MS002518 (gene) Bitter gourd (TR) v1

Overview
NameMS002518
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionXyloglucan galactosyltransferase KATAMARI1-like protein
Locationscaffold318: 768946 .. 769290 (+)
RNA-Seq ExpressionMS002518
SyntenyMS002518
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGGCGGTGGGGCGTTCGAGCGGGCAAGGTCGGGAGGTATAAACGACAGAGGAGCTTCAATGTCAGTGAGGCATGGATGTGCAGAAGGCAAATTGCACAACTGTTGCTGCATAAACATTTATGTAAACAGCAACATTCAGGGAGTGAGCAACTCAATATTGAAGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGGTTCTTCTTTGATCAAAATCCACATCAAAATCCCAACCAATGGCAATGGTTATGGCTGTTGGTTGGTGCTGTGTTGCTGCTCATACTCATTGTTGTTGTGCTGTTGGCGACACCTAAGTTGGGAATGTTTCATTCT

mRNA sequence

ATGGAAGCAGGCGGTGGGGCGTTCGAGCGGGCAAGGTCGGGAGGTATAAACGACAGAGGAGCTTCAATGTCAGTGAGGCATGGATGTGCAGAAGGCAAATTGCACAACTGTTGCTGCATAAACATTTATGTAAACAGCAACATTCAGGGAGTGAGCAACTCAATATTGAAGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGGTTCTTCTTTGATCAAAATCCACATCAAAATCCCAACCAATGGCAATGGTTATGGCTGTTGGTTGGTGCTGTGTTGCTGCTCATACTCATTGTTGTTGTGCTGTTGGCGACACCTAAGTTGGGAATGTTTCATTCT

Coding sequence (CDS)

ATGGAAGCAGGCGGTGGGGCGTTCGAGCGGGCAAGGTCGGGAGGTATAAACGACAGAGGAGCTTCAATGTCAGTGAGGCATGGATGTGCAGAAGGCAAATTGCACAACTGTTGCTGCATAAACATTTATGTAAACAGCAACATTCAGGGAGTGAGCAACTCAATATTGAAGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGGTTCTTCTTTGATCAAAATCCACATCAAAATCCCAACCAATGGCAATGGTTATGGCTGTTGGTTGGTGCTGTGTTGCTGCTCATACTCATTGTTGTTGTGCTGTTGGCGACACCTAAGTTGGGAATGTTTCATTCT

Protein sequence

MEAGGGAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQNPHQNPNQWQWLWLLVGAVLLLILIVVVLLATPKLGMFHS
Homology
BLAST of MS002518 vs. NCBI nr
Match: KGN46369.1 (hypothetical protein Csa_004893 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 8.3e-17
Identity = 68/121 (56.20%), Postives = 77/121 (63.64%), Query Frame = 0

Query: 7   AFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGS 66
           A E  R  G N  GASMSV HG  E KL NCCCINIYVNSNIQGV+NS L NG EVKMGS
Sbjct: 9   ALEGVRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-NGGEVKMGS 68

Query: 67  PGVWFFF-DQNP----------HQNPNQWQW-LWLLVGAVLLLILIVVVLLATPKLGMFH 116
           PGV+F F D  P          HQNP  WQW L +L+   LLL L+ ++LL   ++ M H
Sbjct: 69  PGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLL---EIKMLH 123

BLAST of MS002518 vs. NCBI nr
Match: KAA0039894.1 (xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa] >TYK24608.1 xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12
Identity = 53/75 (70.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 1  MEAGG--GAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKN 60
          MEA G   A ER R  G N  GASMSV HG  E KL NCCCINIYVNSNIQGV+NS L N
Sbjct: 1  MEARGEDEAPERLRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-N 60

Query: 61 GSEVKMGSPGVWFFF 74
          G EVKMGSPGV+F F
Sbjct: 61 GGEVKMGSPGVFFLF 72

BLAST of MS002518 vs. NCBI nr
Match: KAG6592845.1 (hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 2  EAGGGAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSE 61
          E G GAFER R GG N  GASMSV HG +EGKL NCCCINIYVNSNIQGV+NS L NGSE
Sbjct: 6  EDGVGAFERVRLGGRN-IGASMSVSHG-SEGKLPNCCCINIYVNSNIQGVNNSTL-NGSE 63

Query: 62 V 63
          +
Sbjct: 66 I 63

BLAST of MS002518 vs. NCBI nr
Match: XP_030470661.1 (uncharacterized protein LOC115688861 [Syzygium oleosum])

HSP 1 Score: 74.3 bits (181), Expect = 7.5e-10
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 20  GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
           GA+M VR GCA G+  + CCINIY+NSN+QGVSNSIL  GSEV+MG PGV  +F      
Sbjct: 21  GAAMFVRRGCA-GESKDSCCINIYINSNVQGVSNSILV-GSEVRMGDPGVSLYFGDIKLA 80

Query: 80  NPHQNPNQWQ---WLW--------LLVGAVLLLILIVVV 104
           N H+   ++Q   W +        LLV A+LLL+L++++
Sbjct: 81  NGHKKRRRYQRIKWRFGLGSFVVSLLVFALLLLLLLLIL 117

BLAST of MS002518 vs. NCBI nr
Match: KAG5072492.1 (hypothetical protein JHK86_007703 [Glycine max] >KRH67467.1 hypothetical protein GLYMA_03G167700v4 [Glycine max] >RZC21056.1 hypothetical protein D0Y65_007390 [Glycine soja])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 20  GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
           GA+M VRH   +G+  +CCCINIYVN+N+QGVSNS+L +GSEV+M  PGV  +F+     
Sbjct: 21  GATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKVD 80

Query: 80  --NPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
                 N   + W      WL +  +L L+ ++V+L +T
Sbjct: 81  KGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVLLFST 118

BLAST of MS002518 vs. ExPASy TrEMBL
Match: A0A0A0KBZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 68/121 (56.20%), Postives = 77/121 (63.64%), Query Frame = 0

Query: 7   AFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGS 66
           A E  R  G N  GASMSV HG  E KL NCCCINIYVNSNIQGV+NS L NG EVKMGS
Sbjct: 9   ALEGVRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-NGGEVKMGS 68

Query: 67  PGVWFFF-DQNP----------HQNPNQWQW-LWLLVGAVLLLILIVVVLLATPKLGMFH 116
           PGV+F F D  P          HQNP  WQW L +L+   LLL L+ ++LL   ++ M H
Sbjct: 69  PGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLL---EIKMLH 123

BLAST of MS002518 vs. ExPASy TrEMBL
Match: A0A5A7T8V9 (Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001550 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 53/75 (70.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 1  MEAGG--GAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKN 60
          MEA G   A ER R  G N  GASMSV HG  E KL NCCCINIYVNSNIQGV+NS L N
Sbjct: 1  MEARGEDEAPERLRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-N 60

Query: 61 GSEVKMGSPGVWFFF 74
          G EVKMGSPGV+F F
Sbjct: 61 GGEVKMGSPGVFFLF 72

BLAST of MS002518 vs. ExPASy TrEMBL
Match: K7KFJ6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G167700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 20  GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
           GA+M VRH   +G+  +CCCINIYVN+N+QGVSNS+L +GSEV+M  PGV  +F+     
Sbjct: 21  GATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKVD 80

Query: 80  --NPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
                 N   + W      WL +  +L L+ ++V+L +T
Sbjct: 81  KGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVLLFST 118

BLAST of MS002518 vs. ExPASy TrEMBL
Match: A0A445LCK5 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007390 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 20  GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
           GA+M VRH   +G+  +CCCINIYVN+N+QGVSNS+L +GSEV+M  PGV  +F+     
Sbjct: 21  GATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKVD 80

Query: 80  --NPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
                 N   + W      WL +  +L L+ ++V+L +T
Sbjct: 81  KGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVLLFST 118

BLAST of MS002518 vs. ExPASy TrEMBL
Match: V7CWU8 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G165400g PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 20  GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFF-----FD 79
           GA+M + H   +G   +CCCINIYVN+N+QGVSNS+L +GSEV+M  PGV  +     FD
Sbjct: 21  GATMHIHHRSTKGDPKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKFD 80

Query: 80  QNPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
           +    + N + W      WL +  +L L+ ++V+L +T
Sbjct: 81  RGTPTSSNNFFWRNRFGFWLCMVHLLALMFLLVLLFST 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN46369.18.3e-1756.20hypothetical protein Csa_004893 [Cucumis sativus][more]
KAA0039894.12.8e-1270.67xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuw... [more]
KAG6592845.15.2e-1175.41hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_030470661.17.5e-1048.48uncharacterized protein LOC115688861 [Syzygium oleosum][more]
KAG5072492.11.3e-0942.42hypothetical protein JHK86_007703 [Glycine max] >KRH67467.1 hypothetical protein... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBZ54.0e-1756.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1[more]
A0A5A7T8V91.3e-1270.67Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. mak... [more]
K7KFJ66.2e-1042.42Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G167700 PE=4 SV=1[more]
A0A445LCK56.2e-1042.42Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007390 PE=4 SV=1[more]
V7CWU82.4e-0941.84Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G165400g PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33472OS01G0106600 PROTEINcoord: 7..79
NoneNo IPR availablePANTHERPTHR33472:SF9OXIDOREDUCTASES, ACTING ON NADH OR NADPH-RELATEDcoord: 7..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002518.1MS002518.1mRNA