match: XP_022148244.1 (dormancy-associated protein homolog 4-like [Momordica charantia])

HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDSPPPPTP 60
           MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDS PPPTP
Sbjct: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDSRPPPTP 60

Query: 61  PPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW 100
           PPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW
Sbjct: 61  PPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW 99

[Close]

BLAST of MS013236 vs. NCBI nr
Match: XP_022137069.1 (dormancy-associated protein homolog 4-like [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 74/127 (58.27%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM----------TISIPSPTTLSH 60
           MSFLQ IWDETLAGP PDS LGRLRKYNSF+A RSPPM          +I IPSP TLSH
Sbjct: 1   MSFLQKIWDETLAGPAPDSGLGRLRKYNSFSASRSPPMLSGDVISIPRSIDIPSP-TLSH 60

Query: 61  THD----------------SPPPPTPPPVTPRDDDIKRLITRRRSLDFP--RPLELPDRT 100
           +                  S P P+ PP TPR DD+KRL T+RRS+DFP  RPLE  + T
Sbjct: 61  SLSQSRSQSRSFPDPASPISSPSPSTPPETPRGDDVKRL-TKRRSVDFPRRRPLEGAEPT 120

[Close]

BLAST of MS013236 vs. NCBI nr
Match: XP_038878401.1 (dormancy-associated protein homolog 4-like [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 5.1e-23
Identity = 71/124 (57.26%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM-----------TISIPSPTTLS 60
           MSFLQ +WDETLAGP PDS L RLRKYNSF+A RSPPM           +I IPSP TLS
Sbjct: 1   MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVVSNIPPSIQIPSP-TLS 60

Query: 61  HTHDSPP------------PPTPPPVTPRDDDIKRLITRRRSLDFP--RPLELPDRTTPS 100
               S P            PP+ PP TPR DD+KRL  RRRS+D+P  RPLE P++T+PS
Sbjct: 61  QNQTSFPESPIASSSTPRTPPSTPPETPRGDDMKRL-ARRRSIDYPRRRPLEGPEQTSPS 120

[Close]

BLAST of MS013236 vs. NCBI nr
Match: XP_022955440.1 (dormancy-associated protein homolog 4-like [Cucurbita moschata] >KAG7018232.1 Dormancy-associated protein-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM-----------TISIPSPTTLS 60
           MSFLQ +WD+TLAGP PDS L RLRKYNSF+A RSPPM            I IPSPT   
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  HTHDSPP--------PPTPPPVTPRDDDIKRLITRRRSLDFP--RPLELPDRTTPSVYDW 100
            +    P        PP+ PP TPR D +KRL TRRR++D+P  RPLE P++T+PSVYDW
Sbjct: 61  ASFPESPIAPSTPRTPPSTPPETPRGDHVKRL-TRRRTIDYPPRRPLEGPEQTSPSVYDW 119

[Close]

BLAST of MS013236 vs. NCBI nr
Match: XP_023527038.1 (dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 66/121 (54.55%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM-----------TISIPSPTTLS 60
           MSFLQ +WD+TLAGP PDS L RLRKYNSF+A RSPPM            I IPSPT   
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  HTHDSPP--------PPTPPPVTPRDDDIKRLITRRRSLDFP---RPLELPDRTTPSVYD 100
            +    P        PP+ PP TPR D +KRL TRRR++D+P   RPLE P++T+PSVYD
Sbjct: 61  ASFPESPIAPSTPRTPPSTPPETPRGDHVKRL-TRRRTIDYPPRRRPLEGPEQTSPSVYD 120

[Close]

BLAST of MS013236 vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 1  MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTIS 42
          M FL  +WDET+AGP PD+ LG+LRK++S +  RS P ++S
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLS 41

[Close]

BLAST of MS013236 vs. ExPASy Swiss-Prot
Match: Q8LD26 (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-04
Identity = 15/31 (48.39%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1  MSFLQNIWDETLAGPPPDSALGRLRKYNSFA 32
          M  L ++WD+T+AGP P++ LG+LRK+++F+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFS 31

[Close]

BLAST of MS013236 vs. ExPASy TrEMBL
Match: A0A6J1D3F2 (dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111016953 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDSPPPPTP 60
           MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDS PPPTP
Sbjct: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTISIPSPTTLSHTHDSRPPPTP 60

Query: 61  PPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW 100
           PPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW
Sbjct: 61  PPVTPRDDDIKRLITRRRSLDFPRPLELPDRTTPSVYDW 99

[Close]

BLAST of MS013236 vs. ExPASy TrEMBL
Match: A0A6J1C649 (dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111008630 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.0e-24
Identity = 74/127 (58.27%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM----------TISIPSPTTLSH 60
           MSFLQ IWDETLAGP PDS LGRLRKYNSF+A RSPPM          +I IPSP TLSH
Sbjct: 1   MSFLQKIWDETLAGPAPDSGLGRLRKYNSFSASRSPPMLSGDVISIPRSIDIPSP-TLSH 60

Query: 61  THD----------------SPPPPTPPPVTPRDDDIKRLITRRRSLDFP--RPLELPDRT 100
           +                  S P P+ PP TPR DD+KRL T+RRS+DFP  RPLE  + T
Sbjct: 61  SLSQSRSQSRSFPDPASPISSPSPSTPPETPRGDDVKRL-TKRRSVDFPRRRPLEGAEPT 120

[Close]

BLAST of MS013236 vs. ExPASy TrEMBL
Match: A0A6J1GV52 (dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457466 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM-----------TISIPSPTTLS 60
           MSFLQ +WD+TLAGP PDS L RLRKYNSF+A RSPPM            I IPSPT   
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  HTHDSPP--------PPTPPPVTPRDDDIKRLITRRRSLDFP--RPLELPDRTTPSVYDW 100
            +    P        PP+ PP TPR D +KRL TRRR++D+P  RPLE P++T+PSVYDW
Sbjct: 61  ASFPESPIAPSTPRTPPSTPPETPRGDHVKRL-TRRRTIDYPPRRPLEGPEQTSPSVYDW 119

[Close]

BLAST of MS013236 vs. ExPASy TrEMBL
Match: A0A6J1J079 (dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480027 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 66/121 (54.55%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM-----------TISIPSPTTLS 60
           MSFLQ +WD+TLAGP PDS L RLRKYNSF+A RSPPM            I IPSPT   
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  HTHDSPP--------PPTPPPVTPRDDDIKRLITRRRSLDFP---RPLELPDRTTPSVYD 100
            +    P        PP+ PP TPR D +KRL TRRR++D+P   RPLE P +T+PSVYD
Sbjct: 61  ASFPESPVAPSTPRTPPSTPPETPRGDHVKRL-TRRRTIDYPPRRRPLEGPQQTSPSVYD 120

[Close]

BLAST of MS013236 vs. ExPASy TrEMBL
Match: A0A6J1GCS2 (dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111452773 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 65/113 (57.52%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPM-----------TISIPSPTTLS 60
           MSFL  +WDETLAGP PDS L RLRKYNSF+A RSPPM            I IPSPT   
Sbjct: 1   MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRASNIPRRIEIPSPTLSQ 60

Query: 61  HTHDSPPPPTPPPVTPRDDDIKRLITRRRSLDFP--RPLELPDRT-TPSVYDW 100
           ++  +  PP  PP TPR DD+ RL  RRR++D+P  RPLE  D T TPSVYDW
Sbjct: 61  NSSTTTTPPPTPPETPRGDDMNRL-ARRRTIDYPRRRPLEGSDPTSTPSVYDW 112

[Close]

BLAST of MS013236 vs. TAIR 10
Match: AT1G54070.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-08
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 1  MSFLQNIWDETLAGPPPDSALGRLRKYNSFAAHRSPPMTIS 42
          M FL  +WDET+AGP PD+ LG+LRK++S +  RS P ++S
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLS 41

[Close]

BLAST of MS013236 vs. TAIR 10
Match: AT1G28330.1 (dormancy-associated protein-like 1 )

HSP 1 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 40/122 (32.79%), Postives = 53/122 (43.44%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKY---------------NSFAAHRSPPMTISIPSP 60
           M  L+ +WD+ +AGP PD  LGRLRK                +    HRS  M  ++   
Sbjct: 1   MVLLEKLWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAV--- 60

Query: 61  TTLSHTHDSPPPPTPP--PVTPRDDDIKRLITRRRSLDFPRPL--ELPDRTT----PSVY 100
                   SP  PT P  P TPR D++ R +    S    R +   + D+ T    PSVY
Sbjct: 61  --------SPGTPTTPTTPTTPRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNSPSVY 111

[Close]

BLAST of MS013236 vs. TAIR 10
Match: AT1G28330.4 (dormancy-associated protein-like 1 )

HSP 1 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 40/122 (32.79%), Postives = 53/122 (43.44%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKY---------------NSFAAHRSPPMTISIPSP 60
           M  L+ +WD+ +AGP PD  LGRLRK                +    HRS  M  ++   
Sbjct: 1   MVLLEKLWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAV--- 60

Query: 61  TTLSHTHDSPPPPTPP--PVTPRDDDIKRLITRRRSLDFPRPL--ELPDRTT----PSVY 100
                   SP  PT P  P TPR D++ R +    S    R +   + D+ T    PSVY
Sbjct: 61  --------SPGTPTTPTTPTTPRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNSPSVY 111

[Close]

BLAST of MS013236 vs. TAIR 10
Match: AT1G28330.3 (dormancy-associated protein-like 1 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 39/121 (32.23%), Postives = 52/121 (42.98%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKY---------------NSFAAHRSPPMTISIPSP 60
           M  L+ +WD+ +AGP PD  LGRLRK                +    HRS  M  ++   
Sbjct: 1   MVLLEKLWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAV--- 60

Query: 61  TTLSHTHDSPPPPTPP--PVTPRDDDIKRLITRRRSLDFPRPL--ELPDRTT----PSVY 99
                   SP  PT P  P TPR D++ R +    S    R +   + D+ T    PSVY
Sbjct: 61  --------SPGTPTTPTTPTTPRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNSPSVY 110

[Close]

BLAST of MS013236 vs. TAIR 10
Match: AT1G28330.2 (dormancy-associated protein-like 1 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 39/121 (32.23%), Postives = 52/121 (42.98%), Query Frame = 0


Query: 1   MSFLQNIWDETLAGPPPDSALGRLRKY---------------NSFAAHRSPPMTISIPSP 60
           M  L+ +WD+ +AGP PD  LGRLRK                +    HRS  M  ++   
Sbjct: 1   MVLLEKLWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAV--- 60

Query: 61  TTLSHTHDSPPPPTPP--PVTPRDDDIKRLITRRRSLDFPRPL--ELPDRTT----PSVY 99
                   SP  PT P  P TPR D++ R +    S    R +   + D+ T    PSVY
Sbjct: 61  --------SPGTPTTPTTPTTPRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNSPSVY 110

The following BLAST results are available for this feature:

BLAST of MS013236 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148244.1	3.2e-49	98.99	dormancy-associated protein homolog 4-like [Momordica charantia]	[more]
XP_022137069.1	1.0e-23	58.27	dormancy-associated protein homolog 4-like [Momordica charantia]	[more]
XP_038878401.1	5.1e-23	57.26	dormancy-associated protein homolog 4-like [Benincasa hispida]	[more]
XP_022955440.1	2.5e-22	55.00	dormancy-associated protein homolog 4-like [Cucurbita moschata] >KAG7018232.1 Do...	[more]
XP_023527038.1	3.3e-22	54.55	dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013236 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HV65	1.2e-06	53.66	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540...	[more]
Q8LD26	7.2e-04	48.39	Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g562...	[more]

BLAST of MS013236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3F2	1.5e-49	98.99	dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1C649	5.0e-24	58.27	dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1GV52	1.2e-22	55.00	dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J079	2.7e-22	54.55	dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GCS2	1.4e-21	57.52	dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of MS013236 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54070.1	8.4e-08	53.66	Dormancy/auxin associated family protein	[more]
AT1G28330.1	6.1e-06	32.79	dormancy-associated protein-like 1	[more]
AT1G28330.4	6.1e-06	32.79	dormancy-associated protein-like 1	[more]
AT1G28330.3	1.1e-04	32.23	dormancy-associated protein-like 1	[more]
AT1G28330.2	1.1e-04	32.23	dormancy-associated protein-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..99
None	No IPR available	PANTHER	PTHR33565:SF24	DORMANCY-ASSOCIATED PROTEIN HOMOLOG 4	coord: 1..39
IPR008406	Dormancy/auxin associated protein	PANTHER	PTHR33565	DORMANCY-ASSOCIATED PROTEIN 1	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013236.1	MS013236.1	mRNA