MS011395 (gene) Bitter gourd (TR) v1

Overview


Name	MS011395
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	scaffold239: 1567292 .. 1569249 (+)
RNA-Seq Expression	MS011395
Synteny	MS011395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCCTCCTCACTTTTTCAAGATGGTTTTGCAGAAAAGTCTTGAAGACAAACAGTTGGTAAGAATTCATCAGACTCTTACTTCTTCATTTTTCTTCTGAGTACACATTTTATATCATTTTATCCATCCCCATTAAACATGTAGATCCGACACTTTAACCATTCCCAATAAACAATCAGAAAACTCACTCTGCTTGTTTCCAGATGATTCCAAAAAAGTTTGTTCAAGAATATGGGAAGTTTCTGTCAAGTTCCGTACGTCTCAAGCTTCCTGATGGTAAGGAATGGAAAGTGGGCTTAAAGACCGCCACAAACGGTGCCGTTTGGCTGCAAAATGGCTGGCATCCATTTGCAGAGTACTATTGTTTAGAGTTTGGTTCGATGTTGGTTTTTAGACTCGATGGAAATTCGACTTTCCATACACTAATATTCGATGCAACTGGATCAGAGATTGAATATTCTTTCAACTTTAACCATTTTGAAGGAGATTTTAAAGAGGAGAATGATGCTAATTATTCTGATGAAAGTCTGAAGAATTTTTCTCCACATCCAGAAAAGAGGGAGAATGCCTCATTTCCCTGTTGGCAGCCTCATAAGAGGATGAAAAATGAAGCTTCATTTTCCCGAAAAATGGAACCTCAAGGTACCAATATTTTGATTTTTTCAGAATTTTCCTTTCAAAAAACTTGTTTATATCCGACCAGAAAAAAATTTGCTTAAGACACATTGAGTTTATGTCTGCAAAAATCTGTGTATCATTAACTGGTGTATCATAATATGCAGATCAAGAATGCTGTATTCTAAGGGAGAAGCCGAGTTGTAAGAGAATCCCAGAAGATGGGGTTTCAAGGAGAAGGCAGCCATTATCATCTACAGCCGAGAATGCTGAAAAACCTCAAAGATTCAGCGGTTCAAAATCAGAGAAACCTGGTTTCAGAATTGTTATAGGAAAATCAAGTCCAGGAGGCAGATTAAAAATGGTATGTTTTCTCTGCTTGATCAAAAACCCCCCATTTCTTTCGTGTTTTTGCTGGAAATAAGCCTTTTTTTTTTTTTTCCTTGTAGACCATTCCTAAAGACTTTGCACAAAATTATTTACCCGAAGAGGTTGGAAGAATCAGAATTCAGACTTTAGATGGTGGAAGTTGGTCACTTTTGTACAAATGGAGTCCAAGCCGAGGAGGTTTTGCTTATATTTCAAGAGGGTGGAAGCGCTTTGCAGAGGAAAATCTCTTGAAAAAAGGAGATGTTGGATTCTTTCAAATGATTGAAAAAGATCAATTTTTATTCACCATAGAAGAGACCTCTGCCTCTGCTTCCCATTCGCCAAAGAATAATGCTGCAACTATCAGAAATCCATTCTTTGAAGTTGATGTTTGCTTCAAAAGCTACCAATGTTCGACTCTGGTAAATTCCTTTCCCTTTTTTCACTGCCAAATATCTTCTGTTTTGTGTTTGAGTATTGATAGAACTTGTGTTATTCACTTTCGGGTTTAACGTTAGCTAGTTTAATATGGTATCATATAGTCTTCTCATATAATGCCATTTGCCTTCCAGTCCATATCGATAGTCATTTGCTAAGCTTTGTACTAATCTTTGAGCTTACGAGTTCATTTACTCTCCAATTAATATTGTTGAGAGGAAAATTTGGCATGAAAGTTGAACCACGTACATGTTATTTGATGGGCAGAACATTCCAATGGGGTTCGCGAAGAAGCATCTTTCACCAGTAGTGCACAGTGCGAGGCTTGAAGTAGGGAAAAAGCAATGGAATGTGAGGATTAAGAATTACGATAAGTGTATGAGATTCACATCTGGGTGGGGCATATTTCATAGGGAAAATTGCTTGCAAGATGAAGATACTTGCATATTTGAGCTGCTCAACAAGAATGATTCACACTGTGCTTTCAAAGTTACCATTTTTAAGAAAGCTACTTCCTCAGTGGAGGAAATA

mRNA sequence

ATGGCCTCTCCTCCTCACTTTTTCAAGATGGTTTTGCAGAAAAGTCTTGAAGACAAACAGTTGATGATTCCAAAAAAGTTTGTTCAAGAATATGGGAAGTTTCTGTCAAGTTCCGTACGTCTCAAGCTTCCTGATGGTAAGGAATGGAAAGTGGGCTTAAAGACCGCCACAAACGGTGCCGTTTGGCTGCAAAATGGCTGGCATCCATTTGCAGAGTACTATTGTTTAGAGTTTGGTTCGATGTTGGTTTTTAGACTCGATGGAAATTCGACTTTCCATACACTAATATTCGATGCAACTGGATCAGAGATTGAATATTCTTTCAACTTTAACCATTTTGAAGGAGATTTTAAAGAGGAGAATGATGCTAATTATTCTGATGAAAGTCTGAAGAATTTTTCTCCACATCCAGAAAAGAGGGAGAATGCCTCATTTCCCTGTTGGCAGCCTCATAAGAGGATGAAAAATGAAGCTTCATTTTCCCGAAAAATGGAACCTCAAGATCAAGAATGCTGTATTCTAAGGGAGAAGCCGAGTTGTAAGAGAATCCCAGAAGATGGGGTTTCAAGGAGAAGGCAGCCATTATCATCTACAGCCGAGAATGCTGAAAAACCTCAAAGATTCAGCGGTTCAAAATCAGAGAAACCTGGTTTCAGAATTGTTATAGGAAAATCAAGTCCAGGAGGCAGATTAAAAATGACCATTCCTAAAGACTTTGCACAAAATTATTTACCCGAAGAGGTTGGAAGAATCAGAATTCAGACTTTAGATGGTGGAAGTTGGTCACTTTTGTACAAATGGAGTCCAAGCCGAGGAGGTTTTGCTTATATTTCAAGAGGGTGGAAGCGCTTTGCAGAGGAAAATCTCTTGAAAAAAGGAGATGTTGGATTCTTTCAAATGATTGAAAAAGATCAATTTTTATTCACCATAGAAGAGACCTCTGCCTCTGCTTCCCATTCGCCAAAGAATAATGCTGCAACTATCAGAAATCCATTCTTTGAAGTTGATGTTTGCTTCAAAAGCTACCAATGTTCGACTCTGAACATTCCAATGGGGTTCGCGAAGAAGCATCTTTCACCAGTAGTGCACAGTGCGAGGCTTGAAGTAGGGAAAAAGCAATGGAATGTGAGGATTAAGAATTACGATAAGTGTATGAGATTCACATCTGGGTGGGGCATATTTCATAGGGAAAATTGCTTGCAAGATGAAGATACTTGCATATTTGAGCTGCTCAACAAGAATGATTCACACTGTGCTTTCAAAGTTACCATTTTTAAGAAAGCTACTTCCTCAGTGGAGGAAATA

Coding sequence (CDS)

ATGGCCTCTCCTCCTCACTTTTTCAAGATGGTTTTGCAGAAAAGTCTTGAAGACAAACAGTTGATGATTCCAAAAAAGTTTGTTCAAGAATATGGGAAGTTTCTGTCAAGTTCCGTACGTCTCAAGCTTCCTGATGGTAAGGAATGGAAAGTGGGCTTAAAGACCGCCACAAACGGTGCCGTTTGGCTGCAAAATGGCTGGCATCCATTTGCAGAGTACTATTGTTTAGAGTTTGGTTCGATGTTGGTTTTTAGACTCGATGGAAATTCGACTTTCCATACACTAATATTCGATGCAACTGGATCAGAGATTGAATATTCTTTCAACTTTAACCATTTTGAAGGAGATTTTAAAGAGGAGAATGATGCTAATTATTCTGATGAAAGTCTGAAGAATTTTTCTCCACATCCAGAAAAGAGGGAGAATGCCTCATTTCCCTGTTGGCAGCCTCATAAGAGGATGAAAAATGAAGCTTCATTTTCCCGAAAAATGGAACCTCAAGATCAAGAATGCTGTATTCTAAGGGAGAAGCCGAGTTGTAAGAGAATCCCAGAAGATGGGGTTTCAAGGAGAAGGCAGCCATTATCATCTACAGCCGAGAATGCTGAAAAACCTCAAAGATTCAGCGGTTCAAAATCAGAGAAACCTGGTTTCAGAATTGTTATAGGAAAATCAAGTCCAGGAGGCAGATTAAAAATGACCATTCCTAAAGACTTTGCACAAAATTATTTACCCGAAGAGGTTGGAAGAATCAGAATTCAGACTTTAGATGGTGGAAGTTGGTCACTTTTGTACAAATGGAGTCCAAGCCGAGGAGGTTTTGCTTATATTTCAAGAGGGTGGAAGCGCTTTGCAGAGGAAAATCTCTTGAAAAAAGGAGATGTTGGATTCTTTCAAATGATTGAAAAAGATCAATTTTTATTCACCATAGAAGAGACCTCTGCCTCTGCTTCCCATTCGCCAAAGAATAATGCTGCAACTATCAGAAATCCATTCTTTGAAGTTGATGTTTGCTTCAAAAGCTACCAATGTTCGACTCTGAACATTCCAATGGGGTTCGCGAAGAAGCATCTTTCACCAGTAGTGCACAGTGCGAGGCTTGAAGTAGGGAAAAAGCAATGGAATGTGAGGATTAAGAATTACGATAAGTGTATGAGATTCACATCTGGGTGGGGCATATTTCATAGGGAAAATTGCTTGCAAGATGAAGATACTTGCATATTTGAGCTGCTCAACAAGAATGATTCACACTGTGCTTTCAAAGTTACCATTTTTAAGAAAGCTACTTCCTCAGTGGAGGAAATA

Protein sequence

MASPPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDANYSDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQCSTLNIPMGFAKKHLSPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDSHCAFKVTIFKKATSSVEEI

Homology

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BLAST of MS011395 vs. NCBI nr
Match: XP_022132700.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 677.6 bits (1747), Expect = 7.4e-191
Identity = 341/438 (77.85%), Postives = 379/438 (86.53%), Query Frame = 0


Query: 4   PPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWL 63
           PPHFFKMVLQKS+EDKQLMIPKKFV++YGKFLSSS+ LKLPDG EWKVGLKTATNG+VWL
Sbjct: 7   PPHFFKMVLQKSIEDKQLMIPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWL 66

Query: 64  QNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDA 123
           +NGWH FAE+YCLE GSMLV RLDG STFHTLIFDATGSEIEYSF+   F GDF+EE+D 
Sbjct: 67  RNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEYSFDLKDFGGDFQEESDD 126

Query: 124 NYSDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSRKMEPQ---DQECCILREKPSC 183
           + SDESL++F  H +KRE  SFP  Q  K+M+NE SFS KMEP+    +EC I  EKPSC
Sbjct: 127 D-SDESLESFPQHSKKREKPSFPSSQSPKKMRNEGSFSPKMEPKTEPQEECYIFWEKPSC 186

Query: 184 KRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFA 243
           K+I EDGVS RRQPL+S  + AE+P+RFSGSKSEKPGFRIV+GKS+ GGR  MTIPKDFA
Sbjct: 187 KKISEDGVS-RRQPLTSLTKKAEEPKRFSGSKSEKPGFRIVMGKSTVGGRFFMTIPKDFA 246

Query: 244 QNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKRFAEENLLKKGDVGFFQM 303
           QNYLPE+VGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWK FAEENLLKKGDVGFFQM
Sbjct: 247 QNYLPEKVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKXFAEENLLKKGDVGFFQM 306

Query: 304 IEKDQFLFTIEETSASASH--SPKNNAATIRNPFFEVDVC--FKSYQCSTLNIPMGFAKK 363
           IEKDQFLFTIEETSASAS   SPK  AAT RNPFFEVDV     + +    NIPMGFAKK
Sbjct: 307 IEKDQFLFTIEETSASASASLSPKKTAATTRNPFFEVDVASIAINVRLCVQNIPMGFAKK 366

Query: 364 HLSPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDS 423
           H+SPV+HSARLEVGKKQW VR+KNY+KC+RFTSGWGIF+ ENCLQD D+C+FELLNKNDS
Sbjct: 367 HISPVIHSARLEVGKKQWKVRMKNYEKCIRFTSGWGIFYWENCLQDGDSCMFELLNKNDS 426

Query: 424 HCAFKVTIFKKATSSVEE 435
           HCAFKVTIF+KATSS+ E
Sbjct: 427 HCAFKVTIFQKATSSLSE 442

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BLAST of MS011395 vs. NCBI nr
Match: XP_022133305.1 (B3 domain-containing protein Os12g0591400-like [Momordica charantia])

HSP 1 Score: 558.1 bits (1437), Expect = 6.5e-155
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 164 MEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIG 223
           MEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIG
Sbjct: 1   MEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIG 60

Query: 224 KSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKR 283
           KSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWK 
Sbjct: 61  KSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKX 120

Query: 284 FAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQ 343
           FAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQ
Sbjct: 121 FAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQ 180

Query: 344 CSTLNIPMGFAKKHLSPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDE 403
           CSTLNIPMGFAKKHLSPVVH ARLEVG+KQWNVRIKNY+KCMRFTSGWGIFHRENCLQDE
Sbjct: 181 CSTLNIPMGFAKKHLSPVVHGARLEVGQKQWNVRIKNYEKCMRFTSGWGIFHRENCLQDE 240

Query: 404 DTCIFELLNKNDSHCAFKVTIFKKATSSVEEI 436
           DTCIFELLNKNDSHCAFKVTIFKKATSSVEEI
Sbjct: 241 DTCIFELLNKNDSHCAFKVTIFKKATSSVEEI 272

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BLAST of MS011395 vs. NCBI nr
Match: XP_022132589.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia])

HSP 1 Score: 544.7 bits (1402), Expect = 7.4e-151
Identity = 275/437 (62.93%), Postives = 334/437 (76.43%), Query Frame = 0


Query: 2   ASPPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAV 61
           +S PHFFK+V+Q++LED++LMIP+KFV+EYGKFLSSSVRLKLPDGKEWKVGLK  TNGAV
Sbjct: 3   SSSPHFFKIVMQRNLEDQRLMIPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAV 62

Query: 62  WLQNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEEN 121
           WLQNGWHPFAE+Y L+ GSMLV RLD NSTF TLIF+ +GSEIEYSF FN F GDF+EE+
Sbjct: 63  WLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEYSFKFNDFGGDFQEES 122

Query: 122 DANYSDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCK 181
           D + SDES + F  H +KRE  S P  Q  K+M++E SFS KM PQ+    I REKPSCK
Sbjct: 123 DDD-SDESFEIFHQHSKKREKPSLPSSQSRKKMRSEGSFSPKMVPQEGR-HISREKPSCK 182

Query: 182 RIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQ 241
           R+ ++GVS RRQPLSS A+ AEK          KPGF++V+GKS+ GGR  + IPK+FA+
Sbjct: 183 RMAQNGVSNRRQPLSSPAKKAEK----------KPGFKVVMGKSNVGGRFNLIIPKEFAE 242

Query: 242 NYLPEEVGRIRIQTLDGGSWSLLYKWSPSRG-GFAYISRGWKRFAEENLLKKGDVGFFQM 301
            YL EE G IR+Q  +G +W LLYKW+ SR   F+YIS GWK FAEENLLK GDVGFFQ+
Sbjct: 243 KYLAEEFGIIRVQNSNGKTWPLLYKWTRSRAYAFSYISSGWKCFAEENLLKVGDVGFFQL 302

Query: 302 IEKDQFLFTIEETSASASH--SPKNNAATIRNPFFEVDVCFKSYQCSTLNIPMGFAKKHL 361
           IE  +FLFT EETS S S   SPK  A T  NPFF+VD+ F SY+ + LNIPMGF KKH+
Sbjct: 303 IENGRFLFTTEETSPSTSPSLSPKKEAETATNPFFKVDIHFVSYRSTVLNIPMGFGKKHI 362

Query: 362 SPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDSHC 421
            P  H+  L++G K+W V +KNYD+C RF++GW  F+R+N LQD DTC+FELLNKN SH 
Sbjct: 363 PPGTHTVMLKLGGKKWKVSMKNYDRCFRFSAGWCSFYRDNALQDGDTCLFELLNKNHSHF 422

Query: 422 AFKVTIFKKATSSVEEI 436
            FKVTIF+K T+SVE +
Sbjct: 423 VFKVTIFRKITASVENV 427

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BLAST of MS011395 vs. NCBI nr
Match: XP_022132590.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia] >XP_022132592.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia])

HSP 1 Score: 517.7 bits (1332), Expect = 9.7e-143
Identity = 263/417 (63.07%), Postives = 315/417 (75.54%), Query Frame = 0


Query: 22  MIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNGWHPFAEYYCLEFGSM 81
           MIP+KFV+EYGKFLSSSVRLKLPDGKEWKVGLK  TNGAVWLQNGWHPFAE+Y L+ GSM
Sbjct: 1   MIPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSM 60

Query: 82  LVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDANYSDESLKNFSPHPEKRE 141
           LV RLD NSTF TLIF+ +GSEIEYSF FN F GDF+EE+D + SDES + F  H +KRE
Sbjct: 61  LVLRLDENSTFQTLIFEPSGSEIEYSFKFNDFGGDFQEESDDD-SDESFEIFHQHSKKRE 120

Query: 142 NASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAEN 201
             S P  Q  K+M++E SFS KM PQ+    I REKPSCKR+ ++GVS RRQPLSS A+ 
Sbjct: 121 KPSLPSSQSRKKMRSEGSFSPKMVPQEGR-HISREKPSCKRMAQNGVSNRRQPLSSPAKK 180

Query: 202 AEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSW 261
           AEK          KPGF++V+GKS+ GGR  + IPK+FA+ YL EE G IR+Q  +G +W
Sbjct: 181 AEK----------KPGFKVVMGKSNVGGRFNLIIPKEFAEKYLAEEFGIIRVQNSNGKTW 240

Query: 262 SLLYKWSPSRG-GFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASH- 321
            LLYKW+ SR   F+YIS GWK FAEENLLK GDVGFFQ+IE  +FLFT EETS S S  
Sbjct: 241 PLLYKWTRSRAYAFSYISSGWKCFAEENLLKVGDVGFFQLIENGRFLFTTEETSPSTSPS 300

Query: 322 -SPKNNAATIRNPFFEVDVCFKSYQCSTLNIPMGFAKKHLSPVVHSARLEVGKKQWNVRI 381
            SPK  A T  NPFF+VD+ F SY+ + LNIPMGF KKH+ P  H+  L++G K+W V +
Sbjct: 301 LSPKKEAETATNPFFKVDIHFVSYRSTVLNIPMGFGKKHIPPGTHTVMLKLGGKKWKVSM 360

Query: 382 KNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDSHCAFKVTIFKKATSSVEEI 436
           KNYD+C RF++GW  F+R+N LQD DTC+FELLNKN SH  FKVTIF+K T+SVE +
Sbjct: 361 KNYDRCFRFSAGWCSFYRDNALQDGDTCLFELLNKNHSHFVFKVTIFRKITASVENV 405

[Close]

BLAST of MS011395 vs. NCBI nr
Match: XP_022132593.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 448.7 bits (1153), Expect = 5.6e-122
Identity = 272/591 (46.02%), Postives = 322/591 (54.48%), Query Frame = 0


Query: 3   SPPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVW 62
           +PP FFK+VLQ++LE K+LMIPKKFV +YGKFLS+SVRL+L DG EWK+GL TA NGAVW
Sbjct: 16  NPPQFFKIVLQRNLEHKKLMIPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVW 75

Query: 63  LQNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEEND 122
           LQNGWHPFAE+Y LEFGS+LVFR DG STFHT IFD TGSEI+Y  NFN   GDF+EE+D
Sbjct: 76  LQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKYRCNFNDSSGDFEEEDD 135

Query: 123 ANYSDE-------------------------------------------------SLKNF 182
           ANYS +                                                 SLK+ 
Sbjct: 136 ANYSKQREKPSFHCQEFYINRKKRSCKRMREDGVSRRRQALSSTTKKADEDQRFSSLKSG 195

Query: 183 SP----------------------HPEK-------------------------------- 242
            P                        EK                                
Sbjct: 196 KPGFNVVMGKSNVGRGFTMIIPKEFAEKYLVEEFGSIGIQTSDGRSWSLLYKWSRSQVRD 255

Query: 243 ----------------------------------------------------RENASFPC 302
                                                               +E  SFPC
Sbjct: 256 YAYISDGWKRFAEGNRLKEGDVVFFQLIKRDKLLFQTIKYRCNFDDSSGDFEKEKPSFPC 315

Query: 303 WQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPEDGVSRRRQPLS--STAENAEKP 362
               K+M+NE  F  KMEP+  E C +  K        DGVSRRRQPLS   TA+ AE+P
Sbjct: 316 ---RKKMRNEGLFFPKMEPEAAEECYIYRK--------DGVSRRRQPLSCTGTAKKAEEP 375

Query: 363 QRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLY 422
           QR    KSEKPGF++V+GKS   GR  MTIPK FA  YL EE G I I T DG SWSLLY
Sbjct: 376 QRLCNLKSEKPGFKVVMGKSYVTGRCNMTIPKKFADKYLVEEFGTIGIHTSDGRSWSLLY 435

Query: 423 KWSPSR-GGFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTIEE-----TSASASH 431
           KWS ++   +AYIS GWKRF EE+LLK+GDVGFFQ+IEKDQ LF+ +E     TSAS S 
Sbjct: 436 KWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSL 495

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BLAST of MS011395 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-24
Identity = 96/343 (27.99%), Postives = 159/343 (46.36%), Query Frame = 0


Query: 5   PHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQ 64
           P F K++   ++++K+L +P KFV ++   LS +V L +PDG  W+VGL+ A N  +W Q
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADN-KIWFQ 63

Query: 65  NGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFN------FNHFE---- 124
           +GW  F + Y +  G +L+FR +GNS F   IF+ + SEI Y          NHF+    
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARL 123

Query: 125 -GDFKEEN---------------------DANYSDESLKNFSPHPEKRENASFPCWQPHK 184
             D ++E+                     +  Y+  +++     P K E  +     P K
Sbjct: 124 FEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKK 183

Query: 185 RMKNEASFSRKMEPQDQECCILR--EKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSG 244
           R + +    +  +P++      R  +  +  +  E   +R+R   + TAE  E+    + 
Sbjct: 184 RGRKK----KNADPEEINSSAPRDDDPENRSKFYESASARKR---TVTAEERERAINAAK 243

Query: 245 S-KSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSL--LYKW 304
           + +   P FR+V+  S       M +P  FA+ YL    G I++Q L    W +  LYK 
Sbjct: 244 TFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQ-LAEKQWPVRCLYK- 303

Query: 305 SPSRGGFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTI 311
                G A  S+GW  F  EN L +GDV  F+++    F+  +
Sbjct: 304 ----AGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKV 332

[Close]

BLAST of MS011395 vs. ExPASy Swiss-Prot
Match: Q851V5 (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-13
Identity = 80/316 (25.32%), Postives = 148/316 (46.84%), Query Frame = 0


Query: 6    HFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQN 65
            +FFK+++ +  E  +++IP +F+Q +   +  +++L+L DG  + V + T   G + LQ+
Sbjct: 733  NFFKVMIGRFRE--RMIIPNEFLQYFRGKIPRTIKLQLRDGCTYDVQV-TKNLGKISLQS 792

Query: 66   GWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYS----FNFNHFEGDFKEEN 125
            GW  F   + L+ G  LVF  DG S    LIF  +G E  +S     N  H    ++E  
Sbjct: 793  GWKAFVTAHDLQMGDFLVFSYDGISKLKVLIFGPSGCEKVHSRSTLKNATHCGEKWEEPL 852

Query: 126  DANYSDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSR-KMEPQDQE-----CCILR 185
              + +   L   SP    +       W   ++  + A+     ++  D +      CIL 
Sbjct: 853  HISSNSHDLPVKSPQNVSKSEKQ---WDSSEQENDTANIEEVALQGDDLQGHPVLNCIL- 912

Query: 186  EKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLK-MT 245
              P   R+ +     ++Q L S         +     SE P +  ++ KS   G+ + + 
Sbjct: 913  --PKHTRLTD----MQKQQLES---------KVGAIHSEIPIYGCILRKSRVHGKSQTVD 972

Query: 246  IPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKRFAEENLLKKGD 305
            I +++A  YLP +   + +Q   G +W +L +   +R     +S GW RFA+EN L+ GD
Sbjct: 973  ICREYADVYLPFKELNMTLQR-HGKNWEVLCRTKDTR--TKRLSTGWSRFAQENNLQVGD 1023

Query: 306  VGFFQMIEKDQFLFTI 311
            +  F++++K ++   +
Sbjct: 1033 ICLFELLKKKEYSMNV 1023

[Close]

BLAST of MS011395 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.3e-12
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 7   FFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNG 66
           FFK+VL  +++DK + IP +FV+  G  LS  V L  P G +  + LK      +W   G
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLK-RIGEEIWFHEG 89

Query: 67  WHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNH 113
           W  FAE + +E G  L+F    NS+F  +IF+A+  E  Y  +  H
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAVH 134

[Close]

BLAST of MS011395 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-11
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 7   FFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNG 66
           FFK+VL  +++DK + IP +FV+  G  LS  V L+ P G +  + LK      +W   G
Sbjct: 30  FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLK-RIGEEIWFHEG 89

Query: 67  WHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNH 113
           W  FAE + +E G  L+F    NS+F  +IF+ +  E +Y  +  H
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAVH 134

[Close]

BLAST of MS011395 vs. ExPASy Swiss-Prot
Match: Q851V1 (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-11
Identity = 71/284 (25.00%), Postives = 125/284 (44.01%), Query Frame = 0


Query: 23  IPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNGWHPFAEYYCLEFGSML 82
           IP +F+  +G  +  S++L+   G  + V + T  +G V LQ+GW  +   + L+ G  L
Sbjct: 46  IPNEFLHNFGGKIPKSIKLETRSGLTFDVQV-TKNSGRVVLQSGWASYVSAHDLKIGDFL 105

Query: 83  VFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDANYSDESLKNFSPHPEKREN 142
           VF+  G+S   TLIFD++G E            +   +      D +++N     +KR+ 
Sbjct: 106 VFKYSGDSQLKTLIFDSSGCEKVC---------EKPVDMSGRSYDIAMRNSQDEKKKRKQ 165

Query: 143 ASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENA 202
                    K   +E     ++ P     CIL  +    R+ ++ +  + + ++      
Sbjct: 166 RDISRQGTVK--PSEEGLKAELVPG----CILPSRTDLTRLQKNILIEKVKAIN------ 225

Query: 203 EKPQRFSGSKSEKPGFRIVIGKSSPGG-RLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSW 262
                     SE P +  V+  SS  G    + I K +A  YLP E G + +Q   G SW
Sbjct: 226 ----------SETPIYGYVMNNSSIHGIPCTVEISKKYADVYLPFEDGTVVLQH-HGKSW 285

Query: 263 SL---LYKWSPSRGGFAYISRGWKRFAEENLLKKGDVGFFQMIE 303
           ++   L K +  R       +GW++FA +N L  GD+  F +++
Sbjct: 286 NVRCCLTKQNSKR-----FLKGWRQFAGDNKLHLGDICLFDLLK 291

[Close]

BLAST of MS011395 vs. ExPASy TrEMBL
Match: A0A6J1BT74 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111005498 PE=4 SV=1)

HSP 1 Score: 677.6 bits (1747), Expect = 3.6e-191
Identity = 341/438 (77.85%), Postives = 379/438 (86.53%), Query Frame = 0


Query: 4   PPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWL 63
           PPHFFKMVLQKS+EDKQLMIPKKFV++YGKFLSSS+ LKLPDG EWKVGLKTATNG+VWL
Sbjct: 7   PPHFFKMVLQKSIEDKQLMIPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWL 66

Query: 64  QNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDA 123
           +NGWH FAE+YCLE GSMLV RLDG STFHTLIFDATGSEIEYSF+   F GDF+EE+D 
Sbjct: 67  RNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEYSFDLKDFGGDFQEESDD 126

Query: 124 NYSDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSRKMEPQ---DQECCILREKPSC 183
           + SDESL++F  H +KRE  SFP  Q  K+M+NE SFS KMEP+    +EC I  EKPSC
Sbjct: 127 D-SDESLESFPQHSKKREKPSFPSSQSPKKMRNEGSFSPKMEPKTEPQEECYIFWEKPSC 186

Query: 184 KRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFA 243
           K+I EDGVS RRQPL+S  + AE+P+RFSGSKSEKPGFRIV+GKS+ GGR  MTIPKDFA
Sbjct: 187 KKISEDGVS-RRQPLTSLTKKAEEPKRFSGSKSEKPGFRIVMGKSTVGGRFFMTIPKDFA 246

Query: 244 QNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKRFAEENLLKKGDVGFFQM 303
           QNYLPE+VGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWK FAEENLLKKGDVGFFQM
Sbjct: 247 QNYLPEKVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKXFAEENLLKKGDVGFFQM 306

Query: 304 IEKDQFLFTIEETSASASH--SPKNNAATIRNPFFEVDVC--FKSYQCSTLNIPMGFAKK 363
           IEKDQFLFTIEETSASAS   SPK  AAT RNPFFEVDV     + +    NIPMGFAKK
Sbjct: 307 IEKDQFLFTIEETSASASASLSPKKTAATTRNPFFEVDVASIAINVRLCVQNIPMGFAKK 366

Query: 364 HLSPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDS 423
           H+SPV+HSARLEVGKKQW VR+KNY+KC+RFTSGWGIF+ ENCLQD D+C+FELLNKNDS
Sbjct: 367 HISPVIHSARLEVGKKQWKVRMKNYEKCIRFTSGWGIFYWENCLQDGDSCMFELLNKNDS 426

Query: 424 HCAFKVTIFKKATSSVEE 435
           HCAFKVTIF+KATSS+ E
Sbjct: 427 HCAFKVTIFQKATSSLSE 442

[Close]

BLAST of MS011395 vs. ExPASy TrEMBL
Match: A0A6J1BUW1 (B3 domain-containing protein Os12g0591400-like OS=Momordica charantia OX=3673 GN=LOC111005917 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 3.1e-155
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 164 MEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIG 223
           MEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIG
Sbjct: 1   MEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIG 60

Query: 224 KSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKR 283
           KSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWK 
Sbjct: 61  KSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKX 120

Query: 284 FAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQ 343
           FAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQ
Sbjct: 121 FAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASHSPKNNAATIRNPFFEVDVCFKSYQ 180

Query: 344 CSTLNIPMGFAKKHLSPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDE 403
           CSTLNIPMGFAKKHLSPVVH ARLEVG+KQWNVRIKNY+KCMRFTSGWGIFHRENCLQDE
Sbjct: 181 CSTLNIPMGFAKKHLSPVVHGARLEVGQKQWNVRIKNYEKCMRFTSGWGIFHRENCLQDE 240

Query: 404 DTCIFELLNKNDSHCAFKVTIFKKATSSVEEI 436
           DTCIFELLNKNDSHCAFKVTIFKKATSSVEEI
Sbjct: 241 DTCIFELLNKNDSHCAFKVTIFKKATSSVEEI 272

[Close]

BLAST of MS011395 vs. ExPASy TrEMBL
Match: A0A6J1BTG9 (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005417 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 3.6e-151
Identity = 275/437 (62.93%), Postives = 334/437 (76.43%), Query Frame = 0


Query: 2   ASPPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAV 61
           +S PHFFK+V+Q++LED++LMIP+KFV+EYGKFLSSSVRLKLPDGKEWKVGLK  TNGAV
Sbjct: 3   SSSPHFFKIVMQRNLEDQRLMIPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAV 62

Query: 62  WLQNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEEN 121
           WLQNGWHPFAE+Y L+ GSMLV RLD NSTF TLIF+ +GSEIEYSF FN F GDF+EE+
Sbjct: 63  WLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEYSFKFNDFGGDFQEES 122

Query: 122 DANYSDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCK 181
           D + SDES + F  H +KRE  S P  Q  K+M++E SFS KM PQ+    I REKPSCK
Sbjct: 123 DDD-SDESFEIFHQHSKKREKPSLPSSQSRKKMRSEGSFSPKMVPQEGR-HISREKPSCK 182

Query: 182 RIPEDGVSRRRQPLSSTAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQ 241
           R+ ++GVS RRQPLSS A+ AEK          KPGF++V+GKS+ GGR  + IPK+FA+
Sbjct: 183 RMAQNGVSNRRQPLSSPAKKAEK----------KPGFKVVMGKSNVGGRFNLIIPKEFAE 242

Query: 242 NYLPEEVGRIRIQTLDGGSWSLLYKWSPSRG-GFAYISRGWKRFAEENLLKKGDVGFFQM 301
            YL EE G IR+Q  +G +W LLYKW+ SR   F+YIS GWK FAEENLLK GDVGFFQ+
Sbjct: 243 KYLAEEFGIIRVQNSNGKTWPLLYKWTRSRAYAFSYISSGWKCFAEENLLKVGDVGFFQL 302

Query: 302 IEKDQFLFTIEETSASASH--SPKNNAATIRNPFFEVDVCFKSYQCSTLNIPMGFAKKHL 361
           IE  +FLFT EETS S S   SPK  A T  NPFF+VD+ F SY+ + LNIPMGF KKH+
Sbjct: 303 IENGRFLFTTEETSPSTSPSLSPKKEAETATNPFFKVDIHFVSYRSTVLNIPMGFGKKHI 362

Query: 362 SPVVHSARLEVGKKQWNVRIKNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDSHC 421
            P  H+  L++G K+W V +KNYD+C RF++GW  F+R+N LQD DTC+FELLNKN SH 
Sbjct: 363 PPGTHTVMLKLGGKKWKVSMKNYDRCFRFSAGWCSFYRDNALQDGDTCLFELLNKNHSHF 422

Query: 422 AFKVTIFKKATSSVEEI 436
            FKVTIF+K T+SVE +
Sbjct: 423 VFKVTIFRKITASVENV 427

[Close]

BLAST of MS011395 vs. ExPASy TrEMBL
Match: A0A6J1BU95 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005417 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 4.7e-143
Identity = 263/417 (63.07%), Postives = 315/417 (75.54%), Query Frame = 0


Query: 22  MIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNGWHPFAEYYCLEFGSM 81
           MIP+KFV+EYGKFLSSSVRLKLPDGKEWKVGLK  TNGAVWLQNGWHPFAE+Y L+ GSM
Sbjct: 1   MIPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSM 60

Query: 82  LVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDANYSDESLKNFSPHPEKRE 141
           LV RLD NSTF TLIF+ +GSEIEYSF FN F GDF+EE+D + SDES + F  H +KRE
Sbjct: 61  LVLRLDENSTFQTLIFEPSGSEIEYSFKFNDFGGDFQEESDDD-SDESFEIFHQHSKKRE 120

Query: 142 NASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPEDGVSRRRQPLSSTAEN 201
             S P  Q  K+M++E SFS KM PQ+    I REKPSCKR+ ++GVS RRQPLSS A+ 
Sbjct: 121 KPSLPSSQSRKKMRSEGSFSPKMVPQEGR-HISREKPSCKRMAQNGVSNRRQPLSSPAKK 180

Query: 202 AEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSW 261
           AEK          KPGF++V+GKS+ GGR  + IPK+FA+ YL EE G IR+Q  +G +W
Sbjct: 181 AEK----------KPGFKVVMGKSNVGGRFNLIIPKEFAEKYLAEEFGIIRVQNSNGKTW 240

Query: 262 SLLYKWSPSRG-GFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTIEETSASASH- 321
            LLYKW+ SR   F+YIS GWK FAEENLLK GDVGFFQ+IE  +FLFT EETS S S  
Sbjct: 241 PLLYKWTRSRAYAFSYISSGWKCFAEENLLKVGDVGFFQLIENGRFLFTTEETSPSTSPS 300

Query: 322 -SPKNNAATIRNPFFEVDVCFKSYQCSTLNIPMGFAKKHLSPVVHSARLEVGKKQWNVRI 381
            SPK  A T  NPFF+VD+ F SY+ + LNIPMGF KKH+ P  H+  L++G K+W V +
Sbjct: 301 LSPKKEAETATNPFFKVDIHFVSYRSTVLNIPMGFGKKHIPPGTHTVMLKLGGKKWKVSM 360

Query: 382 KNYDKCMRFTSGWGIFHRENCLQDEDTCIFELLNKNDSHCAFKVTIFKKATSSVEEI 436
           KNYD+C RF++GW  F+R+N LQD DTC+FELLNKN SH  FKVTIF+K T+SVE +
Sbjct: 361 KNYDRCFRFSAGWCSFYRDNALQDGDTCLFELLNKNHSHFVFKVTIFRKITASVENV 405

[Close]

BLAST of MS011395 vs. ExPASy TrEMBL
Match: A0A6J1BWP5 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111005418 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 2.7e-122
Identity = 272/591 (46.02%), Postives = 322/591 (54.48%), Query Frame = 0


Query: 3   SPPHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVW 62
           +PP FFK+VLQ++LE K+LMIPKKFV +YGKFLS+SVRL+L DG EWK+GL TA NGAVW
Sbjct: 16  NPPQFFKIVLQRNLEHKKLMIPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLTTAANGAVW 75

Query: 63  LQNGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEEND 122
           LQNGWHPFAE+Y LEFGS+LVFR DG STFHT IFD TGSEI+Y  NFN   GDF+EE+D
Sbjct: 76  LQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKYRCNFNDSSGDFEEEDD 135

Query: 123 ANYSDE-------------------------------------------------SLKNF 182
           ANYS +                                                 SLK+ 
Sbjct: 136 ANYSKQREKPSFHCQEFYINRKKRSCKRMREDGVSRRRQALSSTTKKADEDQRFSSLKSG 195

Query: 183 SP----------------------HPEK-------------------------------- 242
            P                        EK                                
Sbjct: 196 KPGFNVVMGKSNVGRGFTMIIPKEFAEKYLVEEFGSIGIQTSDGRSWSLLYKWSRSQVRD 255

Query: 243 ----------------------------------------------------RENASFPC 302
                                                               +E  SFPC
Sbjct: 256 YAYISDGWKRFAEGNRLKEGDVVFFQLIKRDKLLFQTIKYRCNFDDSSGDFEKEKPSFPC 315

Query: 303 WQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPEDGVSRRRQPLS--STAENAEKP 362
               K+M+NE  F  KMEP+  E C +  K        DGVSRRRQPLS   TA+ AE+P
Sbjct: 316 ---RKKMRNEGLFFPKMEPEAAEECYIYRK--------DGVSRRRQPLSCTGTAKKAEEP 375

Query: 363 QRFSGSKSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSLLY 422
           QR    KSEKPGF++V+GKS   GR  MTIPK FA  YL EE G I I T DG SWSLLY
Sbjct: 376 QRLCNLKSEKPGFKVVMGKSYVTGRCNMTIPKKFADKYLVEEFGTIGIHTSDGRSWSLLY 435

Query: 423 KWSPSR-GGFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTIEE-----TSASASH 431
           KWS ++   +AYIS GWKRF EE+LLK+GDVGFFQ+IEKDQ LF+ +E     TSAS S 
Sbjct: 436 KWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSL 495

[Close]

BLAST of MS011395 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-25
Identity = 96/343 (27.99%), Postives = 159/343 (46.36%), Query Frame = 0


Query: 5   PHFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQ 64
           P F K++   ++++K+L +P KFV ++   LS +V L +PDG  W+VGL+ A N  +W Q
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADN-KIWFQ 63

Query: 65  NGWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFN------FNHFE---- 124
           +GW  F + Y +  G +L+FR +GNS F   IF+ + SEI Y          NHF+    
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARL 123

Query: 125 -GDFKEEN---------------------DANYSDESLKNFSPHPEKRENASFPCWQPHK 184
             D ++E+                     +  Y+  +++     P K E  +     P K
Sbjct: 124 FEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKK 183

Query: 185 RMKNEASFSRKMEPQDQECCILR--EKPSCKRIPEDGVSRRRQPLSSTAENAEKPQRFSG 244
           R + +    +  +P++      R  +  +  +  E   +R+R   + TAE  E+    + 
Sbjct: 184 RGRKK----KNADPEEINSSAPRDDDPENRSKFYESASARKR---TVTAEERERAINAAK 243

Query: 245 S-KSEKPGFRIVIGKSSPGGRLKMTIPKDFAQNYLPEEVGRIRIQTLDGGSWSL--LYKW 304
           + +   P FR+V+  S       M +P  FA+ YL    G I++Q L    W +  LYK 
Sbjct: 244 TFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQ-LAEKQWPVRCLYK- 303

Query: 305 SPSRGGFAYISRGWKRFAEENLLKKGDVGFFQMIEKDQFLFTI 311
                G A  S+GW  F  EN L +GDV  F+++    F+  +
Sbjct: 304 ----AGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKV 332

[Close]

BLAST of MS011395 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 73.2 bits (178), Expect = 5.9e-13
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 7   FFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNG 66
           FFK+VL  +++DK + IP +FV+  G  LS  V L  P G +  + LK      +W   G
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLK-RIGEEIWFHEG 89

Query: 67  WHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNH 113
           W  FAE + +E G  L+F    NS+F  +IF+A+  E  Y  +  H
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAVH 134

[Close]

BLAST of MS011395 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-13
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 7   FFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNG 66
           FFK+VL  +++DK + IP +FV+  G  LS  V L+ P G +  + LK      +W   G
Sbjct: 30  FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLK-RIGEEIWFHEG 89

Query: 67  WHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNH 113
           W  FAE + +E G  L+F    NS+F  +IF+ +  E +Y  +  H
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAVH 134

[Close]

BLAST of MS011395 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-11
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 7   FFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQNG 66
           F K++L   + +K + +P +FV+ +G  L+ +V L+ P G +  + +K      VW + G
Sbjct: 34  FIKIILLSRIIEKMMKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIK-RIGDEVWFEKG 93

Query: 67  WHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDANYS 126
           W  FAE + L  G  L F  +G+S F  +IFD + SEIEY         D  ++N     
Sbjct: 94  WSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL-------DDTDDNREEVM 152

Query: 127 DESLKNFS 135
           D+  + F+
Sbjct: 154 DDDEQGFT 152

[Close]

BLAST of MS011395 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 62.8 bits (151), Expect = 8.0e-10
Identity = 79/338 (23.37%), Postives = 137/338 (40.53%), Query Frame = 0


Query: 6   HFFKMVLQKSLEDKQLMIPKKFVQEYGKFLSSSVRLKLPDGKEWKVGLKTATNGAVWLQN 65
           HF +++L       +L+IP+KF     + L   V LK P G  + VG++      +  + 
Sbjct: 24  HFTQLLLPGF--HNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRF 83

Query: 66  GWHPFAEYYCLEFGSMLVFRLDGNSTFHTLIFDATGSEIEYSFNFNHFEGDFKEENDANY 125
           GW  F + + LE   +LVF+  G S F  L+FD                G    E   +Y
Sbjct: 84  GWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFD----------------GQTLCEKPTSY 143

Query: 126 SDESLKNFSPHPEKRENASFPCWQPHKRMKNEASFSRKMEPQDQECCILREKPSCKRIPE 185
                     H EK + AS   ++  + + ++   +    P       +R      + P 
Sbjct: 144 ----FVRKCGHAEKTK-ASHTGYEQEEHINSDIDTASAQLPVISPTSTVRVSEG--KYPL 203

Query: 186 DGVSRRRQPLSS------------TAENAEKPQRFSGSKSEKPGFRIVIGKSSPGGRLKM 245
            G  + R+ LS+            +A + +K    +       GF + + +S    +  +
Sbjct: 204 SGFKKMRRELSNDNLDQKADVEMISAGSNKKALSLAKRAISPDGFLVFMKRSHVVSKCFL 263

Query: 246 TIP-KDFAQNYL--PEEVGRIRIQTLDGGSWSLLYKWSPSRGGFAYISRGWKRFAEENLL 305
           TIP K   +N L   +EV    +  +D   W + +    +RG    IS GWK+F ++N L
Sbjct: 264 TIPYKWCVKNMLITRQEV----VMQVDQTKWEMKFNIFGARGS-GGISTGWKKFVQDNNL 323

Query: 306 KKGDVGFFQMIEKDQ-------FLFTIEETSASASHSP 322
           ++GDV  F+    +        ++F  EET  + +  P
Sbjct: 324 REGDVCVFEPANSETKPLHLNVYIFRGEETERTNNVDP 331

The following BLAST results are available for this feature:

BLAST of MS011395 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132700.1	7.4e-191	77.85	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]
XP_022133305.1	6.5e-155	98.53	B3 domain-containing protein Os12g0591400-like [Momordica charantia]	[more]
XP_022132589.1	7.4e-151	62.93	B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charan...	[more]
XP_022132590.1	9.7e-143	63.07	B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charan...	[more]
XP_022132593.1	5.6e-122	46.02	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]

BLAST of MS011395 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	1.9e-24	27.99	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q851V5	2.0e-13	25.32	Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japoni...	[more]
Q9ZSH7	8.3e-12	36.79	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q84R27	1.1e-11	35.85	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]
Q851V1	4.1e-11	25.00	Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japoni...	[more]

BLAST of MS011395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT74	3.6e-191	77.85	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]
A0A6J1BUW1	3.1e-155	98.53	B3 domain-containing protein Os12g0591400-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1BTG9	3.6e-151	62.93	B3 domain-containing transcription factor VRN1-like isoform X1 OS=Momordica char...	[more]
A0A6J1BU95	4.7e-143	63.07	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Momordica char...	[more]
A0A6J1BWP5	2.7e-122	46.02	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]

BLAST of MS011395 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	1.4e-25	27.99	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	5.9e-13	36.79	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	7.7e-13	35.85	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	3.2e-11	31.25	AP2/B3-like transcriptional factor family protein	[more]
AT4G33280.1	8.0e-10	23.37	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 338..428 e-value: 1.6E-6 score: 37.6 coord: 218..314 e-value: 4.5E-11 score: 52.8 coord: 7..100 e-value: 1.4E-14 score: 64.5
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 7..99 e-value: 1.1E-13 score: 50.8 coord: 228..309 e-value: 5.0E-14 score: 52.0 coord: 345..426 e-value: 1.7E-9 score: 37.4
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 6..100 score: 14.028822
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 332..428 score: 10.475244
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 218..314 score: 14.324953
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 216..310 e-value: 1.50542E-14 score: 67.3529
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 5..98 e-value: 1.90095E-17 score: 75.4421
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 342..426 e-value: 2.34053E-13 score: 63.8861
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 197..313 e-value: 2.4E-21 score: 77.7 coord: 314..429 e-value: 8.7E-23 score: 82.4
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 2..101 e-value: 6.8E-24 score: 85.7
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 4..107
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 329..427
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 213..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..225
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 313..426 coord: 3..309
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 313..426
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 3..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011395.1	MS011395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding