MS012318 (gene) Bitter gourd (TR) v1

Overview
NameMS012318
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold317: 255511 .. 255699 (-)
RNA-Seq ExpressionMS012318
SyntenyMS012318
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCAAATCGACATTATAATAGATGAGACCCTAGGGAAGCCAATATGCAAGAATACTACACATATGTCAAATTCTATTGGGTCCATAGTCCGAGAGAATTTTGACCCATTGAAGTACACCTATTGGAAGCAGGCACCAAAGGTCGATAGGATAAAAGCTAGAGATTGCGTAGTGGTAAGTTATTTATTT

mRNA sequence

GGGCAAATCGACATTATAATAGATGAGACCCTAGGGAAGCCAATATGCAAGAATACTACACATATGTCAAATTCTATTGGGTCCATAGTCCGAGAGAATTTTGACCCATTGAAGTACACCTATTGGAAGCAGGCACCAAAGGTCGATAGGATAAAAGCTAGAGATTGCGTAGTGGTAAGTTATTTATTT

Coding sequence (CDS)

GGGCAAATCGACATTATAATAGATGAGACCCTAGGGAAGCCAATATGCAAGAATACTACACATATGTCAAATTCTATTGGGTCCATAGTCCGAGAGAATTTTGACCCATTGAAGTACACCTATTGGAAGCAGGCACCAAAGGTCGATAGGATAAAAGCTAGAGATTGCGTAGTGGTAAGTTATTTATTT

Protein sequence

GQIDIIIDETLGKPICKNTTHMSNSIGSIVRENFDPLKYTYWKQAPKVDRIKARDCVVVSYLF
Homology
[Close]
BLAST of MS012318 vs. NCBI nr
Match: XP_022157107.1 (uncharacterized protein LOC111023906 isoform X2 [Momordica charantia] >XP_022157108.1 uncharacterized protein LOC111023906 isoform X2 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 7  IDETLGKPICKNTTHMSNSIGSIVRENFDPLKYTYWKQAPKVDRIKARDCVV 59
          +DE   KPICKN T MSN+I SIVRENFDP  Y+ W   P   R  A+  +V
Sbjct: 1  MDEFSQKPICKNATRMSNAIRSIVRENFDPALYSRWLDVPMEVRDAAKQRIV 52

[Close]
BLAST of MS012318 vs. ExPASy TrEMBL
Match: A0A6J1DTP1 (uncharacterized protein LOC111023906 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023906 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-06
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 7  IDETLGKPICKNTTHMSNSIGSIVRENFDPLKYTYWKQAPKVDRIKARDCVV 59
          +DE   KPICKN T MSN+I SIVRENFDP  Y+ W   P   R  A+  +V
Sbjct: 1  MDEFSQKPICKNATRMSNAIRSIVRENFDPALYSRWLDVPMEVRDAAKQRIV 52

The following BLAST results are available for this feature:
BLAST of MS012318 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157107.11.1e-0553.85uncharacterized protein LOC111023906 isoform X2 [Momordica charantia] >XP_022157... [more]
BLAST of MS012318 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012318 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DTP15.1e-0653.85uncharacterized protein LOC111023906 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of MS012318 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012318.1MS012318.1mRNA