MS005071 (gene) Bitter gourd (TR) v1

Overview


Name	MS005071
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L12
Location	scaffold176: 2456575 .. 2456864 (-)
RNA-Seq Expression	MS005071
Synteny	MS005071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAGCTCACGGTCCAGAATCGTCAAGCGAAGGTGTCGGTGGTGCCCTCTGGTCATCAGAGCGCGACCGGAAGAAGACGAAGAATATTAAGCACAACGGAAACGTTTCGCTAGACGAAGTGATCGAGATGGCGAGGATCATGCGGCTAAGATCGATGGCGACGGATTTGTCAGATACAGTGAAGGAGATTTCGGGAACTTGTGTATCGGTTGGGTGCACCGTTGACGGGAATGATCCAAAAGACCTGCAGCAAGAGATCAGTGACGGCGATGTTGAAATCTCTCGGGAT

mRNA sequence

GTCAAGCTCACGGTCCAGAATCGTCAAGCGAAGGTGTCGGTGGTGCCCTCTTCATCAGAGCGCGACCGGAAGAAGACGAAGAATATTAAGCACAACGGAAACGTTTCGCTAGACGAAGTGATCGAGATGGCGAGGATCATGCGGCTAAGATCGATGGCGACGGATTTGTCAGATACAGTGAAGGAGATTTCGGGAACTTGTGTATCGGTTGGGTGCACCGTTGACGGGAATGATCCAAAAGACCTGCAGCAAGAGATCAGTGACGGCGATGTTGAAATCTCTCGGGAT

Coding sequence (CDS)

GTCAAGCTCACGGTCCAGAATCGTCAAGCGAAGGTGTCGGTGGTGCCCTCTTCATCAGAGCGCGACCGGAAGAAGACGAAGAATATTAAGCACAACGGAAACGTTTCGCTAGACGAAGTGATCGAGATGGCGAGGATCATGCGGCTAAGATCGATGGCGACGGATTTGTCAGATACAGTGAAGGAGATTTCGGGAACTTGTGTATCGGTTGGGTGCACCGTTGACGGGAATGATCCAAAAGACCTGCAGCAAGAGATCAGTGACGGCGATGTTGAAATCTCTCGGGAT

Protein sequence

VKLTVQNRQAKVSVVPSSSERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD

Homology

[Close]

BLAST of MS005071 vs. NCBI nr
Match: XP_034702982.1 (60S ribosomal protein L12-like [Vitis riparia])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKSLKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS TVKEI GTCVSVGCTVDGNDPKDLQQEI+DGDVE+  D
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGNDPKDLQQEIADGDVEVPED 166

[Close]

BLAST of MS005071 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima] >XP_038903166.1 60S ribosomal protein L12-1 [Benincasa hispida] >KAG6580604.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017359.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGDVEI +D
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of MS005071 vs. NCBI nr
Match: XP_004137822.1 (60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein Csa_001517 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGDVEI +D
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of MS005071 vs. NCBI nr
Match: XP_042954357.1 (60S ribosomal protein L12-like [Carya illinoinensis] >KAG2673923.1 hypothetical protein I3760_13G111500 [Carya illinoinensis] >KAG6631771.1 hypothetical protein CIPAW_13G113300 [Carya illinoinensis] >KAG6681891.1 hypothetical protein I3842_13G112000 [Carya illinoinensis] >KAG7950171.1 hypothetical protein I3843_13G098700 [Carya illinoinensis])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+A++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMRHR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI+DGDVEIS D
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEISLD 166

[Close]

BLAST of MS005071 vs. NCBI nr
Match: KAE9587950.1 (putative ribosomal protein L11/L12 [Lupinus albus] >KAF1882814.1 hypothetical protein Lal_00002995 [Lupinus albus])

HSP 1 Score: 151.0 bits (380), Expect = 5.3e-33
Identity = 81/106 (76.42%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI DGDVE+ +D
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEVPQD 166

[Close]

BLAST of MS005071 vs. ExPASy Swiss-Prot
Match: O50003 (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-32
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKH+G++SLD+VIE+A+IM+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA +L+ TVKEI  TCVSVGCTVDG DPKDLQQEI+DGDVEI  D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]

BLAST of MS005071 vs. ExPASy Swiss-Prot
Match: P50883 (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-31
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEI 94
           S+A +LS TV+EI GTCVSVGCTVDG DPKD+QQEI DG+VEI
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163

[Close]

BLAST of MS005071 vs. ExPASy Swiss-Prot
Match: Q9FF52 (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-31
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+VIE+A+IMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           S+A +LS TVKEI GTCVSVGCTVDG DPKDLQ+EI+ GD++I  +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of MS005071 vs. ExPASy Swiss-Prot
Match: Q9LFH5 (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-31
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEI 94
           S+A +LS TV+EI GTCVSVGCTVDG DPKDLQQEI +G++EI
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEI 163

[Close]

BLAST of MS005071 vs. ExPASy Swiss-Prot
Match: P0CT83 (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLT+QNRQA VSVVPS+S           RDRKK KN+ H+GNVSLDE+IE+AR MR +
Sbjct: 60  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 119

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           S+A +LS TVKEI GT  SVGCTVDG +P D+Q+EI +G++EI ++
Sbjct: 120 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]

BLAST of MS005071 vs. ExPASy TrEMBL
Match: A0A6J1J2K8 (60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGDVEI +D
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of MS005071 vs. ExPASy TrEMBL
Match: A0A0A0LAX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGDVEI +D
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of MS005071 vs. ExPASy TrEMBL
Match: A0A6J1F4X7 (60S ribosomal protein L12-1-like OS=Cucurbita moschata OX=3662 GN=LOC111442375 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGDVEI +D
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of MS005071 vs. ExPASy TrEMBL
Match: A0A6A5N6A4 (Putative ribosomal protein L11/L12 OS=Lupinus albus OX=3870 GN=Lal_00002995 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-33
Identity = 81/106 (76.42%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI DGDVE+ +D
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEVPQD 166

[Close]

BLAST of MS005071 vs. ExPASy TrEMBL
Match: A5C9G0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g04300 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-33
Identity = 81/106 (76.42%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKSLKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           SMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI+DGDVE+  D
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEVPED 166

[Close]

BLAST of MS005071 vs. TAIR 10
Match: AT2G37190.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 136.7 bits (343), Expect = 9.6e-33
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEI 94
           S+A +LS TV+EI GTCVSVGCTVDG DPKD+QQEI DG+VEI
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEI 163

[Close]

BLAST of MS005071 vs. TAIR 10
Match: AT5G60670.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-32
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+VIE+A+IMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD 97
           S+A +LS TVKEI GTCVSVGCTVDG DPKDLQ+EI+ GD++I  +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of MS005071 vs. TAIR 10
Match: AT3G53430.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-32
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLR 60
           VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 61  SMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEI 94
           S+A +LS TV+EI GTCVSVGCTVDG DPKDLQQEI +G++EI
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEI 163

The following BLAST results are available for this feature:

BLAST of MS005071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034702982.1	1.1e-33	77.36	60S ribosomal protein L12-like [Vitis riparia]	[more]
XP_022935531.1	4.0e-33	77.36	60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso...	[more]
XP_004137822.1	4.0e-33	77.36	60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein C...	[more]
XP_042954357.1	4.0e-33	77.36	60S ribosomal protein L12-like [Carya illinoinensis] >KAG2673923.1 hypothetical ...	[more]
KAE9587950.1	5.3e-33	76.42	putative ribosomal protein L11/L12 [Lupinus albus] >KAF1882814.1 hypothetical pr...	[more]

BLAST of MS005071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O50003	2.7e-32	71.70	60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1	[more]
P50883	1.4e-31	70.87	60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2	[more]
Q9FF52	1.8e-31	67.92	60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1	[more]
Q9LFH5	3.0e-31	69.90	60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1	[more]
P0CT83	1.7e-26	60.38	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of MS005071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2K8	2.0e-33	77.36	60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=...	[more]
A0A0A0LAX8	2.0e-33	77.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1	[more]
A0A6J1F4X7	2.0e-33	77.36	60S ribosomal protein L12-1-like OS=Cucurbita moschata OX=3662 GN=LOC111442375 P...	[more]
A0A6A5N6A4	2.6e-33	76.42	Putative ribosomal protein L11/L12 OS=Lupinus albus OX=3870 GN=Lal_00002995 PE=3...	[more]
A5C9G0	2.6e-33	76.42	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g04300 PE=3 SV=...	[more]

BLAST of MS005071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37190.1	9.6e-33	70.87	Ribosomal protein L11 family protein	[more]
AT5G60670.1	1.3e-32	67.92	Ribosomal protein L11 family protein	[more]
AT3G53430.1	2.1e-32	69.90	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 1..75 e-value: 0.0016 score: 0.0
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..95
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 15..94 e-value: 8.4E-30 score: 104.8
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 20..79
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 21..74 e-value: 8.0E-10 score: 39.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR11661:SF28	60S RIBOSOMAL PROTEIN L12-3	coord: 1..95
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 61..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005071.1	MS005071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome