MS003582 (gene) Bitter gourd (TR) v1

Overview


Name	MS003582
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L18-like
Location	scaffold234: 3712301 .. 3712507 (+)
RNA-Seq Expression	MS003582
Synteny	MS003582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATGGCTTTCACAGCAGTATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCGTTCAGTTCTCTCTTCCCAGTGGCTATCAGATCCCACCACTCCATCACGGAAACCCTCGTCTCTCTCGTGGGTATCTTCATTTCCGAATATTAGCATATCTACAGGCTCGTCTTCCATCTCTTCGAATCCCGCGCATGCAAAGGTACAATTTCTT

mRNA sequence

ACGATGGCTTTCACAGCAGTATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCGTTCAGTTCTCTCTTCCCAGTGGCTATCAGATCCCACCACTCCATCACGGAAACCCTCGTCTCTCTCGTGGGTATCTTCATTTCCGAATATTAGCATATCTACAGGCTCGTCTTCCATCTCTTCGAATCCCGCGCATGCAAAGGTACAATTTCTT

Coding sequence (CDS)

ACGATGGCTTTCACAGCAGTATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCGTTCAGTTCTCTCTTCCCAGTGGCTATCAGATCCCACCACTCCATCACGGAAACCCTCGTCTCTCTCGTGGGTATCTTCATTTCCGAATATTAGCATATCTACAGGCTCGTCTTCCATCTCTTCGAATCCCGCGCATGCAAAGGTACAATTTCTT

Protein sequence

TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNPAHAKVQFL

Homology

[Close]

BLAST of MS003582 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.0e-25
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 60
          TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN
Sbjct: 6  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 65

Query: 61 PAHAKVQFL 70
          PAHAKV F+
Sbjct: 66 PAHAKVLFI 74

[Close]

BLAST of MS003582 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS +SVRS+LSSQ +S PTTPS+K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 68

[Close]

BLAST of MS003582 vs. NCBI nr
Match: XP_022963861.1 (uncharacterized protein LOC111464045 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS + VRS+LSSQ +S PTTPS+K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 68

[Close]

BLAST of MS003582 vs. NCBI nr
Match: XP_022990182.1 (uncharacterized protein LOC111487153 [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS +SVRS+LSSQ +S PTTP +K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTP-QKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 67

[Close]

BLAST of MS003582 vs. NCBI nr
Match: XP_022993255.1 (uncharacterized protein LOC111489327 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAF A+SSSLPSCSSV SVLS QW S PT  S+K SSLSW SSFP+++IS GS  +SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAKVQFL 70
          AH KV F+
Sbjct: 61 AHDKVLFI 68

[Close]

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-25
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 60
          TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN
Sbjct: 6  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 65

Query: 61 PAHAKVQFL 70
          PAHAKV F+
Sbjct: 66 PAHAKVLFI 74

[Close]

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.6e-15
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS + VRS+LSSQ +S PTTPS+K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 68

[Close]

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.3e-14
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS +SVRS+LSSQ +S PTTP +K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTP-QKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 67

[Close]

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAF A+SSSLPSCSSV SVLS QW S PT  S+K SSLSW SSFP+++IS GS  +SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAKVQFL 70
          AH KV F+
Sbjct: 61 AHDKVLFI 68

[Close]

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1FFK7 (uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC111445279 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 2  MAFTAVSSSL--PSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISS 61
          MAFTA+SSSL   S SSV SV+S Q  S P   S+K SSLSW SSFP+++IS GS  +SS
Sbjct: 1  MAFTAISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

Query: 62 NPAHAKVQFL 70
          NPAH KV F+
Sbjct: 61 NPAHDKVLFI 70

The following BLAST results are available for this feature:

BLAST of MS003582 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152485.1	5.0e-25	97.10	uncharacterized protein LOC111020202 [Momordica charantia]	[more]
XP_023521951.1	2.7e-15	72.06	uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]	[more]
XP_022963861.1	1.4e-14	70.59	uncharacterized protein LOC111464045 [Cucurbita moschata]	[more]
XP_022990182.1	1.5e-13	70.59	uncharacterized protein LOC111487153 [Cucurbita maxima]	[more]
XP_022993255.1	4.4e-13	69.12	uncharacterized protein LOC111489327 [Cucurbita maxima]	[more]

BLAST of MS003582 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE20	2.4e-25	97.10	uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1HH86	6.6e-15	70.59	uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1JHY7	7.3e-14	70.59	uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153...	[more]
A0A6J1JY30	2.1e-13	69.12	uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327...	[more]
A0A6J1FFK7	2.7e-08	61.43	uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]

BLAST of MS003582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003582.1	MS003582.1	mRNA