MS004214 (gene) Bitter gourd (TR) v1

Overview
NameMS004214
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionthioredoxin-like 3-2, chloroplastic
Locationscaffold92: 874472 .. 876136 (+)
RNA-Seq ExpressionMS004214
SyntenyMS004214
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAGCTTTGCCCCTTCACCTCGGAACCGCGAAATCTTTTGCCAAATTCCACGCCCCCTTTGATCTTTCCACGCCTCCCCATCTTCCGGCCGGGAGGCTCGCCGGCTCCGGTTTCAACAGGCTTCCTTTGCCCACAAGGTTTCCTCCGCTTTCCCAGAAAGTTTCTGCCACTGGGGAGAAGACTTCGCTTCTCGGGGCTTGGACCCAGGAGAGTCCCTTGCAGTTTCGAGATGAATCCCCTGTGTCCATCGAGCTCAAGTCCATTTCTAGCGAACTTGAATTTGACCAGGCAATTTTAGATGCAGCGGAACGCGATGAGCTCGTGATTCTTGTATGGTATGTACGCGTTTTCTGGGAATTTTTTTTGTGTTGATCGTGGAAATTTCTTCCCCAGCGTTTAAATTGGTATTTCTTTTTGGAAGATCTAGAGGATGTGAATGTATTTGTTTTTGGCTGGATCTTATTTGATCAGAAGTTTACTTGGCCAGATTTTCCCTGGGGTTTCATTGAAACAGAATAACTTCCGTTGCACATTGATTGTGATAATTTTGAAGTGAATGATGCTTTATTTTCTCCAGTTTTCCTTACCAGTATTTTAAAGTACAATTCTCTTTATCTTCTTTTGTTGAAAAATGAGTCTGTGTGGATCTGTAGGATGGCTGACTGGTGCAGAAATTATATTTATTTAAAACCCCAATTGGAAAGATTGGCTGCAGATTATTACCCCAGGTTAGCTCTTTAGCCCATTCCTTCTGACCAAGTAAATGGTTAAAATTTGTACCATATTATCATTCTCCAACTGCTGGTGGATAATTCTAAAAAGACCAGTGTGCCAGTACTTACTGAAGTTGTGTACGTGCTTGATAAATTGTAGATTGCAATTCTACTGCATTGATGTCAATACGGTGCCACACAAGCTAGTTGTTCGTGCCGGGTTAGCTGTAAGTCCCTTTCCAAGCTTTTGATACTTATAATGATCTTCATAGGAAAATTGTTCTTCTGTAAGGAAATGATTTTCTTTGGATATTGTAACTATGAACTATCCCTTTGTATTGTACTTCTCTGAAATGTTGGGGTCTGGGAATTATAACAACCTGGTAGTTTCAGGTTTGGCTAAGTCCACCTTTAGATTTTGGCAATTAAATTTTCTGTTGTCATGGGGACTCCAGATTTCTGTTGACAGTAGAAGTTGGACTTCGGTTTCATTACCATTAGGAACATTTCCAATATGCATTTTGAACATCCTGGACAGAGGGCATGTTGAGCTTGTATTAGTTTTATGGATGAGTTGATTGAATAAGCTGCATAATCTGTTTTCTCTCTCATTTTAATGTGTGCAAACTTAAAATCTTTCCATCCTGGGTTAACTGCTACAAGTCCTCATAGTGTTATTTTTGTACATTTTCTCATGTATCTCAACCTTTTGTCGTTTCAATCTACCAGAAGATGCCAGCTATACAGGTGAGTTCCTTCACGATTACGTCTTACAATTGGAAATCTTCCTCTCTACTACTAATCACTAATGTTCTGAAGATCTTGATGACATTTGTTACAGCTATGGAAGGATGGTAAGAAGCAAGATGAGGTGATTGGTCTCTACAAAGCATATTTAGTCGCCAACGATGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAG

mRNA sequence

ATGGTGAAAGCTTTGCCCCTTCACCTCGGAACCGCGAAATCTTTTGCCAAATTCCACGCCCCCTTTGATCTTTCCACGCCTCCCCATCTTCCGGCCGGGAGGCTCGCCGGCTCCGGTTTCAACAGGCTTCCTTTGCCCACAAGGTTTCCTCCGCTTTCCCAGAAAGTTTCTGCCACTGGGGAGAAGACTTCGCTTCTCGGGGCTTGGACCCAGGAGAGTCCCTTGCAGTTTCGAGATGAATCCCCTGTGTCCATCGAGCTCAAGTCCATTTCTAGCGAACTTGAATTTGACCAGGCAATTTTAGATGCAGCGGAACGCGATGAGCTCGTGATTCTTGTATGGATGGCTGACTGGTGCAGAAATTATATTTATTTAAAACCCCAATTGGAAAGATTGGCTGCAGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATACGGTGCCACACAAGCTAGTTGTTCGTGCCGGGTTAGCTCTATGGAAGGATGGTAAGAAGCAAGATGAGGTGATTGGTCTCTACAAAGCATATTTAGTCGCCAACGATGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAG

Coding sequence (CDS)

ATGGTGAAAGCTTTGCCCCTTCACCTCGGAACCGCGAAATCTTTTGCCAAATTCCACGCCCCCTTTGATCTTTCCACGCCTCCCCATCTTCCGGCCGGGAGGCTCGCCGGCTCCGGTTTCAACAGGCTTCCTTTGCCCACAAGGTTTCCTCCGCTTTCCCAGAAAGTTTCTGCCACTGGGGAGAAGACTTCGCTTCTCGGGGCTTGGACCCAGGAGAGTCCCTTGCAGTTTCGAGATGAATCCCCTGTGTCCATCGAGCTCAAGTCCATTTCTAGCGAACTTGAATTTGACCAGGCAATTTTAGATGCAGCGGAACGCGATGAGCTCGTGATTCTTGTATGGATGGCTGACTGGTGCAGAAATTATATTTATTTAAAACCCCAATTGGAAAGATTGGCTGCAGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATACGGTGCCACACAAGCTAGTTGTTCGTGCCGGGTTAGCTCTATGGAAGGATGGTAAGAAGCAAGATGAGGTGATTGGTCTCTACAAAGCATATTTAGTCGCCAACGATGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAG

Protein sequence

MVKALPLHLGTAKSFAKFHAPFDLSTPPHLPAGRLAGSGFNRLPLPTRFPPLSQKVSATGEKTSLLGAWTQESPLQFRDESPVSIELKSISSELEFDQAILDAAERDELVILVWMADWCRNYIYLKPQLERLAADYYPRLQFYCIDVNTVPHKLVVRAGLALWKDGKKQDEVIGLYKAYLVANDVQKMIERELTGE
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138917.15.2e-10496.04thioredoxin-like 3-2, chloroplastic [Momordica charantia] >XP_022138918.1 thiore... [more]
XP_038891539.11.8e-8884.65thioredoxin-like 3-2, chloroplastic isoform X2 [Benincasa hispida][more]
XP_038891538.12.4e-8884.24thioredoxin-like 3-2, chloroplastic isoform X1 [Benincasa hispida][more]
XP_008446853.12.2e-8682.09PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo][more]
XP_008446852.12.9e-8681.68PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo] >TYK092... [more]
Match NameE-valueIdentityDescription
Q8VZT63.7e-3646.20Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE... [more]
Q9FG362.2e-2040.52Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE... [more]
Q6Z7L34.1e-1941.59Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
Match NameE-valueIdentityDescription
A0A6J1CBF62.5e-10496.04thioredoxin-like 3-2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110099... [more]
A0A1S3BGW01.1e-8682.09thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5D3CG321.4e-8681.68Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475... [more]
A0A1S3BGQ41.4e-8681.68thioredoxin-like 3-2, chloroplastic isoform X8 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0KUX74.1e-8681.68Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622670... [more]
Match NameE-valueIdentityDescription
AT5G04260.12.6e-3746.20WCRKC thioredoxin 2 [more]
AT5G06690.11.6e-2140.52WCRKC thioredoxin 1 [more]
AT5G06690.22.8e-1543.21WCRKC thioredoxin 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 93..177
e-value: 3.2E-5
score: 23.8
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 78..188
e-value: 6.3E-9
score: 37.5
NoneNo IPR availablePANTHERPTHR47192:SF4THIOREDOXIN-LIKE 3-2, CHLOROPLASTICcoord: 49..193
NoneNo IPR availableCDDcd02947TRX_familycoord: 95..190
e-value: 1.60678E-10
score: 53.7161
IPR044253Thioredoxin-like 3-1/3-2PANTHERPTHR47192THIOREDOXIN-LIKE 3-2, CHLOROPLASTICcoord: 49..193
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 87..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004214.1MS004214.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma