MS003582 (gene) Bitter gourd (TR) v1

Overview
NameMS003582
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L18-like
Locationscaffold234: 3712301 .. 3712507 (+)
RNA-Seq ExpressionMS003582
SyntenyMS003582
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGATGGCTTTCACAGCAGTATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCGTTCAGTTCTCTCTTCCCAGTGGCTATCAGATCCCACCACTCCATCACGGAAACCCTCGTCTCTCTCGTGGGTATCTTCATTTCCGAATATTAGCATATCTACAGGCTCGTCTTCCATCTCTTCGAATCCCGCGCATGCAAAGGTACAATTTCTT

mRNA sequence

ACGATGGCTTTCACAGCAGTATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCGTTCAGTTCTCTCTTCCCAGTGGCTATCAGATCCCACCACTCCATCACGGAAACCCTCGTCTCTCTCGTGGGTATCTTCATTTCCGAATATTAGCATATCTACAGGCTCGTCTTCCATCTCTTCGAATCCCGCGCATGCAAAGGTACAATTTCTT

Coding sequence (CDS)

ACGATGGCTTTCACAGCAGTATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCGTTCAGTTCTCTCTTCCCAGTGGCTATCAGATCCCACCACTCCATCACGGAAACCCTCGTCTCTCTCGTGGGTATCTTCATTTCCGAATATTAGCATATCTACAGGCTCGTCTTCCATCTCTTCGAATCCCGCGCATGCAAAGGTACAATTTCTT

Protein sequence

TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNPAHAKVQFL
Homology
BLAST of MS003582 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.0e-25
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 1  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 60
          TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN
Sbjct: 6  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 65

Query: 61 PAHAKVQFL 70
          PAHAKV F+
Sbjct: 66 PAHAKVLFI 74

BLAST of MS003582 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS +SVRS+LSSQ +S PTTPS+K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 68

BLAST of MS003582 vs. NCBI nr
Match: XP_022963861.1 (uncharacterized protein LOC111464045 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS + VRS+LSSQ +S PTTPS+K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 68

BLAST of MS003582 vs. NCBI nr
Match: XP_022990182.1 (uncharacterized protein LOC111487153 [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS +SVRS+LSSQ +S PTTP +K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTP-QKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 67

BLAST of MS003582 vs. NCBI nr
Match: XP_022993255.1 (uncharacterized protein LOC111489327 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAF A+SSSLPSCSSV SVLS QW S PT  S+K SSLSW SSFP+++IS GS  +SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAKVQFL 70
          AH KV F+
Sbjct: 61 AHDKVLFI 68

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-25
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0

Query: 1  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 60
          TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN
Sbjct: 6  TMAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSN 65

Query: 61 PAHAKVQFL 70
          PAHAKV F+
Sbjct: 66 PAHAKVLFI 74

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.6e-15
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS + VRS+LSSQ +S PTTPS+K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 68

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.3e-14
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAFTA+SSS+PS +SVRS+LSSQ +S PTTP +K SSLSW SSFP+IS+S GS  +SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTP-QKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKVQFL 70
          AHAKV F+
Sbjct: 61 AHAKVLFI 67

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 2  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 61
          MAF A+SSSLPSCSSV SVLS QW S PT  S+K SSLSW SSFP+++IS GS  +SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAKVQFL 70
          AH KV F+
Sbjct: 61 AHDKVLFI 68

BLAST of MS003582 vs. ExPASy TrEMBL
Match: A0A6J1FFK7 (uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC111445279 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 2  MAFTAVSSSL--PSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISS 61
          MAFTA+SSSL   S SSV SV+S Q  S P   S+K SSLSW SSFP+++IS GS  +SS
Sbjct: 1  MAFTAISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

Query: 62 NPAHAKVQFL 70
          NPAH KV F+
Sbjct: 61 NPAHDKVLFI 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152485.15.0e-2597.10uncharacterized protein LOC111020202 [Momordica charantia][more]
XP_023521951.12.7e-1572.06uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo][more]
XP_022963861.11.4e-1470.59uncharacterized protein LOC111464045 [Cucurbita moschata][more]
XP_022990182.11.5e-1370.59uncharacterized protein LOC111487153 [Cucurbita maxima][more]
XP_022993255.14.4e-1369.12uncharacterized protein LOC111489327 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DE202.4e-2597.10uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1HH866.6e-1570.59uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640... [more]
A0A6J1JHY77.3e-1470.59uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153... [more]
A0A6J1JY302.1e-1369.12uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327... [more]
A0A6J1FFK72.7e-0861.43uncharacterized protein LOC111445279 OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003582.1MS003582.1mRNA