MS004870 (gene) Bitter gourd (TR) v1

Overview
NameMS004870
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCyclin
Locationscaffold176: 1107701 .. 1108509 (+)
RNA-Seq ExpressionMS004870
SyntenyMS004870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGCGGCAGCGGCAGTGAGTTGGCGGAGGGCGATCATGCGGCGGCGGAGCCAACCCCGAGAGTGCTCATGATACTGTCGTTGGTGCTGGAGCGGCTGGTGGCTCGCAACGACGCCCTCATAAATGGGGTGAGGGAGCTGCCGCTGGAGGAGTCCGGGTCCGGGTGCTACCACAGCCACATCGGGAACAGCTTCAACGCGTTCCAGGGAGTGAGACCGCCCGGCATCAGCATATTGAAGTACTTGGAGAGAATATACAAGTACACCAATTGCAGCCCTTCTTGCCTCGTTGTTGGCTTCGTTTACATCGACAGGCTCCTCCATCGACACCCCCATTCCCTCGTCGCCTCCTTGAATGTCCATAGGCTTCTCGTCACCAGCGTCATGGTTGCCTCTAAGATGCTCGACGATGTGTCAGTCTTCTTTTTACTTATATAATAATCCAAATTGAATAGTTAATAGCGAGTAATCTGATTATAATTAAATTCTGCCAATTTGATTTGAGATGATGTTATTGATGGCTCAGGCATTACAACAATGCGTTCTACGCGCGGGTGGGAGGGGTGACCAAAGGGGAGCTCAACAAGCTGGAATTGGAGCTGCTTTTTCTCTTGGATTTTGACCTCACCGTCACCGCGCGGGCTTTCCAGACCTATTGCTTCCACTTGGAGAAGGAGATGCTGTTGAACGGTAACGGAGAGATGCACAGGATCCAAACGCCGCTGCCGCTCCTCGTCTCCAATAGCTTGGACGACGTGTCGGAAATTTCCGTGGACGACAGTACTCTTATTTCTTCTTCGCCGCCC

mRNA sequence

ATGTTAAGCGGCAGCGGCAGTGAGTTGGCGGAGGGCGATCATGCGGCGGCGGAGCCAACCCCGAGAGTGCTCATGATACTGTCGTTGGTGCTGGAGCGGCTGGTGGCTCGCAACGACGCCCTCATAAATGGGGTGAGGGAGCTGCCGCTGGAGGAGTCCGGGTCCGGGTGCTACCACAGCCACATCGGGAACAGCTTCAACGCGTTCCAGGGAGTGAGACCGCCCGGCATCAGCATATTGAAGTACTTGGAGAGAATATACAAGTACACCAATTGCAGCCCTTCTTGCCTCGTTGTTGGCTTCGTTTACATCGACAGGCTCCTCCATCGACACCCCCATTCCCTCGTCGCCTCCTTGAATGTCCATAGGCTTCTCGTCACCAGCGTCATGGTTGCCTCTAAGATGCTCGACGATGTGCATTACAACAATGCGTTCTACGCGCGGGTGGGAGGGGTGACCAAAGGGGAGCTCAACAAGCTGGAATTGGAGCTGCTTTTTCTCTTGGATTTTGACCTCACCGTCACCGCGCGGGCTTTCCAGACCTATTGCTTCCACTTGGAGAAGGAGATGCTGTTGAACGGTAACGGAGAGATGCACAGGATCCAAACGCCGCTGCCGCTCCTCGTCTCCAATAGCTTGGACGACGTGTCGGAAATTTCCGTGGACGACAGTACTCTTATTTCTTCTTCGCCGCCC

Coding sequence (CDS)

ATGTTAAGCGGCAGCGGCAGTGAGTTGGCGGAGGGCGATCATGCGGCGGCGGAGCCAACCCCGAGAGTGCTCATGATACTGTCGTTGGTGCTGGAGCGGCTGGTGGCTCGCAACGACGCCCTCATAAATGGGGTGAGGGAGCTGCCGCTGGAGGAGTCCGGGTCCGGGTGCTACCACAGCCACATCGGGAACAGCTTCAACGCGTTCCAGGGAGTGAGACCGCCCGGCATCAGCATATTGAAGTACTTGGAGAGAATATACAAGTACACCAATTGCAGCCCTTCTTGCCTCGTTGTTGGCTTCGTTTACATCGACAGGCTCCTCCATCGACACCCCCATTCCCTCGTCGCCTCCTTGAATGTCCATAGGCTTCTCGTCACCAGCGTCATGGTTGCCTCTAAGATGCTCGACGATGTGCATTACAACAATGCGTTCTACGCGCGGGTGGGAGGGGTGACCAAAGGGGAGCTCAACAAGCTGGAATTGGAGCTGCTTTTTCTCTTGGATTTTGACCTCACCGTCACCGCGCGGGCTTTCCAGACCTATTGCTTCCACTTGGAGAAGGAGATGCTGTTGAACGGTAACGGAGAGATGCACAGGATCCAAACGCCGCTGCCGCTCCTCGTCTCCAATAGCTTGGACGACGTGTCGGAAATTTCCGTGGACGACAGTACTCTTATTTCTTCTTCGCCGCCC

Protein sequence

MLSGSGSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP
Homology
BLAST of MS004870 vs. NCBI nr
Match: XP_022140365.1 (cyclin-U1-1 [Momordica charantia])

HSP 1 Score: 457.6 bits (1176), Expect = 6.4e-125
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0

Query: 1   MLSGSGSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHS 60
           MLSGSGSEL EGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHS
Sbjct: 1   MLSGSGSELVEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHS 60

Query: 61  HIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLN 120
           HIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLN
Sbjct: 61  HIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLN 120

Query: 121 VHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQ 180
           VHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQ
Sbjct: 121 VHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQ 180

Query: 181 TYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           TYCFHLEKEMLLNGNGEMHRIQ PLPLLVSNSLDDVSEISVDDSTLISSSPP
Sbjct: 181 TYCFHLEKEMLLNGNGEMHRIQMPLPLLVSNSLDDVSEISVDDSTLISSSPP 232

BLAST of MS004870 vs. NCBI nr
Match: KAG6604845.1 (Cyclin-U1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.8 bits (865), Expect = 7.4e-89
Identity = 179/235 (76.17%), Postives = 203/235 (86.38%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGC 60
           ML+G+    + LAEGD+  AEPTPRVL+IL+ VL+RLVARND +++G+    +EES S C
Sbjct: 1   MLTGNDFPANGLAEGDN-VAEPTPRVLIILACVLDRLVARNDRIVDGITH-QIEES-SSC 60

Query: 61  YHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVA 120
             SHIGNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP+SLV 
Sbjct: 61  STSHIGNSFNAFHGVRAPAISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPNSLVI 120

Query: 121 SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTAR 180
           SLNVHRLLVTSVMVASK+LDDVHYNNAFYARVGGV K ELNKLELELLFLLDF +TV++R
Sbjct: 121 SLNVHRLLVTSVMVASKILDDVHYNNAFYARVGGVNKAELNKLELELLFLLDFGVTVSSR 180

Query: 181 AFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           AF+TYC HLEKEMLLNGNGE+ RI+   P++ +NSLDDVSEISVDD TL SSSPP
Sbjct: 181 AFETYCLHLEKEMLLNGNGELQRIER--PIMATNSLDDVSEISVDD-TLASSSPP 229

BLAST of MS004870 vs. NCBI nr
Match: XP_023534097.1 (cyclin-U1-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-88
Identity = 180/235 (76.60%), Postives = 203/235 (86.38%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGC 60
           ML+G+    + LAEGD+  AEPTPRVL+IL+ VL+RLVARND +++G+    +EES S C
Sbjct: 1   MLTGNDFPANGLAEGDN-VAEPTPRVLIILACVLDRLVARNDRIVDGITH-QIEES-SSC 60

Query: 61  YHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVA 120
             SHIGNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP+SLV 
Sbjct: 61  GTSHIGNSFNAFHGVRAPAISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPNSLVI 120

Query: 121 SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTAR 180
           SLNVHRLLVTSVMVASK+LDDVHYNNAFYARVGGV K ELNKLELELLFLLDF +TV++R
Sbjct: 121 SLNVHRLLVTSVMVASKILDDVHYNNAFYARVGGVNKVELNKLELELLFLLDFGVTVSSR 180

Query: 181 AFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           AF+TYC HLEKEMLLNGNGE+ RI+   PL+ +NSLDDVSEISVDD TL SSSPP
Sbjct: 181 AFETYCLHLEKEMLLNGNGELQRIER--PLMATNSLDDVSEISVDD-TLASSSPP 229

BLAST of MS004870 vs. NCBI nr
Match: XP_022947783.1 (cyclin-U1-1-like [Cucurbita moschata])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 179/235 (76.17%), Postives = 203/235 (86.38%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGC 60
           ML+G+    + LAEGD+  AEPTPRVL+IL+ VL+RLVARND +++G+    +EES S C
Sbjct: 1   MLTGNDFPANGLAEGDN-VAEPTPRVLIILACVLDRLVARNDRIVDGITH-QIEES-SSC 60

Query: 61  YHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVA 120
             SHIGNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP+SLV 
Sbjct: 61  GTSHIGNSFNAFHGVRAPAISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPNSLVI 120

Query: 121 SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTAR 180
           SLN+HRLLVTSVMVASK+LDDVHYNNAFYARVGGV K ELNKLELELLFLLDF +TV++R
Sbjct: 121 SLNIHRLLVTSVMVASKILDDVHYNNAFYARVGGVNKVELNKLELELLFLLDFGVTVSSR 180

Query: 181 AFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           AF+TYC HLEKEMLLNGNGE+ RI+   PL+ +NSLDDVSEISVDD TL SSSPP
Sbjct: 181 AFETYCLHLEKEMLLNGNGELQRIER--PLMATNSLDDVSEISVDD-TLASSSPP 229

BLAST of MS004870 vs. NCBI nr
Match: KAG7034959.1 (Cyclin-U1-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 179/235 (76.17%), Postives = 203/235 (86.38%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGC 60
           ML+G+    + LAEGD+  AEPTPRVL+IL+ VL+RLVARND +++G+    +EES S C
Sbjct: 1   MLTGNDFPANGLAEGDN-VAEPTPRVLIILACVLDRLVARNDRIVDGITH-QIEES-SSC 60

Query: 61  YHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVA 120
             SHIGNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP+SLV 
Sbjct: 61  STSHIGNSFNAFHGVRAPAISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPNSLVI 120

Query: 121 SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTAR 180
           SLNVHRLLVTSVMVASK+LDDVHYNNAFYARVGGV K ELNKLELELLFLLDF +TV++R
Sbjct: 121 SLNVHRLLVTSVMVASKILDDVHYNNAFYARVGGVNKVELNKLELELLFLLDFGVTVSSR 180

Query: 181 AFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           AF+TYC HLEKEMLLNGNGE+ RI+   P++ +NSLDDVSEISVDD TL SSSPP
Sbjct: 181 AFETYCLHLEKEMLLNGNGELQRIER--PIMATNSLDDVSEISVDD-TLASSSPP 229

BLAST of MS004870 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.1e-58
Identity = 119/197 (60.41%), Postives = 142/197 (72.08%), Query Frame = 0

Query: 1   MLSGSGSELAE---GDHAAAE-PTPRVLMILSLVLERLVARNDALINGVRELPLEESGSG 60
           ML+ +G +  +   G  +A E  TPRVL I+S V+E+LVARN+ L    +          
Sbjct: 1   MLTAAGDDELDPVVGPESATEAATPRVLTIISHVMEKLVARNEWLAKQTK---------- 60

Query: 61  CYHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLV 120
                 G S  AF GVR P ISI KYLERIYKYT CSP+C VVG+VYIDRL H+HP SLV
Sbjct: 61  ----GFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLV 120

Query: 121 ASLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTA 180
            SLNVHRLLVT VM+A+K+LDDVHYNN FYARVGGV+  +LNK+ELELLFLLDF +TV+ 
Sbjct: 121 VSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSF 180

Query: 181 RAFQTYCFHLEKEMLLN 194
           R F++YCFHLEKEM LN
Sbjct: 181 RVFESYCFHLEKEMQLN 183

BLAST of MS004870 vs. ExPASy Swiss-Prot
Match: Q0J9W0 (Cyclin-P1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP1-1 PE=3 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 9.5e-39
Identity = 86/197 (43.65%), Postives = 124/197 (62.94%), Query Frame = 0

Query: 3   SGSGSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHI 62
           + +G E++     A+ P P  L +++  ++RLVARNDA    V  L    SG G   + +
Sbjct: 5   AAAGGEMSRQKATASAPPPPELDMVARAVQRLVARNDA----VEAL----SGGGEAAAGL 64

Query: 63  GNSFNAFQGVR---PPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASL 122
           G    AF+  R    P I + +YLER+++Y    P C VV + Y+D   HR P + VAS 
Sbjct: 65  GAGMAAFEAARGAPAPRIGVAQYLERVHRYAGLEPECYVVAYAYVDMAAHRRPAAAVASR 124

Query: 123 NVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAF 182
           NVHRLL+  ++VASK+LDD H+NNAF+ARVGGV+  E+N+LELELL +LDF++ ++ R +
Sbjct: 125 NVHRLLLACLLVASKVLDDFHHNNAFFARVGGVSNAEMNRLELELLAVLDFEVMLSHRVY 184

Query: 183 QTYCFHLEKEMLLNGNG 197
           + Y  HLEKE   +G G
Sbjct: 185 ELYREHLEKEARRDGGG 193

BLAST of MS004870 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-38
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 0

Query: 17  AEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPG 76
           AE  PRV+ ILS +L+R+  RNDA            + +         + +AFQG+  P 
Sbjct: 7   AEAVPRVVAILSSLLQRVAERNDA------------AAAAAAVGEEAAAVSAFQGLTKPA 66

Query: 77  ISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKML 136
           ISI  YLERI+++ NCSPSC VV ++Y+DR L R P   V S NVHRLL+TSV+ A K +
Sbjct: 67  ISIGGYLERIFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFV 126

Query: 137 DDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEM 191
           DD+ YNNA++ARVGG++  E+N LE++ LF + FDL VT  AF +YC  L+ EM
Sbjct: 127 DDICYNNAYFARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEM 168

BLAST of MS004870 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.9e-37
Identity = 80/171 (46.78%), Postives = 107/171 (62.57%), Query Frame = 0

Query: 22  RVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPGISILK 81
           +++  LS +LER+   ND      R +  +      +H           G+  P I+I  
Sbjct: 12  KLIAFLSSLLERVAESNDL----TRRVATQSQRVSVFH-----------GLSRPTITIQS 71

Query: 82  YLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKMLDDVHY 141
           YLERI+KY NCSPSC VV +VY+DR  HR P   + S NVHRLL+TSVMVA+K LDD++Y
Sbjct: 72  YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 131

Query: 142 NNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEMLL 193
           NNA+YA+VGG++  E+N LEL+ LF L F+L VT   F  Y  +L+KEM L
Sbjct: 132 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

BLAST of MS004870 vs. ExPASy Swiss-Prot
Match: Q75HV0 (Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-36
Identity = 83/199 (41.71%), Postives = 124/199 (62.31%), Query Frame = 0

Query: 21  PRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPGISIL 80
           P+VL++L+  L+R V +N+ L++                + I +S   F G R P +SI 
Sbjct: 36  PKVLLLLAAYLDRSVQKNEDLLDS---------------NKIKDSSTIFHGHRAPDLSIK 95

Query: 81  KYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKMLDDVH 140
            Y ERI+KY+ CSPSC V+  +Y++R L + PH  + SL+VHRLL+TSV+VA+K  DD  
Sbjct: 96  LYAERIFKYSECSPSCFVLALIYMERYL-QQPHVYMTSLSVHRLLITSVVVAAKFTDDAF 155

Query: 141 YNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEMLL----NGNG 200
           +NNAFYARVGG++  E+N+LEL+LLF LDF L V    F +YC  LEKE ++        
Sbjct: 156 FNNAFYARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETMVLVIDRPIQ 215

Query: 201 EMHRIQTPLPLLVSNSLDD 216
           ++H + +   L  ++S+D+
Sbjct: 216 QVHGVNSTKDLSRNSSIDE 218

BLAST of MS004870 vs. ExPASy TrEMBL
Match: A0A6J1CEW6 (cyclin-U1-1 OS=Momordica charantia OX=3673 GN=LOC111011059 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.1e-125
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0

Query: 1   MLSGSGSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHS 60
           MLSGSGSEL EGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHS
Sbjct: 1   MLSGSGSELVEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHS 60

Query: 61  HIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLN 120
           HIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLN
Sbjct: 61  HIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLN 120

Query: 121 VHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQ 180
           VHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQ
Sbjct: 121 VHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQ 180

Query: 181 TYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           TYCFHLEKEMLLNGNGEMHRIQ PLPLLVSNSLDDVSEISVDDSTLISSSPP
Sbjct: 181 TYCFHLEKEMLLNGNGEMHRIQMPLPLLVSNSLDDVSEISVDDSTLISSSPP 232

BLAST of MS004870 vs. ExPASy TrEMBL
Match: A0A6J1G7K4 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111451542 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.9e-89
Identity = 179/235 (76.17%), Postives = 203/235 (86.38%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGC 60
           ML+G+    + LAEGD+  AEPTPRVL+IL+ VL+RLVARND +++G+    +EES S C
Sbjct: 1   MLTGNDFPANGLAEGDN-VAEPTPRVLIILACVLDRLVARNDRIVDGITH-QIEES-SSC 60

Query: 61  YHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVA 120
             SHIGNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP+SLV 
Sbjct: 61  GTSHIGNSFNAFHGVRAPAISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPNSLVI 120

Query: 121 SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTAR 180
           SLN+HRLLVTSVMVASK+LDDVHYNNAFYARVGGV K ELNKLELELLFLLDF +TV++R
Sbjct: 121 SLNIHRLLVTSVMVASKILDDVHYNNAFYARVGGVNKVELNKLELELLFLLDFGVTVSSR 180

Query: 181 AFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           AF+TYC HLEKEMLLNGNGE+ RI+   PL+ +NSLDDVSEISVDD TL SSSPP
Sbjct: 181 AFETYCLHLEKEMLLNGNGELQRIER--PLMATNSLDDVSEISVDD-TLASSSPP 229

BLAST of MS004870 vs. ExPASy TrEMBL
Match: A0A6J1I5U7 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111469864 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.3e-88
Identity = 179/235 (76.17%), Postives = 202/235 (85.96%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGC 60
           ML+G+    + LAEGD+  AEPTPRVL+IL+ VL+RLVARND + +G+    +EES S C
Sbjct: 1   MLTGNDFPANGLAEGDN-VAEPTPRVLIILACVLDRLVARNDRIADGITH-QIEES-SSC 60

Query: 61  YHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVA 120
             SHIGNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP+SLV 
Sbjct: 61  GTSHIGNSFNAFHGVRAPAISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPNSLVI 120

Query: 121 SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTAR 180
           SLNVHRLLVTS+MVASK+LDDVHYNNAFYARVGGV K ELNKLELELLFLLDF +TV++R
Sbjct: 121 SLNVHRLLVTSIMVASKILDDVHYNNAFYARVGGVNKVELNKLELELLFLLDFGVTVSSR 180

Query: 181 AFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           AF+TYC HLEKEMLLNGNGE+ RI+   PL+ +NSLDDVSEISVDD TL SSSPP
Sbjct: 181 AFETYCLHLEKEMLLNGNGELQRIER--PLMATNSLDDVSEISVDD-TLASSSPP 229

BLAST of MS004870 vs. ExPASy TrEMBL
Match: A0A0A0LQH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G422050 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.9e-88
Identity = 176/236 (74.58%), Postives = 202/236 (85.59%), Query Frame = 0

Query: 1   MLSGS---GSELAEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESG-SG 60
           ML+GS        EGD+ AAEPTPRVL+IL+ VL+RLVARND L+N + +  LEE G   
Sbjct: 1   MLTGSDFAAPGRVEGDN-AAEPTPRVLIILAFVLDRLVARNDRLLNELSQ-QLEELGCCS 60

Query: 61  CYHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLV 120
              +H+GNSFNAF GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP SLV
Sbjct: 61  SSSNHLGNSFNAFHGVRAPTISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPDSLV 120

Query: 121 ASLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTA 180
            SLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGV+KGELNKLELE+LFLLDF +TV++
Sbjct: 121 ISLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVSKGELNKLELEMLFLLDFGVTVSS 180

Query: 181 RAFQTYCFHLEKEMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           R F+TYC+HLEKEMLLNGNGEM R++ PL ++ +N+LDDVSEISVDD+ L+SSSPP
Sbjct: 181 RVFETYCWHLEKEMLLNGNGEMQRVERPL-IMPTNTLDDVSEISVDDTLLVSSSPP 233

BLAST of MS004870 vs. ExPASy TrEMBL
Match: A0A5D3BEZ8 (Cyclin-U1-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00280 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.8e-88
Identity = 173/224 (77.23%), Postives = 197/224 (87.95%), Query Frame = 0

Query: 10  AEGDHAAAEPTPRVLMILSLVLERLVARNDALINGVRELPLEESG-SGCYHSHIGNSFNA 69
           AEGD+ AAEPTPRVL+IL+ VL+RLVARND L+N + +  LEE G      +H+GNSFNA
Sbjct: 13  AEGDN-AAEPTPRVLIILAFVLDRLVARNDRLLNELTQ-QLEELGCCSSSSNHLGNSFNA 72

Query: 70  FQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTS 129
           F GVR P ISILKYLERIYKYTNCSPSCLVVGFVYIDRL+HRHP SLV SLNVHRLLVTS
Sbjct: 73  FHGVRAPTISILKYLERIYKYTNCSPSCLVVGFVYIDRLIHRHPDSLVISLNVHRLLVTS 132

Query: 130 VMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEK 189
           VMVASKMLDDVHYNNAFYARVGGV+KGELNKLELE+LFLLDF +TV++RAF+TYC HLEK
Sbjct: 133 VMVASKMLDDVHYNNAFYARVGGVSKGELNKLELEMLFLLDFGVTVSSRAFETYCCHLEK 192

Query: 190 EMLLNGNGEMHRIQTPLPLLVSNSLDDVSEISVDDSTLISSSPP 233
           EMLLNGNGEM R++ PL ++ +N+LDDV EISVDD+ L+SSSPP
Sbjct: 193 EMLLNGNGEMQRVERPL-VMPTNTLDDVLEISVDDTLLVSSSPP 233

BLAST of MS004870 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-59
Identity = 119/197 (60.41%), Postives = 142/197 (72.08%), Query Frame = 0

Query: 1   MLSGSGSELAE---GDHAAAE-PTPRVLMILSLVLERLVARNDALINGVRELPLEESGSG 60
           ML+ +G +  +   G  +A E  TPRVL I+S V+E+LVARN+ L    +          
Sbjct: 1   MLTAAGDDELDPVVGPESATEAATPRVLTIISHVMEKLVARNEWLAKQTK---------- 60

Query: 61  CYHSHIGNSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLV 120
                 G S  AF GVR P ISI KYLERIYKYT CSP+C VVG+VYIDRL H+HP SLV
Sbjct: 61  ----GFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLV 120

Query: 121 ASLNVHRLLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTA 180
            SLNVHRLLVT VM+A+K+LDDVHYNN FYARVGGV+  +LNK+ELELLFLLDF +TV+ 
Sbjct: 121 VSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSF 180

Query: 181 RAFQTYCFHLEKEMLLN 194
           R F++YCFHLEKEM LN
Sbjct: 181 RVFESYCFHLEKEMQLN 183

BLAST of MS004870 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 155.2 bits (391), Expect = 6.3e-38
Identity = 80/171 (46.78%), Postives = 107/171 (62.57%), Query Frame = 0

Query: 22  RVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPGISILK 81
           +++  LS +LER+   ND      R +  +      +H           G+  P I+I  
Sbjct: 12  KLIAFLSSLLERVAESNDL----TRRVATQSQRVSVFH-----------GLSRPTITIQS 71

Query: 82  YLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKMLDDVHY 141
           YLERI+KY NCSPSC VV +VY+DR  HR P   + S NVHRLL+TSVMVA+K LDD++Y
Sbjct: 72  YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 131

Query: 142 NNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEMLL 193
           NNA+YA+VGG++  E+N LEL+ LF L F+L VT   F  Y  +L+KEM L
Sbjct: 132 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

BLAST of MS004870 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-36
Identity = 76/176 (43.18%), Postives = 109/176 (61.93%), Query Frame = 0

Query: 17  AEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPG 76
           AE  P V+  +S +L+R+   ND L    RE           H  I    +AF  V  P 
Sbjct: 17  AEIMPNVITAMSSLLQRVSETNDDLSRPFRE-----------HKRI----SAFNAVTKPS 76

Query: 77  ISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKML 136
           ISI  Y+ERI+KY +CS SC +V ++Y+DR + + P   + S NVHRL++TSV+V++K +
Sbjct: 77  ISIRSYMERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFM 136

Query: 137 DDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEMLL 193
           DD+ YNNAFYA+VGG+T  E+N LEL+ LF + F L VT   +  YC  L++EM++
Sbjct: 137 DDLCYNNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVM 177

BLAST of MS004870 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 )

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-36
Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 0

Query: 64  NSFNAFQGVRPPGISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHR 123
           +S   F G  PP ISI  YL+RI+KY+ CSPSC V+  +YID  LH+   +L+  LNVHR
Sbjct: 60  DSVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHK-TRALLKPLNVHR 119

Query: 124 LLVTSVMVASKMLDDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYC 183
           L++T+VM+A+K+ DD ++NNA+YARVGGVT  ELN+LE+ELLF LDF L V  + F T+C
Sbjct: 120 LIITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHC 179

Query: 184 FHLEKE 190
             LEK+
Sbjct: 180 CQLEKQ 184

BLAST of MS004870 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-35
Identity = 73/176 (41.48%), Postives = 109/176 (61.93%), Query Frame = 0

Query: 17  AEPTPRVLMILSLVLERLVARNDALINGVRELPLEESGSGCYHSHIGNSFNAFQGVRPPG 76
           AE  P VL  +S +L+R+   ND L    ++ P                 ++F GV  P 
Sbjct: 19  AEIMPSVLTAMSYLLQRVSETNDNL--SQKQKP-----------------SSFTGVTKPS 78

Query: 77  ISILKYLERIYKYTNCSPSCLVVGFVYIDRLLHRHPHSLVASLNVHRLLVTSVMVASKML 136
           ISI  YLERI++Y NCS SC +V ++Y+DR + + P   + S NVHRL++TSV+V++K +
Sbjct: 79  ISIRSYLERIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFM 138

Query: 137 DDVHYNNAFYARVGGVTKGELNKLELELLFLLDFDLTVTARAFQTYCFHLEKEMLL 193
           DD+ YNN +YA+VGG+++ E+N LEL+ LF + F+L VT   F  YC  L++EM +
Sbjct: 139 DDLSYNNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022140365.16.4e-12599.14cyclin-U1-1 [Momordica charantia][more]
KAG6604845.17.4e-8976.17Cyclin-U1-1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023534097.11.3e-8876.60cyclin-U1-1-like [Cucurbita pepo subsp. pepo][more]
XP_022947783.11.6e-8876.17cyclin-U1-1-like [Cucurbita moschata][more]
KAG7034959.11.6e-8876.17Cyclin-U1-1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q9LJ453.1e-5860.41Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1[more]
Q0J9W09.5e-3943.65Cyclin-P1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP1-1 PE=3 SV=2[more]
Q7XC351.6e-3847.70Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1[more]
O805138.9e-3746.78Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1[more]
Q75HV01.5e-3641.71Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1CEW63.1e-12599.14cyclin-U1-1 OS=Momordica charantia OX=3673 GN=LOC111011059 PE=3 SV=1[more]
A0A6J1G7K47.9e-8976.17Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111451542 PE=3 SV=1[more]
A0A6J1I5U72.3e-8876.17Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111469864 PE=3 SV=1[more]
A0A0A0LQH03.9e-8874.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G422050 PE=3 SV=1[more]
A0A5D3BEZ88.8e-8877.23Cyclin-U1-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00280 PE... [more]
Match NameE-valueIdentityDescription
AT3G21870.12.2e-5960.41cyclin p2;1 [more]
AT2G44740.16.3e-3846.78cyclin p4;1 [more]
AT5G07450.12.7e-3643.18cyclin p4;3 [more]
AT3G63120.15.9e-3655.56cyclin p1;1 [more]
AT5G61650.12.2e-3541.48CYCLIN P4;2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012389Cyclin P/UPIRSFPIRSF027110PREGcoord: 6..219
e-value: 4.6E-64
score: 214.0
NoneNo IPR availableGENE3D1.10.472.10coord: 12..206
e-value: 7.3E-53
score: 181.3
NoneNo IPR availablePANTHERPTHR15615:SF108PROTEIN CNPPD1coord: 11..200
NoneNo IPR availablePANTHERPTHR15615UNCHARACTERIZEDcoord: 11..200
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 25..172
e-value: 1.4E-35
score: 123.1
IPR013763Cyclin-likeCDDcd00043CYCLINcoord: 77..159
e-value: 0.00732223
score: 32.9809
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 79..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004870.1MS004870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function GO:0019901 protein kinase binding