MS006196 (gene) Bitter gourd (TR) v1

Overview


Name	MS006196
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF688)
Location	scaffold96: 1036500 .. 1036943 (-)
RNA-Seq Expression	MS006196
Synteny	MS006196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTCGGAGCCGCCGCATGCGACGGAACCGAGCTCTACTCCGACGCTATCTCTCTCTCAGCTTCTGCCGGAGCCGCCGTGGATGCCCACGCCGCCGCGTTTAACTCTGGCCTCAATCCCCTTCCTGTGGGAGGAGGCGCCGGGCAAGCCCCGCCAATGCGCCGGATCACAAGCTCCGCCGTCGCCACCGCTGCCGCCGGGAGAGAGAACGTTGGAGCTGCCTCCGCGGCTGCAGACCGCTCTGCCGTCGCCTACAACGGTGCTCGACGGCCCGGAAATTAGGAGGGCCGGGGGATCCAACTCCAAGAGATGGGGCAGTTTCAGGAAGTGTAAGGAGATCGCCGTCGCCGGCGGCGGCGGCGGGAGGCTTAGAAGGAAGAGAAATGTATTGCTATCAGTTTCATCTTATTCAAAATCACACTTCTTGGTAAACTGCTCCAAA

mRNA sequence

ATGTGGTCGGAGCCGCCGCATGCGACGGAACCGAGCTCTACTCCGACGCTATCTCTCTCTCAGCTTCTGCCGGAGCCGCCGTGGATGCCCACGCCGCCGCGTTTAACTCTGGCCTCAATCCCCTTCCTGTGGGAGGAGGCGCCGGGCAAGCCCCGCCAATGCGCCGGATCACAAGCTCCGCCGTCGCCACCGCTGCCGCCGGGAGAGAGAACGTTGGAGCTGCCTCCGCGGCTGCAGACCGCTCTGCCGTCGCCTACAACGGTGCTCGACGGCCCGGAAATTAGGAGGGCCGGGGGATCCAACTCCAAGAGATGGGGCAGTTTCAGGAAGTGTAAGGAGATCGCCGTCGCCGGCGGCGGCGGCGGGAGGCTTAGAAGGAAGAGAAATGTATTGCTATCAGTTTCATCTTATTCAAAATCACACTTCTTGGTAAACTGCTCCAAA

Coding sequence (CDS)

ATGTGGTCGGAGCCGCCGCATGCGACGGAACCGAGCTCTACTCCGACGCTATCTCTCTCTCAGCTTCTGCCGGAGCCGCCGTGGATGCCCACGCCGCCGCGTTTAACTCTGGCCTCAATCCCCTTCCTGTGGGAGGAGGCGCCGGGCAAGCCCCGCCAATGCGCCGGATCACAAGCTCCGCCGTCGCCACCGCTGCCGCCGGGAGAGAGAACGTTGGAGCTGCCTCCGCGGCTGCAGACCGCTCTGCCGTCGCCTACAACGGTGCTCGACGGCCCGGAAATTAGGAGGGCCGGGGGATCCAACTCCAAGAGATGGGGCAGTTTCAGGAAGTGTAAGGAGATCGCCGTCGCCGGCGGCGGCGGCGGGAGGCTTAGAAGGAAGAGAAATGTATTGCTATCAGTTTCATCTTATTCAAAATCACACTTCTTGGTAAACTGCTCCAAA

Protein sequence

MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAPPSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGGGGRLRRKRNVLLSVSSYSKSHFLVNCSK

Homology

[Close]

BLAST of MS006196 vs. NCBI nr
Match: XP_022158043.1 (uncharacterized protein At4g00950-like [Momordica charantia])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAP 60
           MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAP
Sbjct: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAP 60

Query: 61  PSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGG 120
           PSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGG
Sbjct: 61  PSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGG 120

Query: 121 GGRLRRKRNVLLSVSSYSKSHFLVN 146
           GGRLRRKRNVLLSVSSYSKSHFLV+
Sbjct: 121 GGRLRRKRNVLLSVSSYSKSHFLVS 145

[Close]

BLAST of MS006196 vs. NCBI nr
Match: XP_022995989.1 (uncharacterized protein At4g00950-like [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-35
Identity = 97/160 (60.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ-- 60
           MWSEPPH  E SSTP+L LS+L PEPPWMPTPPRLTLAS+PFLWEEAPGKPR  AGS+  
Sbjct: 1   MWSEPPHTLERSSTPSLVLSRLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPFAGSEIP 60

Query: 61  --APPSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAV 120
             +PP   LPP  R L     +Q+ L SPTTVLDGPE  RA G  SKRWGSFR CKE+  
Sbjct: 61  WLSPPLGDLPPPPRLLN--EAIQSTLLSPTTVLDGPE--RAYG--SKRWGSFRMCKELVS 120

Query: 121 ------------AGGGGGRLRRKRNVLLSVSSYSKSHFLV 145
                        GGG GR  +K    LSVSSY +SHFLV
Sbjct: 121 GGNDSLATGVDGGGGGSGRFGKKITPSLSVSSYGRSHFLV 154

[Close]

BLAST of MS006196 vs. NCBI nr
Match: KAG6605789.1 (hypothetical protein SDJN03_03106, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035754.1 hypothetical protein SDJN02_02552, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 3.9e-35
Identity = 96/160 (60.00%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ-- 60
           MWSEPPH  E SSTP+L  S+L PEPPWMPTPPRLTLAS+PFLWEEAPGKPR  AGS+  
Sbjct: 1   MWSEPPHTPERSSTPSLVFSRLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPFAGSEIP 60

Query: 61  --APPSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIA- 120
             +PP   LPP  R L     +Q+ L SPTTVLDGPE  RA G  SKRWGSFR CKE+  
Sbjct: 61  WLSPPLGDLPPPPRLLN--EAIQSTLLSPTTVLDGPE--RAYG--SKRWGSFRMCKELVG 120

Query: 121 -----------VAGGGGGRLRRKRNVLLSVSSYSKSHFLV 145
                        GGG GR  +K    LSVSSY +SHFLV
Sbjct: 121 GGNDSLATVVDGCGGGSGRFGKKITPSLSVSSYGRSHFLV 154

[Close]

BLAST of MS006196 vs. NCBI nr
Match: XP_022958693.1 (uncharacterized protein LOC111459844 [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 3.9e-35
Identity = 96/160 (60.00%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ-- 60
           MWSEPPH  E SSTP+L  S+L PEPPWMPTPPRLTLAS+PFLWEEAPGKPR  AGS+  
Sbjct: 1   MWSEPPHTPERSSTPSLVFSRLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPFAGSEIP 60

Query: 61  --APPSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIA- 120
             +PP   LPP  R L     +Q+ L SPTTVLDGPE  RA G  SKRWGSFR CKE+  
Sbjct: 61  WLSPPLGDLPPPPRLLN--EAIQSTLLSPTTVLDGPE--RAYG--SKRWGSFRMCKELVG 120

Query: 121 -----------VAGGGGGRLRRKRNVLLSVSSYSKSHFLV 145
                        GGG GR  +K    LSVSSY +SHFLV
Sbjct: 121 GGNDSLATVVDGGGGGSGRFGKKITPSLSVSSYGRSHFLV 154

[Close]

BLAST of MS006196 vs. NCBI nr
Match: XP_038875428.1 (uncharacterized protein LOC120067888 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 8.4e-30
Identity = 90/166 (54.22%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ-- 60
           M SEPPH    +S PTL LS L PEPPWMPTPPRLTLAS+PFLWEEAPGKPR  A S+  
Sbjct: 1   MCSEPPHTPHRTSIPTLPLSWLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRSSAASKVL 60

Query: 61  --APPSPPLPPGERTLELPPRL-----QTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKC 120
              P    LPP       PP+L     Q+ LPSPTT+LDGPE     G  SKRWGSFR  
Sbjct: 61  WPVPALGELPP-------PPQLFNEAKQSTLPSPTTLLDGPE---RAGDRSKRWGSFRMF 120

Query: 121 KEI--------------AVAGGGGGRLRRKRNVLLSVSSYSKSHFL 144
           K+               A  GGG G  RRKR    SVSSY++SHFL
Sbjct: 121 KDFVGGNGNGNDSLAAGADCGGGSGWFRRKRTSSSSVSSYTRSHFL 156

[Close]

BLAST of MS006196 vs. ExPASy TrEMBL
Match: A0A6J1DV06 (uncharacterized protein At4g00950-like OS=Momordica charantia OX=3673 GN=LOC111024622 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAP 60
           MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAP
Sbjct: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAP 60

Query: 61  PSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGG 120
           PSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGG
Sbjct: 61  PSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAVAGGG 120

Query: 121 GGRLRRKRNVLLSVSSYSKSHFLVN 146
           GGRLRRKRNVLLSVSSYSKSHFLV+
Sbjct: 121 GGRLRRKRNVLLSVSSYSKSHFLVS 145

[Close]

BLAST of MS006196 vs. ExPASy TrEMBL
Match: A0A6J1K7H0 (uncharacterized protein At4g00950-like OS=Cucurbita maxima OX=3661 GN=LOC111491336 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.0e-36
Identity = 97/160 (60.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ-- 60
           MWSEPPH  E SSTP+L LS+L PEPPWMPTPPRLTLAS+PFLWEEAPGKPR  AGS+  
Sbjct: 1   MWSEPPHTLERSSTPSLVLSRLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPFAGSEIP 60

Query: 61  --APPSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIAV 120
             +PP   LPP  R L     +Q+ L SPTTVLDGPE  RA G  SKRWGSFR CKE+  
Sbjct: 61  WLSPPLGDLPPPPRLLN--EAIQSTLLSPTTVLDGPE--RAYG--SKRWGSFRMCKELVS 120

Query: 121 ------------AGGGGGRLRRKRNVLLSVSSYSKSHFLV 145
                        GGG GR  +K    LSVSSY +SHFLV
Sbjct: 121 GGNDSLATGVDGGGGGSGRFGKKITPSLSVSSYGRSHFLV 154

[Close]

BLAST of MS006196 vs. ExPASy TrEMBL
Match: A0A6J1H3S6 (uncharacterized protein LOC111459844 OS=Cucurbita moschata OX=3662 GN=LOC111459844 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 96/160 (60.00%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ-- 60
           MWSEPPH  E SSTP+L  S+L PEPPWMPTPPRLTLAS+PFLWEEAPGKPR  AGS+  
Sbjct: 1   MWSEPPHTPERSSTPSLVFSRLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPFAGSEIP 60

Query: 61  --APPSPPLPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKEIA- 120
             +PP   LPP  R L     +Q+ L SPTTVLDGPE  RA G  SKRWGSFR CKE+  
Sbjct: 61  WLSPPLGDLPPPPRLLN--EAIQSTLLSPTTVLDGPE--RAYG--SKRWGSFRMCKELVG 120

Query: 121 -----------VAGGGGGRLRRKRNVLLSVSSYSKSHFLV 145
                        GGG GR  +K    LSVSSY +SHFLV
Sbjct: 121 GGNDSLATVVDGGGGGSGRFGKKITPSLSVSSYGRSHFLV 154

[Close]

BLAST of MS006196 vs. ExPASy TrEMBL
Match: A0A5A7TKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00430 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 88/154 (57.14%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 1   MWSEPPHAT-EPSSTPTLSLSQL-LPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ 60
           M SEPPH T  P+STPTL LS L + + PWMPTPPRLTL S+PFLWEEAPGKPR    S+
Sbjct: 1   MCSEPPHTTHHPTSTPTLPLSWLPVLDSPWMPTPPRLTLVSVPFLWEEAPGKPRPSTASK 60

Query: 61  APPSPP-----LPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKE 120
                P     LPP  R L+   +    LPSPTTVLDG E  R G   SKRWGSFR C+ 
Sbjct: 61  VLWQVPVVAGKLPPPPRLLKNEVKQSNNLPSPTTVLDGDE--RGGMVGSKRWGSFRMCEN 120

Query: 121 IAVAGGGGGRLRRKRNV-LLSVSSY-SKSHFLVN 146
               GGG GR RR R+   LS+SSY + SHFLVN
Sbjct: 121 ---NGGGSGRFRRGRSASSLSLSSYATSSHFLVN 149

[Close]

BLAST of MS006196 vs. ExPASy TrEMBL
Match: A0A1S3AU39 (uncharacterized protein LOC103482969 OS=Cucumis melo OX=3656 GN=LOC103482969 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.7e-26
Identity = 87/154 (56.49%), Postives = 98/154 (63.64%), Query Frame = 0


Query: 1   MWSEPPHAT-EPSSTPTLSLSQL-LPEPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQ 60
           M SEPPH T  P+STPTL LS L + + PWMPTPPRLTL S+PFLWEEAPGKPR    S+
Sbjct: 1   MCSEPPHTTHHPTSTPTLPLSWLPVLDSPWMPTPPRLTLVSVPFLWEEAPGKPRPSTASK 60

Query: 61  APPSPP-----LPPGERTLELPPRLQTALPSPTTVLDGPEIRRAGGSNSKRWGSFRKCKE 120
                P     LPP  R L+   +    LPSPTTVLDG E  R G   SKRWGSFR C+ 
Sbjct: 61  VLWQVPVVAGKLPPPPRLLKNEVKQSNNLPSPTTVLDGDE--RGGMVGSKRWGSFRMCEN 120

Query: 121 IAVAGGGGGRLRRKRNV-LLSVSSY-SKSHFLVN 146
               GGG GR RR R+   LS+SSY + S FLVN
Sbjct: 121 ---NGGGSGRFRRGRSASSLSLSSYATSSPFLVN 149

[Close]

BLAST of MS006196 vs. TAIR 10
Match: AT5G53030.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 50/126 (39.68%), Postives = 59/126 (46.83%), Query Frame = 0


Query: 27  PWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAPPSPPLPPGERTLELPPRL-----QTA 86
           P + TPP     S+PFLWEEAPGKPR+    + P         R+LELPPRL      T 
Sbjct: 35  PGLATPPVNIAGSVPFLWEEAPGKPRRV---KKPARLNQKGVVRSLELPPRLVLPGESTT 94

Query: 87  L--PSPTTVLDGP------------------------------EIRRAGGSNSKRWGSFR 116
           +  PSPTTVLDGP                              E R  GGS+  RWGSF 
Sbjct: 95  VNEPSPTTVLDGPYDLRRRSLSLPRSAAVIRKLRGVPAPAPEKEERLVGGSS--RWGSFG 154

[Close]

BLAST of MS006196 vs. TAIR 10
Match: AT5G53030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 50/126 (39.68%), Postives = 59/126 (46.83%), Query Frame = 0


Query: 27  PWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAPPSPPLPPGERTLELPPRL-----QTA 86
           P + TPP     S+PFLWEEAPGKPR+    + P         R+LELPPRL      T 
Sbjct: 35  PGLATPPVNIAGSVPFLWEEAPGKPRRV---KKPARLNQKGVVRSLELPPRLVLPGESTT 94

Query: 87  L--PSPTTVLDGP------------------------------EIRRAGGSNSKRWGSFR 116
           +  PSPTTVLDGP                              E R  GGS+  RWGSF 
Sbjct: 95  VNEPSPTTVLDGPYDLRRRSLSLPRSAAVIRKLRGVPAPAPEKEERLVGGSS--RWGSFG 154

[Close]

BLAST of MS006196 vs. TAIR 10
Match: AT4G27810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 57/143 (39.86%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 25  EPPWMPTPPRLTLASIPFLWEEAPGKPRQCAGSQAPPSPPLPPGE-------RTLELPPR 84
           + P + TPP     S+PFLWEEAPGKPR  +    P +      E       R LELPPR
Sbjct: 29  DTPGLATPPVNIAGSVPFLWEEAPGKPR-VSDENKPLASKQNEREGGGGGVVRCLELPPR 88

Query: 85  L---QTALPSPTTVLDGP---------EIRRAGGSNSKRWGSFRKCKEIAVAGGGG---- 144
           L       PSPTTVLDGP          IRR+  ++  R+   R        GGGG    
Sbjct: 89  LFFPADDEPSPTTVLDGPYDVPRRSLSVIRRSERASEGRFEFSRSTNSRCCDGGGGTTVK 148

[Close]

BLAST of MS006196 vs. TAIR 10
Match: AT5G51680.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 34/88 (38.64%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 1  MWSEPPHATEPSSTPTLSLSQLLPEPPWMPTP---PRLTLASIPFLWEEAPGKPRQCAGS 60
          +W E P   + +  P  SL+  +P PP +P P   P   + S+PF WEE PGKP   A S
Sbjct: 25 IWEERPGFPKKNWQP--SLATFVPSPPPLPPPIPVPVKLVTSVPFRWEETPGKPLP-ASS 84

Query: 61 QAPPSPPLPPGERTLELPPRLQTALPSP 86
            PP  P PP          L+TA P+P
Sbjct: 85 NDPPQLPHPP----------LETATPTP 99

[Close]

BLAST of MS006196 vs. TAIR 10
Match: AT4G00950.1 (Protein of unknown function (DUF688) )

HSP 1 Score: 41.2 bits (95), Expect = 8.5e-04
Identity = 42/113 (37.17%), Postives = 53/113 (46.90%), Query Frame = 0


Query: 4   EPPHATEPSSTPTLSLSQLLPEPP-----WMPTPPRLTL-ASIPFLWEEAPGKPRQCAGS 63
           E    TE     T+    +LP  P      M +P   ++ AS+PF WEE PGKP+Q + S
Sbjct: 2   EAEKETEQEGNLTVMKLPVLPTKPNTHSHSMSSPIHSSISASVPFSWEEEPGKPKQHSTS 61

Query: 64  QAPPSPPLP-------PGE--RTLELPPRLQ---------TALPSPTTVLDGP 93
            +  S   P       P E  ++LELPPRL          T L SP TV DGP
Sbjct: 62  SSSSSSSSPLTSYSSSPFETHKSLELPPRLHLLEKDGGSVTKLHSPITVFDGP 114

The following BLAST results are available for this feature:

BLAST of MS006196 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158043.1	1.1e-74	99.31	uncharacterized protein At4g00950-like [Momordica charantia]	[more]
XP_022995989.1	1.0e-35	60.63	uncharacterized protein At4g00950-like [Cucurbita maxima]	[more]
KAG6605789.1	3.9e-35	60.00	hypothetical protein SDJN03_03106, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958693.1	3.9e-35	60.00	uncharacterized protein LOC111459844 [Cucurbita moschata]	[more]
XP_038875428.1	8.4e-30	54.22	uncharacterized protein LOC120067888 [Benincasa hispida]	[more]

BLAST of MS006196 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DV06	5.4e-75	99.31	uncharacterized protein At4g00950-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1K7H0	5.0e-36	60.63	uncharacterized protein At4g00950-like OS=Cucurbita maxima OX=3661 GN=LOC1114913...	[more]
A0A6J1H3S6	1.9e-35	60.00	uncharacterized protein LOC111459844 OS=Cucurbita moschata OX=3662 GN=LOC1114598...	[more]
A0A5A7TKS5	3.2e-27	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AU39	4.7e-26	56.49	uncharacterized protein LOC103482969 OS=Cucumis melo OX=3656 GN=LOC103482969 PE=...	[more]

BLAST of MS006196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53030.2	1.0e-09	39.68	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 ...	[more]
AT5G53030.1	1.0e-09	39.68	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 ...	[more]
AT4G27810.1	1.8e-09	39.86	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 ...	[more]
AT5G51680.1	1.3e-04	38.64	hydroxyproline-rich glycoprotein family protein	[more]
AT4G00950.1	8.5e-04	37.17	Protein of unknown function (DUF688)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR34371:SF2	DUF688 FAMILY PROTEIN	coord: 1..113
None	No IPR available	PANTHER	PTHR34371	OS01G0551000 PROTEIN	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006196.1	MS006196.1	mRNA