MS004362 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGGCTCCGACGAGTCCAGCCGGCGGCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAATACCGGTGGGGTTCGGGAGCAGGACCGATACCTCCCGATCGCTAACATTAGCCGGATCATGAAGAAGGCCTTGCCCGCTAATGGCAAGATCGCCAAGGACGCCAAGGACACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCATCACTAGCGAGTGCGTCCGTCTTTGATCTCTCTTCTTTCGTATTTGGATCGTGAATTTTAGTGTCAATTCTGGTGTTAGTTTACGATTGGCGTTTCTGATACGGCAAAGGCAAATTTTTTTTTTATTGTGTATTGGATGTAATTGGTTTTGTGCGTGTGTAGGGCGAGCGATAAGTGCCAGAAGGAGAAGAGAAAGACCATTAATGGGGATGATTTGCTGTGGGCAATGGCGACATTGGGTTTCGAGGACTATATTGATCCGCTTAAGTCGTATCTAACTAGGTACAGAGAGGTAAGCTCGTTTCCCATTTTTAGCTCCTACGTGGCTTTACATTTAGAAGACTATGCACGCACGTTACTGATGCTGATAGGAGCTCTCCTCTCACGTTCTTTTACTTATTGTGATTGAGATTTGAGAGCACTTCAGTTGGTGATCAAGTGGTAAAGACTTTCCTCGGTTGATCAGTAGATGCCTAGTTCTGTTTCTTTTCAATAAGGCTATATGATTTATTTGATCTCATCACTATGATGTGCTCACATTCGTTTTCTTTTTTCCATTTTTTTTCACTTTTTTTGGTGGGGGCAATGGTGTTGCTTCAGTTGGAGGTAATTGAAACCAGCTCTTAAACCTAGTATTCTACTGGTTTATTGTACCCCCCCACCCCCCCTATACCCTAAGCTTCATTTGGGAGAAAATTATAGACTGAGACTTTTCGTTAATTATAAACTTTTACAGTGTGATGCTAAGGGATCTTCTAGGGGTGGTGATGAGTCTGCTAAAAGAGATGCAGTTGGGGCCTTGCCTGGCCAAAATTCCCAGGTTTAGTTACTTTCCATAGAATCTTGGTTTACAGAGAAATTCTATTTATTGTCATGGCCACAAGAATTGGAATTTTCTTTATATATTATGTAATCGTATCTTAAATTTTAGCATGAATATGTGCAGCAGTACATGCAGCCGGGAGCAATGACCTACATTAACACCCAAGTAATAATCTCTCTTCTC ATGGCGGAGGCTCCGACGAGTCCAGCCGGCGGCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAATACCGGTGGGGTTCGGGAGCAGGACCGATACCTCCCGATCGCTAACATTAGCCGGATCATGAAGAAGGCCTTGCCCGCTAATGGCAAGATCGCCAAGGACGCCAAGGACACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCATCACTAGCGAGGCGAGCGATAAGTGCCAGAAGGAGAAGAGAAAGACCATTAATGGGGATGATTTGCTGTGGGCAATGGCGACATTGGGTTTCGAGGACTATATTGATCCGCTTAAGTCGTATCTAACTAGGTACAGAGAGTGTGATGCTAAGGGATCTTCTAGGGGTGGTGATGAGTCTGCTAAAAGAGATGCAGTTGGGGCCTTGCCTGGCCAAAATTCCCAGCAGTACATGCAGCCGGGAGCAATGACCTACATTAACACCCAAGTAATAATCTCTCTTCTC ATGGCGGAGGCTCCGACGAGTCCAGCCGGCGGCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAATACCGGTGGGGTTCGGGAGCAGGACCGATACCTCCCGATCGCTAACATTAGCCGGATCATGAAGAAGGCCTTGCCCGCTAATGGCAAGATCGCCAAGGACGCCAAGGACACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCATCACTAGCGAGGCGAGCGATAAGTGCCAGAAGGAGAAGAGAAAGACCATTAATGGGGATGATTTGCTGTGGGCAATGGCGACATTGGGTTTCGAGGACTATATTGATCCGCTTAAGTCGTATCTAACTAGGTACAGAGAGTGTGATGCTAAGGGATCTTCTAGGGGTGGTGATGAGTCTGCTAAAAGAGATGCAGTTGGGGCCTTGCCTGGCCAAAATTCCCAGCAGTACATGCAGCCGGGAGCAATGACCTACATTAACACCCAAGTAATAATCTCTCTTCTC MAEAPTSPAGGSHESGGEQSPNTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGALPGQNSQQYMQPGAMTYINTQVIISLL Homology
BLAST of MS004362 vs. NCBI nr
Match: XP_022138911.1 (nuclear transcription factor Y subunit B-1-like isoform X3 [Momordica charantia]) HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of MS004362 vs. NCBI nr
Match: XP_022138908.1 (nuclear transcription factor Y subunit B-1-like isoform X1 [Momordica charantia] >XP_022138909.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Momordica charantia]) HSP 1 Score: 314.3 bits (804), Expect = 6.2e-82 Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0
BLAST of MS004362 vs. NCBI nr
Match: KAG6600098.1 (Nuclear transcription factor Y subunit B-8, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 312.0 bits (798), Expect = 3.1e-81 Identity = 154/165 (93.33%), Postives = 162/165 (98.18%), Query Frame = 0
BLAST of MS004362 vs. NCBI nr
Match: XP_022942119.1 (nuclear transcription factor Y subunit B-10-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 310.8 bits (795), Expect = 6.9e-81 Identity = 153/160 (95.62%), Postives = 159/160 (99.38%), Query Frame = 0
BLAST of MS004362 vs. NCBI nr
Match: XP_022986143.1 (nuclear transcription factor Y subunit B-1-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 310.8 bits (795), Expect = 6.9e-81 Identity = 153/160 (95.62%), Postives = 159/160 (99.38%), Query Frame = 0
BLAST of MS004362 vs. ExPASy Swiss-Prot
Match: Q67XJ2 (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 4.4e-54 Identity = 111/148 (75.00%), Postives = 123/148 (83.11%), Query Frame = 0
BLAST of MS004362 vs. ExPASy Swiss-Prot
Match: Q8VYK4 (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 1.7e-53 Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
BLAST of MS004362 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 9.1e-52 Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = 0
BLAST of MS004362 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2) HSP 1 Score: 202.2 bits (513), Expect = 4.5e-51 Identity = 108/144 (75.00%), Postives = 116/144 (80.56%), Query Frame = 0
BLAST of MS004362 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2) HSP 1 Score: 202.2 bits (513), Expect = 4.5e-51 Identity = 109/156 (69.87%), Postives = 124/156 (79.49%), Query Frame = 0
BLAST of MS004362 vs. ExPASy TrEMBL
Match: A0A6J1CB30 (nuclear transcription factor Y subunit B-1-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111009975 PE=3 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 9.3e-84 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of MS004362 vs. ExPASy TrEMBL
Match: A0A6J1CEF2 (nuclear transcription factor Y subunit B-1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009975 PE=3 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82 Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0
BLAST of MS004362 vs. ExPASy TrEMBL
Match: A0A6J1JFM8 (nuclear transcription factor Y subunit B-1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483965 PE=3 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 3.3e-81 Identity = 153/160 (95.62%), Postives = 159/160 (99.38%), Query Frame = 0
BLAST of MS004362 vs. ExPASy TrEMBL
Match: A0A6J1FQE1 (nuclear transcription factor Y subunit B-10-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111447288 PE=3 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 3.3e-81 Identity = 153/160 (95.62%), Postives = 159/160 (99.38%), Query Frame = 0
BLAST of MS004362 vs. ExPASy TrEMBL
Match: A0A6J1CAU0 (nuclear transcription factor Y subunit B-1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009975 PE=3 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80 Identity = 158/161 (98.14%), Postives = 158/161 (98.14%), Query Frame = 0
BLAST of MS004362 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 ) HSP 1 Score: 212.2 bits (539), Expect = 3.1e-55 Identity = 111/148 (75.00%), Postives = 123/148 (83.11%), Query Frame = 0
BLAST of MS004362 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 ) HSP 1 Score: 210.3 bits (534), Expect = 1.2e-54 Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
BLAST of MS004362 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 ) HSP 1 Score: 210.3 bits (534), Expect = 1.2e-54 Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
BLAST of MS004362 vs. TAIR 10
Match: AT2G37060.3 (nuclear factor Y, subunit B8 ) HSP 1 Score: 210.3 bits (534), Expect = 1.2e-54 Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
BLAST of MS004362 vs. TAIR 10
Match: AT2G38880.7 (nuclear factor Y, subunit B1 ) HSP 1 Score: 206.5 bits (524), Expect = 1.7e-53 Identity = 108/142 (76.06%), Postives = 116/142 (81.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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