Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTAGCGGTAGCGGTAGCGAACGTCAAGTTTATAACTCTACGAGCGATTGTAGCAACTTCGAGAATTCAATGGTTGCTCTAGGAAGTAGAGGAAGTACTCATATCAATCGAGATGAATTTGAGAAAGATCCTCCACGTTATTTTCGCAATCTTCATGCAACTGAAAAGAATGAGAATAAGAAG
mRNA sequence
GGTAGCGGTAGCGGTAGCGAACGTCAAGTTTATAACTCTACGAGCGATTGTAGCAACTTCGAGAATTCAATGGTTGCTCTAGGAAGTAGAGGAAGTACTCATATCAATCGAGATGAATTTGAGAAAGATCCTCCACGTTATTTTCGCAATCTTCATGCAACTGAAAAGAATGAGAATAAGAAG
Coding sequence (CDS)
GGTAGCGGTAGCGGTAGCGAACGTCAAGTTTATAACTCTACGAGCGATTGTAGCAACTTCGAGAATTCAATGGTTGCTCTAGGAAGTAGAGGAAGTACTCATATCAATCGAGATGAATTTGAGAAAGATCCTCCACGTTATTTTCGCAATCTTCATGCAACTGAAAAGAATGAGAATAAGAAG
Protein sequence
GSGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNENKK
Homology
BLAST of MS006558 vs. NCBI nr
Match:
XP_022951913.1 (jacalin-related lectin 5-like [Cucurbita moschata] >XP_023521144.1 jacalin-related lectin 5-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 57.0 bits (136), Expect = 6.6e-05
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 0
Query: 2 SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
S +GS Q +NST SN MVA GS G+ HI+RD FE +P YF NLHA EK++
Sbjct: 12 SNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLHAAEKSQ 68
BLAST of MS006558 vs. NCBI nr
Match:
KGN43709.1 (hypothetical protein Csa_017051 [Cucumis sativus])
HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 37/64 (57.81%), Postives = 40/64 (62.50%), Query Frame = 0
Query: 1 GSGSGSERQVYNSTSDCSNFENS---MVALGSRGSTHINRDEFEKDPPRYFRNLHATEKN 60
GS S +ER V NST S+ E S MVA GS G HI RDEFE DP R+F NL A EKN
Sbjct: 46 GSDSKNERGVDNSTKVSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKN 105
Query: 61 ENKK 62
E K
Sbjct: 106 EKSK 109
BLAST of MS006558 vs. NCBI nr
Match:
XP_022973282.1 (jacalin-related lectin 5-like [Cucurbita maxima])
HSP 1 Score: 54.3 bits (129), Expect = 4.3e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0
Query: 2 SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
S GS Q +NST SN MVA GS G+ HI+RD E +P YF NLHA +KN+
Sbjct: 12 SNDGSAGQAHNSTRSGSNSSGKMVAPGSGGTAHISRDASESNPQGYFANLHAAQKNQ 68
BLAST of MS006558 vs. ExPASy TrEMBL
Match:
A0A6J1GJ19 (jacalin-related lectin 5-like OS=Cucurbita moschata OX=3662 GN=LOC111454653 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 0
Query: 2 SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
S +GS Q +NST SN MVA GS G+ HI+RD FE +P YF NLHA EK++
Sbjct: 12 SNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLHAAEKSQ 68
BLAST of MS006558 vs. ExPASy TrEMBL
Match:
A0A0A0K3Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062750 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 5.5e-05
Identity = 37/64 (57.81%), Postives = 40/64 (62.50%), Query Frame = 0
Query: 1 GSGSGSERQVYNSTSDCSNFENS---MVALGSRGSTHINRDEFEKDPPRYFRNLHATEKN 60
GS S +ER V NST S+ E S MVA GS G HI RDEFE DP R+F NL A EKN
Sbjct: 46 GSDSKNERGVDNSTKVSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKN 105
Query: 61 ENKK 62
E K
Sbjct: 106 EKSK 109
BLAST of MS006558 vs. ExPASy TrEMBL
Match:
A0A6J1I742 (jacalin-related lectin 5-like OS=Cucurbita maxima OX=3661 GN=LOC111471849 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0
Query: 2 SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
S GS Q +NST SN MVA GS G+ HI+RD E +P YF NLHA +KN+
Sbjct: 12 SNDGSAGQAHNSTRSGSNSSGKMVAPGSGGTAHISRDASESNPQGYFANLHAAQKNQ 68
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022951913.1 | 6.6e-05 | 52.63 | jacalin-related lectin 5-like [Cucurbita moschata] >XP_023521144.1 jacalin-relat... | [more] |
KGN43709.1 | 1.1e-04 | 57.81 | hypothetical protein Csa_017051 [Cucumis sativus] | [more] |
XP_022973282.1 | 4.3e-04 | 50.88 | jacalin-related lectin 5-like [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GJ19 | 3.2e-05 | 52.63 | jacalin-related lectin 5-like OS=Cucurbita moschata OX=3662 GN=LOC111454653 PE=4... | [more] |
A0A0A0K3Z8 | 5.5e-05 | 57.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062750 PE=4 SV=1 | [more] |
A0A6J1I742 | 2.1e-04 | 50.88 | jacalin-related lectin 5-like OS=Cucurbita maxima OX=3661 GN=LOC111471849 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |