MS005260 (gene) Bitter gourd (TR) v1

Overview


Name	MS005260
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Methyltransferase-like protein
Location	scaffold83: 377574 .. 377986 (+)
RNA-Seq Expression	MS005260
Synteny	MS005260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAGCCGCTCAATATTTTTCCAAAGACTTCGATTGGGAGGATCTTCGAACCCGGGTCGAGAATGACCCGTTTTTGCGACACCATTTGCTTCCCTTTGAGCCCTCCGATCGCTCTCCTTCTGTTTCCGCCGAAGCCGATTCAGACGCCTGGAAGCGCTTTCACCTTCGCCACTCCTCTGGCAAGTTCTTCAAGGTTTTCATTCCCCTTTAGCAATTGGAACATTTTGTATTAACCTAACTTTTTCGTTTTTCTCAGCTCGGTTGTGATTTTTGTTCTGTACGTTTGTTTGGATTCAGGAAAGGCGATATTTGTTGAAGGAATTCCCTGAATTGGTTTCCTGTAAGAAGTGTTCCAAACTCTTGGAGGTGGGTTGCGGTAATGGAAGCACTGCTCTTCCAATCTTGCGG

mRNA sequence

ATGGGGGAAGCCGCTCAATATTTTTCCAAAGACTTCGATTGGGAGGATCTTCGAACCCGGGTCGAGAATGACCCGTTTTTGCGACACCATTTGCTTCCCTTTGAGCCCTCCGATCGCTCTCCTTCTGTTTCCGCCGAAGCCGATTCAGACGCCTGGAAGCGCTTTCACCTTCGCCACTCCTCTGGCAAGTTCTTCAAGGAAAGGCGATATTTGTTGAAGGAATTCCCTGAATTGGTTTCCTGTAAGAAGTGTTCCAAACTCTTGGAGGTGGGTTGCGGTAATGGAAGCACTGCTCTTCCAATCTTGCGG

Coding sequence (CDS)

ATGGGGGAAGCCGCTCAATATTTTTCCAAAGACTTCGATTGGGAGGATCTTCGAACCCGGGTCGAGAATGACCCGTTTTTGCGACACCATTTGCTTCCCTTTGAGCCCTCCGATCGCTCTCCTTCTGTTTCCGCCGAAGCCGATTCAGACGCCTGGAAGCGCTTTCACCTTCGCCACTCCTCTGGCAAGTTCTTCAAGGAAAGGCGATATTTGTTGAAGGAATTCCCTGAATTGGTTTCCTGTAAGAAGTGTTCCAAACTCTTGGAGGTGGGTTGCGGTAATGGAAGCACTGCTCTTCCAATCTTGCGG

Protein sequence

MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHSSGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR

Homology

[Close]

BLAST of MS005260 vs. NCBI nr
Match: XP_022143187.1 (methyltransferase-like protein 6 isoform X3 [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS
Sbjct: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. NCBI nr
Match: XP_022143185.1 (methyltransferase-like protein 6 isoform X1 [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS
Sbjct: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. NCBI nr
Match: XP_022999088.1 (methyltransferase-like protein 6 [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAA+YFSKDFDWE+LR RVENDP L++HLLPF+P D  PSVSAEADSDAW RFHLRHS
Sbjct: 1   MGEAAEYFSKDFDWEELRIRVENDPLLQYHLLPFQPCDSIPSVSAEADSDAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKK  K+LEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKNCKVLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. NCBI nr
Match: XP_023545623.1 (methyltransferase-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAA+YFSKDFDWE+LR RVENDP L++HLLPF+P D  PSVSAEADSDAW RFHLRHS
Sbjct: 1   MGEAAEYFSKDFDWEELRIRVENDPLLQYHLLPFQPCDSIPSVSAEADSDAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKK  K+LEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKNCKVLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. NCBI nr
Match: XP_022946675.1 (methyltransferase-like protein 6 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAA+YFSKDFDWE+LR RVENDP L++HLLPF+P D  PSVSAEADSDAW RFHLRHS
Sbjct: 1   MGEAAEYFSKDFDWEELRIRVENDPLLQYHLLPFQPCDSIPSVSAEADSDAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKK  K+LEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKNCKVLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. ExPASy Swiss-Prot
Match: Q9P7L6 (Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC21C3.07c PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 8.9e-05
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 52  WKRFHLRHSSGKFFKERRYLLKEFPELVSCKK----CSKLLEVGCGNGSTALPILR 104
           W +F+ + + GKFF  RR++ +EFPEL+   K       +LE+GCG G+T  PIL+
Sbjct: 83  WDQFYGK-NEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNTIWPILK 137

[Close]

BLAST of MS005260 vs. ExPASy TrEMBL
Match: A0A6J1CQ24 (Methyltransferase-like protein OS=Momordica charantia OX=3673 GN=LOC111013116 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS
Sbjct: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. ExPASy TrEMBL
Match: A0A6J1CN40 (Methyltransferase-like protein OS=Momordica charantia OX=3673 GN=LOC111013116 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS
Sbjct: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. ExPASy TrEMBL
Match: A0A6J1KIM0 (Methyltransferase-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493570 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.1e-45
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAA+YFSKDFDWE+LR RVENDP L++HLLPF+P D  PSVSAEADSDAW RFHLRHS
Sbjct: 1   MGEAAEYFSKDFDWEELRIRVENDPLLQYHLLPFQPCDSIPSVSAEADSDAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKK  K+LEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKNCKVLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. ExPASy TrEMBL
Match: A0A6J1G4K4 (Methyltransferase-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450669 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.1e-45
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAA+YFSKDFDWE+LR RVENDP L++HLLPF+P D  PSVSAEADSDAW RFHLRHS
Sbjct: 1   MGEAAEYFSKDFDWEELRIRVENDPLLQYHLLPFQPCDSIPSVSAEADSDAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKK  K+LEVGCGNGSTALPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKNCKVLEVGCGNGSTALPILR 103

[Close]

BLAST of MS005260 vs. ExPASy TrEMBL
Match: A0A5D3BFS2 (Methyltransferase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001150 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.5e-43
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MGEAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAEADSDAWKRFHLRHS 60
           MGEAA+YFSKDF W+DLR RVENDP L++HLLPFEPS+  PSVS EADS+AW RFHLRHS
Sbjct: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           SGKFFKERRYLLKEFPELVSCKK  K+LEVGCGNGST +PILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 103

[Close]

BLAST of MS005260 vs. TAIR 10
Match: AT1G54650.1 (Methyltransferase family protein )

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-30
Identity = 66/102 (64.71%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 3   EAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAE-ADSDAWKRFHLRHSS 62
           EA +Y SKDF+WE L+  VENDP L HHL          ++S    DS  W+ FH RHSS
Sbjct: 6   EAGEYHSKDFEWEFLKNIVENDPSLSHHL-----HHHHQNLSKYLPDSQPWQDFHSRHSS 65

Query: 63  GKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           GKFFKERRYLLKEFPELVSC + SKLLE+GCGNGST LPILR
Sbjct: 66  GKFFKERRYLLKEFPELVSCGENSKLLEIGCGNGSTVLPILR 102

[Close]

BLAST of MS005260 vs. TAIR 10
Match: AT1G54650.2 (Methyltransferase family protein )

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-30
Identity = 66/102 (64.71%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 3   EAAQYFSKDFDWEDLRTRVENDPFLRHHLLPFEPSDRSPSVSAE-ADSDAWKRFHLRHSS 62
           EA +Y SKDF+WE L+  VENDP L HHL          ++S    DS  W+ FH RHSS
Sbjct: 6   EAGEYHSKDFEWEFLKNIVENDPSLSHHL-----HHHHQNLSKYLPDSQPWQDFHSRHSS 65

Query: 63  GKFFKERRYLLKEFPELVSCKKCSKLLEVGCGNGSTALPILR 104
           GKFFKERRYLLKEFPELVSC + SKLLE+GCGNGST LPILR
Sbjct: 66  GKFFKERRYLLKEFPELVSCGENSKLLEIGCGNGSTVLPILR 102

[Close]

BLAST of MS005260 vs. TAIR 10
Match: AT2G26200.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 28/81 (34.57%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 25  PFLRHHLLPFEPSDRSPSVSAEADSDA---WKRFHLRHSSGKFFKERRYLLKEFPELVSC 84
           P  +  + P   +  SP    + + DA   W  F+ +H   +FFK+R YL KE+    S 
Sbjct: 14  PIEKLQIYPTANAGVSPFWRDKYERDAKKYWDIFY-KHHGDRFFKDRHYLDKEWNSYFSV 73

Query: 85  KKCSKLLEVGCGNGSTALPIL 103
              S +LEVGCG G+T  P++
Sbjct: 74  SGKSVILEVGCGAGNTIFPLI 93

The following BLAST results are available for this feature:

BLAST of MS005260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143187.1	2.2e-53	100.00	methyltransferase-like protein 6 isoform X3 [Momordica charantia]	[more]
XP_022143185.1	2.2e-53	100.00	methyltransferase-like protein 6 isoform X1 [Momordica charantia]	[more]
XP_022999088.1	8.4e-45	86.41	methyltransferase-like protein 6 [Cucurbita maxima]	[more]
XP_023545623.1	8.4e-45	86.41	methyltransferase-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022946675.1	8.4e-45	86.41	methyltransferase-like protein 6 [Cucurbita moschata]	[more]

BLAST of MS005260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9P7L6	8.9e-05	42.86	Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyc...	[more]

BLAST of MS005260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ24	1.1e-53	100.00	Methyltransferase-like protein OS=Momordica charantia OX=3673 GN=LOC111013116 PE...	[more]
A0A6J1CN40	1.1e-53	100.00	Methyltransferase-like protein OS=Momordica charantia OX=3673 GN=LOC111013116 PE...	[more]
A0A6J1KIM0	4.1e-45	86.41	Methyltransferase-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493570 PE=3 ...	[more]
A0A6J1G4K4	4.1e-45	86.41	Methyltransferase-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450669 PE=...	[more]
A0A5D3BFS2	8.5e-43	82.52	Methyltransferase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MS005260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54650.1	3.7e-30	64.71	Methyltransferase family protein	[more]
AT1G54650.2	3.7e-30	64.71	Methyltransferase family protein	[more]
AT2G26200.1	1.4e-05	34.57	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026113	Methyltransferase-like	PANTHER	PTHR22809	METHYLTRANSFERASE-RELATED	coord: 3..103
None	No IPR available	PANTHER	PTHR22809:SF5	O-METHYLTRANSFERASE 3	coord: 3..103
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 47..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005260.1	MS005260.1	mRNA