MS012093 (gene) Bitter gourd (TR) v1

Overview


Name	MS012093
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription factor UPBEAT1
Location	scaffold708: 234417 .. 234659 (-)
RNA-Seq Expression	MS012093
Synteny	MS012093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAATTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCTTGTCTGCTTCTCCTTCCAATGAG

mRNA sequence

ATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAATTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCTTGTCTGCTTCTCCTTCCAATGAG

Coding sequence (CDS)

ATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAATTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCTTGTCTGCTTCTCCTTCCAATGAG

Protein sequence

IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSNE

Homology

[Close]

BLAST of MS012093 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 2   RRRS----RRRRRSRSS-GIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADY 61
           RRRS     ++RRSRSS  IE+RVSTLR+LVPNMNNNN  N H++    L+ LFT TADY
Sbjct: 43  RRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNN--NNHESCVGSLEQLFTQTADY 102

Query: 62  ILLLQTRVRLMQTLLHVLSASPSN 81
           IL LQTRVR M+ L+ VLSAS ++
Sbjct: 103 ILSLQTRVRFMKNLVDVLSASSND 124

[Close]

BLAST of MS012093 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 2   RRRS----RRRRRSRSS-GIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADY 61
           RRRS     ++RRSRSS  IE+RVSTLR+LVPNMNNNN  N H++    L+ LFT TADY
Sbjct: 48  RRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNN--NNHESCVGSLEQLFTQTADY 107

Query: 62  ILLLQTRVRLMQTLLHVLSASPSN 81
           IL LQTRVR M+ L+ VLSAS ++
Sbjct: 108 ILSLQTRVRFMKNLVDVLSASSND 129

[Close]

BLAST of MS012093 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLL 60
           +++RSRR   S SS IE+RV+TLRSLVPN +N+N  +  ++    L+ LFT TADYIL L
Sbjct: 85  LKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSL 144

Query: 61  QTRVRLMQTLLHVLSASPSN 81
           QTRVRLM+TL+ VLS   S+
Sbjct: 145 QTRVRLMKTLVDVLSDPSSS 164

[Close]

BLAST of MS012093 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 7.9e-06
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 2   RRRSR------RRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTAD 61
           RRR R      ++ R  S+ I +RV+TLR+LVPNMNN+N    +  +   L+ LFT TAD
Sbjct: 45  RRRRRTSKSLAKKTRRSSTRIVQRVTTLRNLVPNMNNDND---NDNNDGSLEQLFTHTAD 104

Query: 62  YILLLQTRVRLMQTLLHVLSASPS 80
           YIL LQTRVR M+TL+ VLS S S
Sbjct: 105 YILSLQTRVRFMRTLVDVLSGSSS 125

[Close]

BLAST of MS012093 vs. NCBI nr
Match: KAF3436561.1 (hypothetical protein FNV43_RR23653 [Rhamnella rubrinervis])

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 10  RSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQT 69
           R R++GIE+RV TL+ LVPN N++         ++GL  LF  TADYIL LQ RVR+MQ 
Sbjct: 87  RRRANGIERRVRTLKRLVPNSNSD---------SIGLDALFRETADYILSLQMRVRVMQI 146

Query: 70  LLHVLSASPSNE 82
           ++ VLS + S++
Sbjct: 147 MVKVLSGTTSDQ 149

[Close]

BLAST of MS012093 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-09
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLL 60
           +++RSRR   S SS IE+RV+TLRSLVPN +N+N  +  ++    L+ LFT TADYIL L
Sbjct: 85  LKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSL 144

Query: 61  QTRVRLMQTLLHVLSASPSN 81
           QTRVRLM+TL+ VLS   S+
Sbjct: 145 QTRVRLMKTLVDVLSDPSSS 164

[Close]

BLAST of MS012093 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   IRRRSRRRRRSRS--SGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYIL 60
           +++RSRR   S S  S IE+RV+ LR+LVPN N+N+  +    +   L+ LFT TADYIL
Sbjct: 89  LKKRSRRSSSSSSSTSRIEQRVNILRNLVPN-NDNHQDDDESCTAGSLEQLFTQTADYIL 148

Query: 61  LLQTRVRLMQTLLHVLSASPSN 81
            LQTRVRLM+TL+ VLS   S+
Sbjct: 149 SLQTRVRLMKTLVDVLSDPSSS 169

[Close]

BLAST of MS012093 vs. ExPASy TrEMBL
Match: A0A445BD20 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g041547 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-04
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 3   RRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQT 62
           RRSR R    ++GI+ RV TL++L+PN +NN          +GL  LF  TA+YIL LQ 
Sbjct: 55  RRSRGRGAKSNNGIQSRVRTLKNLIPNSDNN----------MGLDGLFRETANYILSLQN 114

Query: 63  RVRLMQTLLHVLSASPSNE 82
           RVR+MQ ++ VL+ S  ++
Sbjct: 115 RVRVMQVMVKVLTGSGGDD 123

[Close]

BLAST of MS012093 vs. ExPASy TrEMBL
Match: A0A444XT61 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g099168 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-04
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 3   RRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQT 62
           RRSR R    ++GI+ RV TL++L+PN +NN          +GL  LF  TA+YIL LQ 
Sbjct: 55  RRSRGRGTKSNNGIQSRVRTLKNLIPNSDNN----------MGLDGLFRETANYILSLQN 114

Query: 63  RVRLMQTLLHVLSASPSNE 82
           RVR+MQ ++ VL+ S  ++
Sbjct: 115 RVRVMQVMVKVLTGSGGDD 123

The following BLAST results are available for this feature:

BLAST of MS012093 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025601.1	9.1e-10	61.90	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6593250.1	9.1e-10	61.90	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_031744332.1	1.0e-08	56.25	transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ...	[more]
KAG6575752.1	7.9e-06	52.38	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3436561.1	3.0e-05	48.61	hypothetical protein FNV43_RR23653 [Rhamnella rubrinervis]	[more]

BLAST of MS012093 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D9	4.8e-09	56.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]
A0A5A7TXU1	2.5e-05	52.44	Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A445BD20	8.0e-04	44.30	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g041547 PE=4 SV=1	[more]
A0A444XT61	8.0e-04	44.30	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g099168 PE=4 SV=1	[more]

BLAST of MS012093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 3..76
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 3..76
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 5..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012093.1	MS012093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity