MS004206 (gene) Bitter gourd (TR) v1

Overview
NameMS004206
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVacuolar acid trehalase
Locationscaffold92: 823521 .. 826637 (+)
RNA-Seq ExpressionMS004206
SyntenyMS004206
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCCCATGGCTTCGCCTCTTTCCTTCTCTCCGTGTCGCCTTCTCAACTCTCGCGCGCTTGCAATTGCAAGCACTCACTTCCACGCCATTAATGGCGCGCCTTCCCATATTTCAGCGCCATCCGTTTCTTCTGTTACCAATCCCCTCAAGTTTAAGCTCAAACAACATCTCAGAGCGTCTTCTGAAGGTATGTTTCTCTCCCTTCTCACACTCTTCCACTTCGTAATCATGGGAATTTTAATTTAGATATACGTTTCGAGTTGTTTGAGACGCTGCCCATTAGAAAGCGTTTTACGATTTTGAATCGGGATTTCTGAGAAATCTTCAGCTATTTCATTCGCGTTTTTCCTGATTACAAAAGGCTTAGAATCTCTACAAATCTGGAAATAATTTGCAAGGGCGGTGGCTTGTATATAGCACAGTATCACTGTTTTTTTTCATACGGCATAACTTGTTTCACTCCTACAGGAGCCCCTAATGAGTTAGTCGAAGATTCTAAGTTTGTTCCCTTGAATGCTGATGATCCCAGATATGGTCCACCTGTAAGTTCTGGTTAGTTTCAGCGCAATTGTTGACGTGGTTTATCTCTCGTTGCTTCTTTTCGGTGGATTTTCATTTTGATTGTTGTATATGTTTTCACTTTACTTATTGTCTGAGAATTGGGTTTTAATTTAAATTGAGCTCCTGTATTTTATGTTTATTGTACTATTAAGTTGAAGGCTCTTGGATGTGTACGTACCATATGTATTAGTTGTCGTCATCACCTTCATAATTTTCATTTTGGATTCTGTTTGTCTCATAGGATAAGTGTTATTTTATGATTTCCCTTGGGTTTTTCATCCTGTAATGTATGAAATTATGTCTTTCAATGCTTCCTTTCCGTTTCTTTATGTAATTAGAATAGGGGAAAGCAGGTTGATATTTAGACTGTTCATTATTGCAGGCATTGCTGTTACTGGGCTTTGAATTGGAGGAAGCCATGAAGGTACGGTGTTGATTTTTTTCCTTCTTTCCGCGCTTCAACATCTGAAAACTAAAATAAAGTAAAAATCATACTGCTAAGTGAAAGTAGAAACCAAACTCCTGGTGGAGTATAGTTCTTTTACTGTTTCAGTGGATAATCTGCCGGTTATAGTTAAGGAGGTGATTCTGCAAACTGTTTGGTTTTGCTTTCTAGTTCTTCAAGTATTTTCCGAAGGAAGAGAGCAAAGGAATGCACTTCCTTTCTGATATTTATTAGTGGACCACGCTTCGAATGTCTACTGTGCTACAATTTACAAATGCTTGCAAATGCTATTGTCAAAAATTTATTGAGGAATGCTTTCATTATTAGCTAACTACGCTTGCAGTATGGTATTTCAGTCCTCTAATGCACTTATTTCTCACGAATTTTTTTGGTACTTGGAGATTTTTTCTAGATTTTGTGTTGTTTATCCTACAGATCGTGACAACACCTTCTGGTTAGTTCTTTTAGAGGTCGAATTTAATTGTATGGAGGGTTGAGGTTTATTATTTATAGTCACTGCTTTTTTCTTTGCCTGAACCTTCATAATATATTCTTATAAAGAAACACTAAGCAACTTCATTCAAAGTTCTGCTATTCAGTCACTACGACACTATATAACCAAAACAGCCAAGCGGGCACCTAAAAACTCCTTGTCTCCTCGCTTATCCTTTAGCTTTGAAATGCCAGTTTCGAAAACTACTACCCTGTTTGATTTTTTGCTTTACATTTGATTACAGATTCAAGAGCTTTTGAAAGATTTGGGCGGTGAATTCATGCAGGTAGTTCATTTCCCCTCGTGTCCAATTACTTTTAGGTAAGATGAAAGGCGGTTGTTATTAAGAATAGTAGAATAAAATATGAAAATGTTGTTCAATGCATTGAAGCACTAATTGTGGAAAATTAACCCTCTAATCATCAATCCAAATCTCTTGTGAAAAGTTAAAACTCGCTTGATATTATGCTAAATGTAACCAAGTGCATTACTGATAAGTGATTATTCAAAGAGATTTTTACTAGTGCAAACTCATGGTTTAATCTGTTTTTCACAATCTTTCGGTTCAAATTACTATTTATGTATATTTAACATTTTCCCCCATATCATGCATTATCTTCTGATCCTATAGTTTGGGAAACTTTTCTTTGGCAACCTCCTTTCTGAACTTCAAACCAAAAAATTTGGTCGATCTCATCTAGTTCCCTGATATTTTTTTGTCTAATCGAATACATGTAAGTAAAAAAATTCCCATCACGGTAGCAAGTCTCTGTGAAGTAGTTCTGGCATGCTACGTGTGTTGTCTTACACATTGCATAAATTTATTAATCATCTCTAACAACAGATTGCACAAAACTACCAACATCAATAATCTGTCGAACAGTTTTTTTAGTGTAGGTTATTCTTTGTACTGAAGACATGATTGCCAGATCCCTGTGGGAAGCAGTGCATACAAGCCAGCCAGTTTTGGCAAACGTGAAGGTCAAGTTCTGAACTTCCTGAATTTTTACATTTTTAGTTTAGTATGTGCTTGCTATATTGTTCTCATAAAGAATCTAACTTTTGAAGCATGAAAACAGATCAAATCAATGAGTTAGCAGATCTTGATTATTCTCACATAACATTCTTTGTTAATGTGATACTGTAATGTCACTAACACCATGTATATTGTTTCTGCAGATAGCAAGATCATTGCCACGAATCTGCTTCTTATCCGGTCTTAGCGGAGAGGAAATGATGATGTTCATCGACACTTTTCCAGAAACTGGTATTGAAAAGATTACCCTCTTCTTTTTCATTTTAAGGAGAAGTTGGGACTTGGGATCTTTTAAAATCCAAAAGTACATTTGATCATTTGCATATTCCTTTACTCTCTTTCTCCATATTGTCATTCTCAAAACAGCACGGGTCTGTTATAGTATGATCACCACTAGCACCATGACCAGAGAAGCAGAGCAAAACTCTCTCTCTCTCTCTCTCTCAGTCTTGATTTTCTTATGGTGCAGGACTTGAACCAGCTGTATTTGCTGCTCTTGTTCCCAACGGTGCCAATAAACCAGTAGAGGAGTTAATAGCAGAGATTACGGGGGACCATGAAATGATGGTAAGGGAGAATTCC

mRNA sequence

GCTCCCATGGCTTCGCCTCTTTCCTTCTCTCCGTGTCGCCTTCTCAACTCTCGCGCGCTTGCAATTGCAAGCACTCACTTCCACGCCATTAATGGCGCGCCTTCCCATATTTCAGCGCCATCCGTTTCTTCTGTTACCAATCCCCTCAAGTTTAAGCTCAAACAACATCTCAGAGCGTCTTCTGAAGGAGCCCCTAATGAGTTAGTCGAAGATTCTAAGTTTGTTCCCTTGAATGCTGATGATCCCAGATATGGTCCACCTGCATTGCTGTTACTGGGCTTTGAATTGGAGGAAGCCATGAAGATTCAAGAGCTTTTGAAAGATTTGGGCGGTGAATTCATGCAGGTAGTTATTCTTTGTACTGAAGACATGATTGCCAGATCCCTGTGGGAAGCAGTGCATACAAGCCAGCCAGTTTTGGCAAACGTGAAGATAGCAAGATCATTGCCACGAATCTGCTTCTTATCCGGTCTTAGCGGAGAGGAAATGATGATGTTCATCGACACTTTTCCAGAAACTGGACTTGAACCAGCTGTATTTGCTGCTCTTGTTCCCAACGGTGCCAATAAACCAGTAGAGGAGTTAATAGCAGAGATTACGGGGGACCATGAAATGATGGTAAGGGAGAATTCC

Coding sequence (CDS)

GCTCCCATGGCTTCGCCTCTTTCCTTCTCTCCGTGTCGCCTTCTCAACTCTCGCGCGCTTGCAATTGCAAGCACTCACTTCCACGCCATTAATGGCGCGCCTTCCCATATTTCAGCGCCATCCGTTTCTTCTGTTACCAATCCCCTCAAGTTTAAGCTCAAACAACATCTCAGAGCGTCTTCTGAAGGAGCCCCTAATGAGTTAGTCGAAGATTCTAAGTTTGTTCCCTTGAATGCTGATGATCCCAGATATGGTCCACCTGCATTGCTGTTACTGGGCTTTGAATTGGAGGAAGCCATGAAGATTCAAGAGCTTTTGAAAGATTTGGGCGGTGAATTCATGCAGGTAGTTATTCTTTGTACTGAAGACATGATTGCCAGATCCCTGTGGGAAGCAGTGCATACAAGCCAGCCAGTTTTGGCAAACGTGAAGATAGCAAGATCATTGCCACGAATCTGCTTCTTATCCGGTCTTAGCGGAGAGGAAATGATGATGTTCATCGACACTTTTCCAGAAACTGGACTTGAACCAGCTGTATTTGCTGCTCTTGTTCCCAACGGTGCCAATAAACCAGTAGAGGAGTTAATAGCAGAGATTACGGGGGACCATGAAATGATGGTAAGGGAGAATTCC

Protein sequence

APMASPLSFSPCRLLNSRALAIASTHFHAINGAPSHISAPSVSSVTNPLKFKLKQHLRASSEGAPNELVEDSKFVPLNADDPRYGPPALLLLGFELEEAMKIQELLKDLGGEFMQVVILCTEDMIARSLWEAVHTSQPVLANVKIARSLPRICFLSGLSGEEMMMFIDTFPETGLEPAVFAALVPNGANKPVEELIAEITGDHEMMVRENS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138904.11.9e-9993.30uncharacterized protein LOC111009971 [Momordica charantia][more]
XP_038891527.12.5e-8382.84uncharacterized protein LOC120080918 isoform X2 [Benincasa hispida][more]
XP_038891526.12.3e-8180.48uncharacterized protein LOC120080918 isoform X1 [Benincasa hispida][more]
XP_022956817.11.5e-8078.95uncharacterized protein LOC111458403 [Cucurbita moschata] >KAG7031981.1 hypothet... [more]
XP_023535741.15.7e-8078.95uncharacterized protein LOC111797077 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CBE29.1e-10093.30uncharacterized protein LOC111009971 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1GXF17.2e-8178.95uncharacterized protein LOC111458403 OS=Cucurbita moschata OX=3662 GN=LOC1114584... [more]
A0A6J1JNY63.6e-8077.99uncharacterized protein LOC111487032 OS=Cucurbita maxima OX=3661 GN=LOC111487032... [more]
A0A0A0KRH82.3e-7977.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622600 PE=4 SV=1[more]
A0A5A7SZ692.2e-7777.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT3G10405.12.1e-5665.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen d... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016621Uncharacterised conserved protein UCP014543PFAMPF12646DUF3783coord: 151..206
e-value: 2.2E-14
score: 53.2
NoneNo IPR availablePANTHERPTHR35732OS10G0545100 PROTEINcoord: 3..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004206.1MS004206.1mRNA