Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGAGAGATGAAGAAGAAGATGGGAGTTGTTGCCGGCGGGCCGCCGGAGTGGGACCAGCTGAGGAGGGTGCCGTCTGGGCCTGACCCATTGCACCACAACGGTGGAACCCCTAAAAAGCCAAGAACTCCA
mRNA sequence
ATGCTTAGAGAGATGAAGAAGAAGATGGGAGTTGTTGCCGGCGGGCCGCCGGAGTGGGACCAGCTGAGGAGGGTGCCGTCTGGGCCTGACCCATTGCACCACAACGGTGGAACCCCTAAAAAGCCAAGAACTCCA
Coding sequence (CDS)
ATGCTTAGAGAGATGAAGAAGAAGATGGGAGTTGTTGCCGGCGGGCCGCCGGAGTGGGACCAGCTGAGGAGGGTGCCGTCTGGGCCTGACCCATTGCACCACAACGGTGGAACCCCTAAAAAGCCAAGAACTCCA
Protein sequence
MLREMKKKMGVVAGGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP
Homology
BLAST of MS002865 vs. NCBI nr
Match:
KAG6583691.1 (hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 70.1 bits (170), Expect = 5.6e-09
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0
Query: 1 MLREMKKKMGVVAG----GPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
MLREM K++ V G EWDQLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 48 MLREMVKELEVDGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96
BLAST of MS002865 vs. NCBI nr
Match:
XP_038877536.1 (protein CLAVATA 3 [Benincasa hispida])
HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 1 MLREMKKKMGVVAGGPP------EWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
ML+EMKK+M G EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 60 MLQEMKKEMEEGVDGDKRWWPAGEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110
BLAST of MS002865 vs. NCBI nr
Match:
KAE8652825.1 (hypothetical protein Csa_022700, partial [Cucumis sativus])
HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 1 MLREMKKKM------GVVAGGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
ML EMKK+M G G EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 59 MLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109
BLAST of MS002865 vs. NCBI nr
Match:
KAA0054350.1 (protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucumis melo var. makuwa])
HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0
Query: 1 MLREMKKKMGVVAGG------PPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
M+ EMKK+M G EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 5 MIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55
BLAST of MS002865 vs. NCBI nr
Match:
KAG5566490.1 (hypothetical protein RHGRI_002148 [Rhododendron griersonianum])
HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query: 10 GVVAGGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
G G WDQLR VP+GPDPLHH+GG+PKKPRTP
Sbjct: 60 GYGGAGSETWDQLRGVPAGPDPLHHHGGSPKKPRTP 95
BLAST of MS002865 vs. ExPASy TrEMBL
Match:
A0A5A7UGG1 (Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001690 PE=4 SV=1)
HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0
Query: 1 MLREMKKKMGVVAGG------PPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
M+ EMKK+M G EW+QLRRVPSGPDPLHHNGG+PKKPRTP
Sbjct: 5 MIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55
BLAST of MS002865 vs. ExPASy TrEMBL
Match:
A0A6P3ZEB5 (protein CLAVATA 3 OS=Ziziphus jujuba OX=326968 GN=LOC107410225 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0
Query: 19 WD-QLRRVPSGPDPLHHNGGTPKKPRTP 46
WD QLR+VPSGPDPLHHNG +PKKPRTP
Sbjct: 60 WDYQLRKVPSGPDPLHHNGNSPKKPRTP 87
BLAST of MS002865 vs. ExPASy TrEMBL
Match:
A0A1U8Q0C1 (uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0
Query: 14 GGPPEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
G WD LRRVPSGPDPLHHNGG+PKKP+TP
Sbjct: 70 GNLVSWD-LRRVPSGPDPLHHNGGSPKKPQTP 100
BLAST of MS002865 vs. ExPASy TrEMBL
Match:
A0A6I9U546 (protein CLAVATA 3 OS=Sesamum indicum OX=4182 GN=LOC105170063 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0
Query: 7 KKMGVVAGGP-------PEWDQLRRVPSGPDPLHHNGGTPKKPRTP 46
K+MG+ G P PE +LRRVP+GPDPLHHNG PKKPRTP
Sbjct: 47 KQMGLKNGAPKLGNEEMPEDWELRRVPAGPDPLHHNGQDPKKPRTP 92
BLAST of MS002865 vs. ExPASy TrEMBL
Match:
A0A072UL07 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_4g051618 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0
Query: 19 WDQLRRVPSGPDPLHHNGGTPKKPRTP 46
WDQLR++PSGPDPLHHNGGTP KP TP
Sbjct: 50 WDQLRKIPSGPDPLHHNGGTP-KPETP 75
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6583691.1 | 5.6e-09 | 71.43 | hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_038877536.1 | 1.6e-08 | 66.67 | protein CLAVATA 3 [Benincasa hispida] | [more] |
| KAE8652825.1 | 2.1e-08 | 68.63 | hypothetical protein Csa_022700, partial [Cucumis sativus] | [more] |
| KAA0054350.1 | 2.3e-07 | 64.71 | protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucu... | [more] |
| KAG5566490.1 | 1.3e-05 | 69.44 | hypothetical protein RHGRI_002148 [Rhododendron griersonianum] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UGG1 | 1.1e-07 | 64.71 | Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00... | [more] |
| A0A6P3ZEB5 | 1.2e-04 | 85.71 | protein CLAVATA 3 OS=Ziziphus jujuba OX=326968 GN=LOC107410225 PE=4 SV=1 | [more] |
| A0A1U8Q0C1 | 1.2e-04 | 78.13 | uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329... | [more] |
| A0A6I9U546 | 1.2e-04 | 60.87 | protein CLAVATA 3 OS=Sesamum indicum OX=4182 GN=LOC105170063 PE=4 SV=1 | [more] |
| A0A072UL07 | 1.5e-04 | 85.19 | Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_4g051618 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
