MS006160 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGACCAGTGAACTCGCTTGCACCTACGCTGCGTTGATTCTTCACGACGACGCCATCTCCGTCACTGTATTATTCTCCTTGATCTCTGTTTCTAATTATTTTGTATTGTTTCTCCGATTTGATTTCCAAGTACTCGATCTGTTTTTAATTTGTTCGATTTTAGGCGGAGAAGATTGTGACATTGGTTAAGGCTGCTGGCCTGACCGTGGAATCATACTGGCCCTCTCTGTTCGCTAAGTTGTCGTCAAAAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTTCTGCTCCTCTGTCCATGGCATCTTCCAGTTCCGCCGATGCCTCTGCCGCTCCCGCTCCTGCTCCTGCGCCCGTCGAGAAGAAGGTACCG ATGTCGACCAGTGAACTCGCTTGCACCTACGCTGCGTTGATTCTTCACGACGACGCCATCTCCGTCACTGCGGAGAAGATTGTGACATTGGTTAAGGCTGCTGGCCTGACCGTGGAATCATACTGGCCCTCTCTGTTCGCTAAGTTGTCGTCAAAAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTTCTGCTCCTCTGTCCATGGCATCTTCCAGTTCCGCCGATGCCTCTGCCGCTCCCGCTCCTGCTCCTGCGCCCGTCGAGAAGAAGGTACCG ATGTCGACCAGTGAACTCGCTTGCACCTACGCTGCGTTGATTCTTCACGACGACGCCATCTCCGTCACTGCGGAGAAGATTGTGACATTGGTTAAGGCTGCTGGCCTGACCGTGGAATCATACTGGCCCTCTCTGTTCGCTAAGTTGTCGTCAAAAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTTCTGCTCCTCTGTCCATGGCATCTTCCAGTTCCGCCGATGCCTCTGCCGCTCCCGCTCCTGCTCCTGCGCCCGTCGAGAAGAAGGTACCG MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKVP Homology
BLAST of MS006160 vs. NCBI nr
Match: XP_022138164.1 (60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]) HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of MS006160 vs. NCBI nr
Match: XP_022138163.1 (60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]) HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS006160 vs. NCBI nr
Match: CAA2623626.1 (unnamed protein product [Spirodela intermedia] >CAA7399610.1 unnamed protein product [Spirodela intermedia]) HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22 Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 0
BLAST of MS006160 vs. NCBI nr
Match: MBA0801017.1 (hypothetical protein [Gossypium harknessii]) HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22 Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0
BLAST of MS006160 vs. NCBI nr
Match: XP_022736496.1 (60S acidic ribosomal protein P1-like [Durio zibethinus]) HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22 Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 0
BLAST of MS006160 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 1.9e-20 Identity = 57/95 (60.00%), Postives = 73/95 (76.84%), Query Frame = 0
BLAST of MS006160 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 2.7e-19 Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 0
BLAST of MS006160 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2) HSP 1 Score: 91.7 bits (226), Expect = 5.0e-18 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of MS006160 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2) HSP 1 Score: 91.3 bits (225), Expect = 6.6e-18 Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 0
BLAST of MS006160 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2) HSP 1 Score: 88.6 bits (218), Expect = 4.3e-17 Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of MS006160 vs. ExPASy TrEMBL
Match: A0A6J1C9A3 (60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 5.9e-38 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of MS006160 vs. ExPASy TrEMBL
Match: A0A6J1CC92 (60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS006160 vs. ExPASy TrEMBL
Match: A0A7I8KP78 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07009550 PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22 Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 0
BLAST of MS006160 vs. ExPASy TrEMBL
Match: A0A7J9GTV1 (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_011410 PE=3 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22 Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0
BLAST of MS006160 vs. ExPASy TrEMBL
Match: A0A6P5Y931 (60S acidic ribosomal protein P1-like OS=Durio zibethinus OX=66656 GN=LOC111289597 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22 Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 0
BLAST of MS006160 vs. TAIR 10
Match: AT5G24510.1 (60S acidic ribosomal protein family ) HSP 1 Score: 95.1 bits (235), Expect = 3.2e-20 Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 0
BLAST of MS006160 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family ) HSP 1 Score: 91.7 bits (226), Expect = 3.6e-19 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of MS006160 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family ) HSP 1 Score: 91.7 bits (226), Expect = 3.6e-19 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of MS006160 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family ) HSP 1 Score: 91.3 bits (225), Expect = 4.7e-19 Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 0
BLAST of MS006160 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family ) HSP 1 Score: 91.3 bits (225), Expect = 4.7e-19 Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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