
MS006542 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAGGGCGTTTTTAAGGCCGACGAGCTTTGCGGTTGAAGGGGGATTTGAATGGTGGAATGAGATCGACGAATCGGAGCAATGGCAGAATGGGATTTACTACTTCTTGGCTGCCTCTTATGGCATCATTTCCCTCATTGCCTTAGTACTCCACTCTTCTCTTACCCCTTTATGCTCTTTTCGTTCATTTTCTTCGCAGTTCCGGAGTTGTTTATCTAATTTAATGGCCGTATAACGCGATTGTTTGTTTATTTGTTTGTTTGTTTTGTTTTTCTTAGAAAGCATGTTGTTTTGTTGAGTTCGTGTCTTTATTGGGATTGACTGGTTTTACCTGTCTTGTGCTGTAATCTCGTGCCTCACTTTTCTGTTCAAGATAAAACAGGGCTTTCCTCCCGATGGACAAGATCCATAATTGTACTCTCGTGTACCATCAAATTATCGACGAATATAAGTGTTAAGTGTTGATAATTGATTGAATTTACTGTAGCCCATCGGCAAAGTTTTTGAGTTACGGTGGTTTAATATGATATCGGAGGAGGGCTAGAGTTGGGAATGAAGTTAAAACCCCATGGCCACCCATCTTAAGAATTAATTCCTATGGGTTTTCCAGCACCAAATGTTGTAGCGGGCGTCGGGCGGTTGTCCCGTGAAATTAGTTAAGGTGCATGTAAACTAGTTCAGACACTCGAAGATATAAAAAAAAGGAAAAATGGTATCGGTGGAATGTCATTTCTAAGTCCACTGCCACGAGTAGGGGAGTGTTAAGGGTTAATAAAGGATTAAATTTACCGTCCAATGAATTGAGATCTCTCACATATTCAGTTTGTTTGAAGTTTTAAAATAAAATACTCTGTGTGTGGGTTTGTCGTGAGCGTATACTGTATGTGTAAGCTGATAAAAAAGAACTGGATTTTTGGCTTACTTTGAAGAGAGGTTATCTCGGTTCCACTCTCTTTATGAGTTAGGATTTAGTACTTATTGTAAGGTAATTAAGAATGATATGGTGGAGTGTCAACTGTCCAATATGCCCTTGGACAATCAGAATTTATTGTGGGCATTCCGTCTTAGTTTGTTTCATTTGCTTCACTTTCTTCCTCATTTATATCCAACAAGAAAGAGAGTATGACCAAGCCAAGTGGAACCCTTTATGCAGTTTCTTGATAACTTTTGAAATTTACAAATGTAATAAAAACTTTAACCAGATTTTGTAAGTTCAATTAGATGTCTTGGGAAAAAGAACACGATAATTGGTTTGGTCTTTGTAATTAAAGCCTAATACTTAGAGTAATTGCTCAAGTTTTCAGGTTCAACTTATCCGAATTCAAATAAGAGTACCAGAATATGGGTGGACAACACAAAAGGCGTTCCATTTGATGAATTTCATTGTAAATGGATGTAAGATTGTATATTTGTTAATTTTTATTTATTTTTAATTATACTTGATGAGTAAATGTACCTTATTTGCATTTTGATAGTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATTCGGCCAAAGGTAGGTTTCTTATATTAATTGTGATAATGCCAACAAGGATTTGTAGATTATTAATGTCCTATCGGAGCTATGGTTATCGAGTATATCTAGGCCTCATTTTGATATTGTAGTAATACCATATTGACATTTATTTATTTTGTAACTATATGAAACATCCAGAAGGCTTTCTGAAGGTGAAATTGATAAATAAATATAAACACTCAAAAGCCTTGTTTCCTGATTTCTGTTGGTCAAGAAAATCCAGGGATTTCTTCCTCCTCTGACACTGGGAACCATAACATTGTTAGATGAAGATTTATTGCATTGTGTTAATATTGTTACCCGTCATAATCCACAGTGCAGCAGAGCATCATATTCCCATGCAAAAAAAGCAAGTCAATAAATAGACTTAAATTGATAATCCAGATATTCAGAGAGATCCACATACCTTTTCCCATGATGTAACTACGACTATTTTCTCTGAACCATATGGCTTGGAACTTTCATGTTGGTAAAGGCTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACGTACACTCTGCTTGTTCTATTTTGGGCTGAGATATACCATCAGGTACAAGAATCATTATTCTAATTAATCTGGACGAAGTTATGTTACATATTATATCAATCCTGTGCTAGAATTTTCATTGGTAATCCATTTAGGATATTTTTATTCTCTCAGGCACGGAGTCTTCCTATTGATAAACTTAAGCCCACTTACTGTATCATCAATGGAGTTGTGTATCTTACACAGGTAAGATAGAATATGTCACAACCAAAAGTTGTCTGTACAATGTGAAAACAGAATGAACTGAAATTTGGTTGATTTGTTTATATTAATTTTTTCTTTTCAATTATTTGTCATTGTGTTGCAGATCTGCATTTGGATATTTGTGATGTTAAGCCGAACACATGGTGCAGTTATAGCTGCTAAGCTCTTCTTTTCAGGTTGCAGTTTGAGACATACATTTTTTTCCCTTATATAAAAAACAAATGATATTTTGATATTCATTTTCTAATGTGACAAGAAATGTGATGTATAATTGATGTCCATTTTCAACTGGAACCTTCCATAAAAAATTGTCAACGGGAACCTTTTGGTTTTCACATCCTTGTTTATAGAGGCATATGTAAATGTAATTTTTTTTTCTCTATTGTTTCCAGTGGTTTCATTTTCTGCTGCACTGGGTTTCCTGATATATGGTGGGAGGTAATATCTGTTTATGAGGAGCTGTGGTTACTTATGTTCTACACTAATAACTTTGCTCTTAACAGGCTATTTGTCATGCTGAGACGCTTCCCTATTGAATCTAGAGGGCGCCAAAAAAAGTTGTATGAGGTTGGTTTAGTAATGCGTTCTTTTATGGACTATGCCTGGAAAACATAAGAAATACTGTATAACTAGAATTGTTTGAAGCAATAGAGTTTAAGAAACCTAAATATATGAAAAGGATACATCATTTTTCAATTTTGTCTCCAATGTTCCAACAGAACTATTTCATACCCATATATTTAGAAAAATTTATCCCTATTAGAAGGGTTACATGACATTTCAAAAAATATCTTTTTACATGTGCTAGAAATATCCCCTACACCCTACTGAAATGAAGGTATTGTATCCAATTAGAAAAATGACCCCAGGAAGGAATGAACACAAGACATTCAAATGCTACACCACTACACCACTATTCCATTATTCAATTTCAATAAGAACATATTGAAAAATTTTGAAAGATCGGAATGAAATTAAACTCTTAAAATATTAAGGATGAAATTGAAGAATGGTGTATATTTTAGAGATACATGATAGATTAGCCTTTTAAAGGATGCAGATTTTCTGAAGCTGTGGTTGATTTCTTATTTTTCCTTATCCTTGCAGGTTGGTTGTGTGACAGCAATTTGTTTTAGCTGTTTCTTTATAAGATGTTTTGTGGTAGGACGTTTTGATTTCCTTATGATTTCTGTAATCTTCATACCCATTCCTTAAGCAATTAATACATACATATATTTCTTCATCTTGTAGCTTGCCCTCTCGGCATTTAACAAGGATGCTGATCTTGATGTCCTAGATCATCCCATGCTCAACTTGATATACTACATGGCAAGTTTTCTAATTCCTAGTCTACATTATAATATTTTTTTCAAAGATGAATGGATTATTCTTTTAGTTAGTATTGCTAGTAAACAACTGAGGACGTTAAAAAATATTCTATTTGTTGGGATTATTTAAAGGGATTTACAGGTCTATTGTCTAACCCTTTTTTTTTTTTTAACTTATAAAACAAATATTCATATTATCAATGGATACATTAAATTTAATTTCACATGCTTCTACATAGGAATAAAGATCCACAAGAAAACTTTACAAATTTATTTGGGGGTCATTGATGCTTCTGTGAATGAGACATCAAGTAGAGTGAAGGATTTTAGGCCTAGAAGTATGGTCACAAGCTTGTATAAGATAATCGCGAAGACTTTGGTTGATAAATTGATAAAGGTCTTTCTTAGCATGATTTTTGATTCTTAAGGGGCCTTCATTGTGGGGGGGTAGATTTGGATCAAGTTTTTATTGCTGATGAGGATATTTAGGATCATAGAATTTGTAAAAAAGGTGTCATTGTAAGCGGGATGTTAGCTAAGATCAAGAAGGGAGTTGCGATGGTGAGTATGACTTACAGAAGTCTAGGAAAAATTTATATATATATTTCTTAAATGTGTTATCAGAAGGCATTTATGTTCACTTGGGAGAAATTTATGAAGCATATGTAAGAGACTCCTTTATTGGGATAAGCTGAATTTATTTATTTATTGTTTTATATAATTTCTGATGAATTTGATGTGCATTCTACTGCAGTTGGTAGAGATTGTTCCGTCGGCATTGGTTCTGTTTATACTGAGAAAACTTCCTCCGAGGCGTGTATCTGATCGGTATCACCCCATTGAA ATGGCGAGGGCGTTTTTAAGGCCGACGAGCTTTGCGGTTGAAGGGGGATTTGAATGGTGGAATGAGATCGACGAATCGGAGCAATGGCAGAATGGGATTTACTACTTCTTGGCTGCCTCTTATGGCATCATTTCCCTCATTGCCTTAGTTCAACTTATCCGAATTCAAATAAGAGTACCAGAATATGGGTGGACAACACAAAAGGCGTTCCATTTGATGAATTTCATTGTAAATGGATTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATTCGGCCAAAGGCTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACGTACACTCTGCTTGTTCTATTTTGGGCTGAGATATACCATCAGGCACGGAGTCTTCCTATTGATAAACTTAAGCCCACTTACTGTATCATCAATGGAGTTGTGTATCTTACACAGATCTGCATTTGGATATTTGTGATGTTAAGCCGAACACATGGTGCAGTTATAGCTGCTAAGCTCTTCTTTTCAGTGGTTTCATTTTCTGCTGCACTGGGTTTCCTGATATATGGTGGGAGGCTATTTGTCATGCTGAGACGCTTCCCTATTGAATCTAGAGGGCGCCAAAAAAAGTTGTATGAGGTTGGTTGTGTGACAGCAATTTGTTTTAGCTGTTTCTTTATAAGATGTTTTGTGCTTGCCCTCTCGGCATTTAACAAGGATGCTGATCTTGATGTCCTAGATCATCCCATGCTCAACTTGATATACTACATGGCAAAGATTGTTCCGTCGGCATTGGTTCTGTTTATACTGAGAAAACTTCCTCCGAGGCGTGTATCTGATCGGTATCACCCCATTGAA ATGGCGAGGGCGTTTTTAAGGCCGACGAGCTTTGCGGTTGAAGGGGGATTTGAATGGTGGAATGAGATCGACGAATCGGAGCAATGGCAGAATGGGATTTACTACTTCTTGGCTGCCTCTTATGGCATCATTTCCCTCATTGCCTTAGTTCAACTTATCCGAATTCAAATAAGAGTACCAGAATATGGGTGGACAACACAAAAGGCGTTCCATTTGATGAATTTCATTGTAAATGGATTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATTCGGCCAAAGGCTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACGTACACTCTGCTTGTTCTATTTTGGGCTGAGATATACCATCAGGCACGGAGTCTTCCTATTGATAAACTTAAGCCCACTTACTGTATCATCAATGGAGTTGTGTATCTTACACAGATCTGCATTTGGATATTTGTGATGTTAAGCCGAACACATGGTGCAGTTATAGCTGCTAAGCTCTTCTTTTCAGTGGTTTCATTTTCTGCTGCACTGGGTTTCCTGATATATGGTGGGAGGCTATTTGTCATGCTGAGACGCTTCCCTATTGAATCTAGAGGGCGCCAAAAAAAGTTGTATGAGGTTGGTTGTGTGACAGCAATTTGTTTTAGCTGTTTCTTTATAAGATGTTTTGTGCTTGCCCTCTCGGCATTTAACAAGGATGCTGATCTTGATGTCCTAGATCATCCCATGCTCAACTTGATATACTACATGGCAAAGATTGTTCCGTCGGCATTGGTTCTGTTTATACTGAGAAAACTTCCTCCGAGGCGTGTATCTGATCGGTATCACCCCATTGAA MARAFLRPTSFAVEGGFEWWNEIDESEQWQNGIYYFLAASYGIISLIALVQLIRIQIRVPEYGWTTQKAFHLMNFIVNGLRAILFGLYKSVFLIRPKALEMVVMEIPGLLFFSTYTLLVLFWAEIYHQARSLPIDKLKPTYCIINGVVYLTQICIWIFVMLSRTHGAVIAAKLFFSVVSFSAALGFLIYGGRLFVMLRRFPIESRGRQKKLYEVGCVTAICFSCFFIRCFVLALSAFNKDADLDVLDHPMLNLIYYMAKIVPSALVLFILRKLPPRRVSDRYHPIE Homology
BLAST of MS006542 vs. NCBI nr
Match: XP_022141918.1 (tobamovirus multiplication protein 1-like isoform X1 [Momordica charantia]) HSP 1 Score: 560.5 bits (1443), Expect = 8.6e-156 Identity = 283/287 (98.61%), Postives = 285/287 (99.30%), Query Frame = 0
BLAST of MS006542 vs. NCBI nr
Match: XP_038888866.1 (tobamovirus multiplication protein 1-like isoform X1 [Benincasa hispida]) HSP 1 Score: 491.5 bits (1264), Expect = 4.9e-135 Identity = 249/287 (86.76%), Postives = 264/287 (91.99%), Query Frame = 0
BLAST of MS006542 vs. NCBI nr
Match: XP_023530045.1 (tobamovirus multiplication protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 486.9 bits (1252), Expect = 1.2e-133 Identity = 240/273 (87.91%), Postives = 259/273 (94.87%), Query Frame = 0
BLAST of MS006542 vs. NCBI nr
Match: XP_022988878.1 (tobamovirus multiplication protein 1-like [Cucurbita maxima] >XP_022988879.1 tobamovirus multiplication protein 1-like [Cucurbita maxima]) HSP 1 Score: 486.5 bits (1251), Expect = 1.6e-133 Identity = 238/273 (87.18%), Postives = 260/273 (95.24%), Query Frame = 0
BLAST of MS006542 vs. NCBI nr
Match: XP_022927927.1 (tobamovirus multiplication protein 1-like isoform X1 [Cucurbita moschata] >XP_022927928.1 tobamovirus multiplication protein 1-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 485.7 bits (1249), Expect = 2.7e-133 Identity = 238/273 (87.18%), Postives = 260/273 (95.24%), Query Frame = 0
BLAST of MS006542 vs. ExPASy Swiss-Prot
Match: Q402F4 (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 1.9e-105 Identity = 185/287 (64.46%), Postives = 232/287 (80.84%), Query Frame = 0
BLAST of MS006542 vs. ExPASy Swiss-Prot
Match: Q9FEG2 (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 1.0e-103 Identity = 181/269 (67.29%), Postives = 225/269 (83.64%), Query Frame = 0
BLAST of MS006542 vs. ExPASy Swiss-Prot
Match: Q402F3 (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 3.8e-90 Identity = 157/268 (58.58%), Postives = 212/268 (79.10%), Query Frame = 0
BLAST of MS006542 vs. ExPASy Swiss-Prot
Match: Q948R8 (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 6.1e-88 Identity = 155/278 (55.76%), Postives = 216/278 (77.70%), Query Frame = 0
BLAST of MS006542 vs. ExPASy Swiss-Prot
Match: Q9ZUM2 (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2) HSP 1 Score: 325.5 bits (833), Expect = 6.1e-88 Identity = 152/268 (56.72%), Postives = 214/268 (79.85%), Query Frame = 0
BLAST of MS006542 vs. ExPASy TrEMBL
Match: A0A6J1CLY0 (tobamovirus multiplication protein 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012173 PE=3 SV=1) HSP 1 Score: 560.5 bits (1443), Expect = 4.2e-156 Identity = 283/287 (98.61%), Postives = 285/287 (99.30%), Query Frame = 0
BLAST of MS006542 vs. ExPASy TrEMBL
Match: A0A6J1JNL1 (tobamovirus multiplication protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486099 PE=3 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 7.7e-134 Identity = 238/273 (87.18%), Postives = 260/273 (95.24%), Query Frame = 0
BLAST of MS006542 vs. ExPASy TrEMBL
Match: A0A6J1EME9 (tobamovirus multiplication protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434684 PE=3 SV=1) HSP 1 Score: 485.7 bits (1249), Expect = 1.3e-133 Identity = 238/273 (87.18%), Postives = 260/273 (95.24%), Query Frame = 0
BLAST of MS006542 vs. ExPASy TrEMBL
Match: A0A1S3C0C4 (tobamovirus multiplication protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495421 PE=3 SV=1) HSP 1 Score: 484.6 bits (1246), Expect = 2.9e-133 Identity = 247/287 (86.06%), Postives = 261/287 (90.94%), Query Frame = 0
BLAST of MS006542 vs. ExPASy TrEMBL
Match: A0A0A0K5Z8 (DUF1084 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062880 PE=3 SV=1) HSP 1 Score: 481.1 bits (1237), Expect = 3.2e-132 Identity = 243/287 (84.67%), Postives = 261/287 (90.94%), Query Frame = 0
BLAST of MS006542 vs. TAIR 10
Match: AT4G21790.1 (tobamovirus multiplication 1 ) HSP 1 Score: 377.9 bits (969), Expect = 7.4e-105 Identity = 181/269 (67.29%), Postives = 225/269 (83.64%), Query Frame = 0
BLAST of MS006542 vs. TAIR 10
Match: AT1G14530.1 (Protein of unknown function (DUF1084) ) HSP 1 Score: 325.5 bits (833), Expect = 4.3e-89 Identity = 155/278 (55.76%), Postives = 216/278 (77.70%), Query Frame = 0
BLAST of MS006542 vs. TAIR 10
Match: AT1G14530.2 (Protein of unknown function (DUF1084) ) HSP 1 Score: 325.5 bits (833), Expect = 4.3e-89 Identity = 155/278 (55.76%), Postives = 216/278 (77.70%), Query Frame = 0
BLAST of MS006542 vs. TAIR 10
Match: AT2G02180.1 (tobamovirus multiplication protein 3 ) HSP 1 Score: 325.5 bits (833), Expect = 4.3e-89 Identity = 152/268 (56.72%), Postives = 214/268 (79.85%), Query Frame = 0
BLAST of MS006542 vs. TAIR 10
Match: AT3G59090.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 1.2e-09 Identity = 71/292 (24.32%), Postives = 114/292 (39.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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