Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTGATACTGATAACCTCCGCCGCCGCGCAGTCTCCGAAGAAACATTCGCACGCCTCTTCTCCTTCACCGGCCGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCACGCTGCTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCTCCATCTCCTCCCCTCCCGCCGATGCTCCGGCTCCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCCATCTGCGCCGCGGCTTTCCTCATG
mRNA sequence
ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTGATACTGATAACCTCCGCCGCCGCGCAGTCTCCGAAGAAACATTCGCACGCCTCTTCTCCTTCACCGGCCGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCACGCTGCTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCTCCATCTCCTCCCCTCCCGCCGATGCTCCGGCTCCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCCATCTGCGCCGCGGCTTTCCTCATG
Coding sequence (CDS)
ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTGATACTGATAACCTCCGCCGCCGCGCAGTCTCCGAAGAAACATTCGCACGCCTCTTCTCCTTCACCGGCCGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCACGCTGCTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCTCCATCTCCTCCCCTCCCGCCGATGCTCCGGCTCCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCCATCTGCGCCGCGGCTTTCCTCATG
Protein sequence
MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAFLM
Homology
BLAST of MS006528 vs. NCBI nr
Match:
XP_022141985.1 (classical arabinogalactan protein 1-like [Momordica charantia])
HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 104/112 (92.86%), Postives = 105/112 (93.75%), Query Frame = 0
Query: 1 MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAA 60
MASVRFTVLALMALILITSAAAQSPKKHSHA+SPSPAADSPRVSPKSAPSPATGKHS A
Sbjct: 1 MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG 60
Query: 61 PPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAFLM 113
PPSSSPSPALPPSSISSPPADAPA AGNTAASNSFAVAGSLF AAAFLM
Sbjct: 61 PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLF----AAAFLM 108
BLAST of MS006528 vs. NCBI nr
Match:
KAA0061155.1 (classical arabinogalactan protein 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 0
Query: 3 SVRFTVLALMALILITSAAAQSP-KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAP 62
++R V ++ LI SA AQSP + S A S SP+ SP+ SP AP+P++ K + P
Sbjct: 2 AIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSPP 61
Query: 63 -------PSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAFLM 113
PSSSPSPA PSSISSPPADAPAP+GN AAS +F+V GS A+ A ++
Sbjct: 62 STSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 119
BLAST of MS006528 vs. NCBI nr
Match:
KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 0
Query: 3 SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPAT 62
++R V+ +M +LI SA AQSP K S A S SP+ +SP+ SP +AP+PA+
Sbjct: 2 AIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPAS 61
Query: 63 GKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICA 108
K S +PP++SP SP+ PSSISSPPADAPAP+GN AAS SF++ GS+ + A
Sbjct: 62 LK-SPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYA 116
BLAST of MS006528 vs. NCBI nr
Match:
XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 61.2 bits (147), Expect = 6.4e-06
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 0
Query: 3 SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPA- 62
++R V+ +M +LI SA AQSP K S A S SP+ +SP+ SP +AP+PA
Sbjct: 2 AIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPAS 61
Query: 63 --TGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAF 113
+ AA PS SPSP+ PSSISSPPADAPAP+GN AAS S ++ GS+ A + A
Sbjct: 62 LQSPPSPPAASPSLSPSPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVLYAIVL 121
BLAST of MS006528 vs. NCBI nr
Match:
PQQ16428.1 (classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora])
HSP 1 Score: 60.8 bits (146), Expect = 8.4e-06
Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 0
Query: 1 MASVRFTVLALMALILITSAAAQSPKKH---------SHASSPSPAADSPRVSPK--SAP 60
MA VL LMA +L+ S AQSP HA++PSP++ P+ SP S P
Sbjct: 1 MARFSSVVLVLMASLLLASTRAQSPTSSPAKSPALSPKHAAAPSPSSTPPKASPSPLSTP 60
Query: 61 SPATGKHSHAAPPSSSP-SPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAA 113
A HS +PPS+SP SPA+PPSS+S PP++APAPA N A N F+ AG + AA
Sbjct: 61 PSAAPSHSPPSPPSASPESPAIPPSSVSVPPSEAPAPATNGAVLNRFSAAGFVAVGFFAA 120
BLAST of MS006528 vs. ExPASy TrEMBL
Match:
A0A6J1CJM5 (classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012223 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 5.8e-37
Identity = 104/112 (92.86%), Postives = 105/112 (93.75%), Query Frame = 0
Query: 1 MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAA 60
MASVRFTVLALMALILITSAAAQSPKKHSHA+SPSPAADSPRVSPKSAPSPATGKHS A
Sbjct: 1 MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG 60
Query: 61 PPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAFLM 113
PPSSSPSPALPPSSISSPPADAPA AGNTAASNSFAVAGSLF AAAFLM
Sbjct: 61 PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLF----AAAFLM 108
BLAST of MS006528 vs. ExPASy TrEMBL
Match:
A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)
HSP 1 Score: 63.5 bits (153), Expect = 6.3e-07
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 0
Query: 3 SVRFTVLALMALILITSAAAQSP-KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAP 62
++R V ++ LI SA AQSP + S A S SP+ SP+ SP AP+P++ K + P
Sbjct: 2 AIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSPP 61
Query: 63 -------PSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAFLM 113
PSSSPSPA PSSISSPPADAPAP+GN AAS +F+V GS A+ A ++
Sbjct: 62 STSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 119
BLAST of MS006528 vs. ExPASy TrEMBL
Match:
A0A314ZGT3 (Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11060 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 0
Query: 1 MASVRFTVLALMALILITSAAAQSPKKH---------SHASSPSPAADSPRVSPK--SAP 60
MA VL LMA +L+ S AQSP HA++PSP++ P+ SP S P
Sbjct: 1 MARFSSVVLVLMASLLLASTRAQSPTSSPAKSPALSPKHAAAPSPSSTPPKASPSPLSTP 60
Query: 61 SPATGKHSHAAPPSSSP-SPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAA 113
A HS +PPS+SP SPA+PPSS+S PP++APAPA N A N F+ AG + AA
Sbjct: 61 PSAAPSHSPPSPPSASPESPAIPPSSVSVPPSEAPAPATNGAVLNRFSAAGFVAVGFFAA 120
BLAST of MS006528 vs. ExPASy TrEMBL
Match:
A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 0
Query: 3 SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPAT 62
++R V+ + +LI SA AQSP K S A S SP+ +SP+ SP +AP+PA+
Sbjct: 2 AIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPAS 61
Query: 63 GKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAFL 113
K S +PP++SP SP+ PSSISSPPADAPAP+GN AAS SF++ GS+ + A +
Sbjct: 62 LK-SPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIVLM 121
BLAST of MS006528 vs. ExPASy TrEMBL
Match:
A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 0
Query: 1 MASVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSP 60
MA F V+ +A+ LI SA AQSP K S A S SP+ SP+ SP +AP+P
Sbjct: 1 MAHRGFVVMVTVAM-LIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTP 60
Query: 61 ATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAA 113
T S +PP++SP SP+ PSSISSPPADAPAP+GN+AAS S ++ GS+ A + A
Sbjct: 61 -TSLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVLFAIV 120
BLAST of MS006528 vs. TAIR 10
Match:
AT5G64310.1 (arabinogalactan protein 1 )
HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = 0
Query: 1 MASVRFTVLALMALILITSAAAQSP---------KKHSHASSP---SPAADSPRVSPKSA 60
MA + V L+A +LI+SA AQSP ++ S A SP + A +P VSP +
Sbjct: 1 MAFSKSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPS 60
Query: 61 PSPATGKHSHAAPPS-------SSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSL 113
P+ A S A+PPS ++ SPAL PS+IS P +AP PA A SN FA GS+
Sbjct: 61 PAAALTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSV 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022141985.1 | 1.2e-36 | 92.86 | classical arabinogalactan protein 1-like [Momordica charantia] | [more] |
KAA0061155.1 | 1.3e-06 | 48.31 | classical arabinogalactan protein 1-like [Cucumis melo var. makuwa] | [more] |
KAG7030900.1 | 2.9e-06 | 49.14 | hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023542663.1 | 6.4e-06 | 46.72 | classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
PQQ16428.1 | 8.4e-06 | 44.35 | classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CJM5 | 5.8e-37 | 92.86 | classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A5A7V5Q9 | 6.3e-07 | 48.31 | Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A314ZGT3 | 4.1e-06 | 44.35 | Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=209455... | [more] |
A0A6J1FW49 | 1.2e-05 | 46.28 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6J1JSK4 | 1.5e-05 | 47.97 | classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
Match Name | E-value | Identity | Description | |
AT5G64310.1 | 3.8e-04 | 38.93 | arabinogalactan protein 1 | [more] |