Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGGCGGTGGGGCGTTCGAGCGGGCAAGGTCGGGAGGTATAAACGACAGAGGAGCTTCAATGTCAGTGAGGCATGGATGTGCAGAAGGCAAATTGCACAACTGTTGCTGCATAAACATTTATGTAAACAGCAACATTCAGGGAGTGAGCAACTCAATATTGAAGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGGTTCTTCTTTGATCAAAATCCACATCAAAATCCCAACCAATGGCAATGGTTATGGCTGTTGGTTGGTGCTGTGTTGCTGCTCATACTCATTGTTGTTGTGCTGTTGGCGACACCTAAGTTGGGAATGTTTCATTCT
mRNA sequence
ATGGAAGCAGGCGGTGGGGCGTTCGAGCGGGCAAGGTCGGGAGGTATAAACGACAGAGGAGCTTCAATGTCAGTGAGGCATGGATGTGCAGAAGGCAAATTGCACAACTGTTGCTGCATAAACATTTATGTAAACAGCAACATTCAGGGAGTGAGCAACTCAATATTGAAGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGGTTCTTCTTTGATCAAAATCCACATCAAAATCCCAACCAATGGCAATGGTTATGGCTGTTGGTTGGTGCTGTGTTGCTGCTCATACTCATTGTTGTTGTGCTGTTGGCGACACCTAAGTTGGGAATGTTTCATTCT
Coding sequence (CDS)
ATGGAAGCAGGCGGTGGGGCGTTCGAGCGGGCAAGGTCGGGAGGTATAAACGACAGAGGAGCTTCAATGTCAGTGAGGCATGGATGTGCAGAAGGCAAATTGCACAACTGTTGCTGCATAAACATTTATGTAAACAGCAACATTCAGGGAGTGAGCAACTCAATATTGAAGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGGTTCTTCTTTGATCAAAATCCACATCAAAATCCCAACCAATGGCAATGGTTATGGCTGTTGGTTGGTGCTGTGTTGCTGCTCATACTCATTGTTGTTGTGCTGTTGGCGACACCTAAGTTGGGAATGTTTCATTCT
Protein sequence
MEAGGGAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQNPHQNPNQWQWLWLLVGAVLLLILIVVVLLATPKLGMFHS
Homology
BLAST of MS002518 vs. NCBI nr
Match:
KGN46369.1 (hypothetical protein Csa_004893 [Cucumis sativus])
HSP 1 Score: 97.4 bits (241), Expect = 8.3e-17
Identity = 68/121 (56.20%), Postives = 77/121 (63.64%), Query Frame = 0
Query: 7 AFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGS 66
A E R G N GASMSV HG E KL NCCCINIYVNSNIQGV+NS L NG EVKMGS
Sbjct: 9 ALEGVRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-NGGEVKMGS 68
Query: 67 PGVWFFF-DQNP----------HQNPNQWQW-LWLLVGAVLLLILIVVVLLATPKLGMFH 116
PGV+F F D P HQNP WQW L +L+ LLL L+ ++LL ++ M H
Sbjct: 69 PGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLL---EIKMLH 123
BLAST of MS002518 vs. NCBI nr
Match:
KAA0039894.1 (xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa] >TYK24608.1 xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12
Identity = 53/75 (70.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query: 1 MEAGG--GAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKN 60
MEA G A ER R G N GASMSV HG E KL NCCCINIYVNSNIQGV+NS L N
Sbjct: 1 MEARGEDEAPERLRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-N 60
Query: 61 GSEVKMGSPGVWFFF 74
G EVKMGSPGV+F F
Sbjct: 61 GGEVKMGSPGVFFLF 72
BLAST of MS002518 vs. NCBI nr
Match:
KAG6592845.1 (hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 2 EAGGGAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSE 61
E G GAFER R GG N GASMSV HG +EGKL NCCCINIYVNSNIQGV+NS L NGSE
Sbjct: 6 EDGVGAFERVRLGGRN-IGASMSVSHG-SEGKLPNCCCINIYVNSNIQGVNNSTL-NGSE 63
Query: 62 V 63
+
Sbjct: 66 I 63
BLAST of MS002518 vs. NCBI nr
Match:
XP_030470661.1 (uncharacterized protein LOC115688861 [Syzygium oleosum])
HSP 1 Score: 74.3 bits (181), Expect = 7.5e-10
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0
Query: 20 GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
GA+M VR GCA G+ + CCINIY+NSN+QGVSNSIL GSEV+MG PGV +F
Sbjct: 21 GAAMFVRRGCA-GESKDSCCINIYINSNVQGVSNSILV-GSEVRMGDPGVSLYFGDIKLA 80
Query: 80 NPHQNPNQWQ---WLW--------LLVGAVLLLILIVVV 104
N H+ ++Q W + LLV A+LLL+L++++
Sbjct: 81 NGHKKRRRYQRIKWRFGLGSFVVSLLVFALLLLLLLLIL 117
BLAST of MS002518 vs. NCBI nr
Match:
KAG5072492.1 (hypothetical protein JHK86_007703 [Glycine max] >KRH67467.1 hypothetical protein GLYMA_03G167700v4 [Glycine max] >RZC21056.1 hypothetical protein D0Y65_007390 [Glycine soja])
HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 20 GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
GA+M VRH +G+ +CCCINIYVN+N+QGVSNS+L +GSEV+M PGV +F+
Sbjct: 21 GATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKVD 80
Query: 80 --NPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
N + W WL + +L L+ ++V+L +T
Sbjct: 81 KGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVLLFST 118
BLAST of MS002518 vs. ExPASy TrEMBL
Match:
A0A0A0KBZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 68/121 (56.20%), Postives = 77/121 (63.64%), Query Frame = 0
Query: 7 AFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGS 66
A E R G N GASMSV HG E KL NCCCINIYVNSNIQGV+NS L NG EVKMGS
Sbjct: 9 ALEGVRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-NGGEVKMGS 68
Query: 67 PGVWFFF-DQNP----------HQNPNQWQW-LWLLVGAVLLLILIVVVLLATPKLGMFH 116
PGV+F F D P HQNP WQW L +L+ LLL L+ ++LL ++ M H
Sbjct: 69 PGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLL---EIKMLH 123
BLAST of MS002518 vs. ExPASy TrEMBL
Match:
A0A5A7T8V9 (Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001550 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 53/75 (70.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query: 1 MEAGG--GAFERARSGGINDRGASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKN 60
MEA G A ER R G N GASMSV HG E KL NCCCINIYVNSNIQGV+NS L N
Sbjct: 1 MEARGEDEAPERLRLEGGN-MGASMSVSHG-GECKLPNCCCINIYVNSNIQGVNNSTL-N 60
Query: 61 GSEVKMGSPGVWFFF 74
G EVKMGSPGV+F F
Sbjct: 61 GGEVKMGSPGVFFLF 72
BLAST of MS002518 vs. ExPASy TrEMBL
Match:
K7KFJ6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G167700 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 20 GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
GA+M VRH +G+ +CCCINIYVN+N+QGVSNS+L +GSEV+M PGV +F+
Sbjct: 21 GATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKVD 80
Query: 80 --NPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
N + W WL + +L L+ ++V+L +T
Sbjct: 81 KGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVLLFST 118
BLAST of MS002518 vs. ExPASy TrEMBL
Match:
A0A445LCK5 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007390 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 20 GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFFFDQ---- 79
GA+M VRH +G+ +CCCINIYVN+N+QGVSNS+L +GSEV+M PGV +F+
Sbjct: 21 GATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKVD 80
Query: 80 --NPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
N + W WL + +L L+ ++V+L +T
Sbjct: 81 KGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVLLFST 118
BLAST of MS002518 vs. ExPASy TrEMBL
Match:
V7CWU8 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G165400g PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 20 GASMSVRHGCAEGKLHNCCCINIYVNSNIQGVSNSILKNGSEVKMGSPGVWFF-----FD 79
GA+M + H +G +CCCINIYVN+N+QGVSNS+L +GSEV+M PGV + FD
Sbjct: 21 GATMHIHHRSTKGDPKDCCCINIYVNNNVQGVSNSVL-HGSEVRMRDPGVSLYFENLKFD 80
Query: 80 QNPHQNPNQWQW-----LWLLVGAVLLLILIVVVLLAT 108
+ + N + W WL + +L L+ ++V+L +T
Sbjct: 81 RGTPTSSNNFFWRNRFGFWLCMVHLLALMFLLVLLFST 117
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN46369.1 | 8.3e-17 | 56.20 | hypothetical protein Csa_004893 [Cucumis sativus] | [more] |
KAA0039894.1 | 2.8e-12 | 70.67 | xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuw... | [more] |
KAG6592845.1 | 5.2e-11 | 75.41 | hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_030470661.1 | 7.5e-10 | 48.48 | uncharacterized protein LOC115688861 [Syzygium oleosum] | [more] |
KAG5072492.1 | 1.3e-09 | 42.42 | hypothetical protein JHK86_007703 [Glycine max] >KRH67467.1 hypothetical protein... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KBZ5 | 4.0e-17 | 56.20 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1 | [more] |
A0A5A7T8V9 | 1.3e-12 | 70.67 | Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. mak... | [more] |
K7KFJ6 | 6.2e-10 | 42.42 | Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G167700 PE=4 SV=1 | [more] |
A0A445LCK5 | 6.2e-10 | 42.42 | Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007390 PE=4 SV=1 | [more] |
V7CWU8 | 2.4e-09 | 41.84 | Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G165400g PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |