Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGCGGCGGCGGAGGCGCCCTTGATGCTGAGGGCGGCCACGTCGTGTGCGCGGGCCGCCATTTCAGGGGTCGGGAAAGTGCCGAGCCAAATGCGCGATTTCTTGCGTGGCTCGCGGATTTCGGACACCCATTTCCCCCAA
mRNA sequence
AGGGCGGCGGCGGAGGCGCCCTTGATGCTGAGGGCGGCCACGTCGTGTGCGCGGGCCGCCATTTCAGGGGTCGGGAAAGTGCCGAGCCAAATGCGCGATTTCTTGCGTGGCTCGCGGATTTCGGACACCCATTTCCCCCAA
Coding sequence (CDS)
AGGGCGGCGGCGGAGGCGCCCTTGATGCTGAGGGCGGCCACGTCGTGTGCGCGGGCCGCCATTTCAGGGGTCGGGAAAGTGCCGAGCCAAATGCGCGATTTCTTGCGTGGCTCGCGGATTTCGGACACCCATTTCCCCCAA
Protein sequence
RAAAEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ
Homology
BLAST of MS001212 vs. NCBI nr
Match:
PPD82210.1 (hypothetical protein GOBAR_DD20833 [Gossypium barbadense])
HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
AE PL+L+AATSCARAAISGVGKVPSQMRDFLRGSRISDTH PQ
Sbjct: 50 AELPLILKAATSCARAAISGVGKVPSQMRDFLRGSRISDTHLPQ 93
BLAST of MS001212 vs. NCBI nr
Match:
KYP54164.1 (hypothetical protein KK1_000338 [Cajanus cajan])
HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
AE PLM+RAATS ARAAISGV KVPSQMRDFLRGSRISDTHFPQ
Sbjct: 23 AEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFPQ 66
BLAST of MS001212 vs. NCBI nr
Match:
PUZ48314.1 (hypothetical protein GQ55_7G236000 [Panicum hallii var. hallii])
HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
A PLM AATSCARAAIS VGKVPSQMRDFLRGSRISDTH PQ
Sbjct: 158 AARPLMASAATSCARAAISAVGKVPSQMRDFLRGSRISDTHLPQ 201
BLAST of MS001212 vs. NCBI nr
Match:
CAA2626730.1 (unnamed protein product [Spirodela intermedia])
HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 9 MLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
ML AATSCARAAISGVGKVPSQ+RDFLRGSRIS+THFPQ
Sbjct: 1 MLSAATSCARAAISGVGKVPSQIRDFLRGSRISETHFPQ 39
BLAST of MS001212 vs. NCBI nr
Match:
EYU29278.1 (hypothetical protein MIMGU_mgv1a014180mg [Erythranthe guttata])
HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
AEAPLML AATS ARAAISGVGKVPS +RDFLRGSRIS+TH PQ
Sbjct: 80 AEAPLMLSAATSWARAAISGVGKVPSHIRDFLRGSRISETHLPQ 123
BLAST of MS001212 vs. ExPASy TrEMBL
Match:
A0A7C9DWE3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFP 47
AE+PLML AATSCARAAISG+GKVPSQMRDF RGSRISDTHFP
Sbjct: 54 AESPLMLNAATSCARAAISGLGKVPSQMRDFFRGSRISDTHFP 96
BLAST of MS001212 vs. ExPASy TrEMBL
Match:
A0A151SH45 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000338 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
AE PLM+RAATS ARAAISGV KVPSQMRDFLRGSRISDTHFPQ
Sbjct: 23 AEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFPQ 66
BLAST of MS001212 vs. ExPASy TrEMBL
Match:
A0A2T7CYD0 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G236000 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 8.7e-11
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
A PLM AATSCARAAIS VGKVPSQMRDFLRGSRISDTH PQ
Sbjct: 158 AARPLMASAATSCARAAISAVGKVPSQMRDFLRGSRISDTHLPQ 201
BLAST of MS001212 vs. ExPASy TrEMBL
Match:
A0A022QPP6 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a014180mg PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0
Query: 4 AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
AEAPLML AATS ARAAISGVGKVPS +RDFLRGSRIS+TH PQ
Sbjct: 80 AEAPLMLSAATSWARAAISGVGKVPSHIRDFLRGSRISETHLPQ 123
BLAST of MS001212 vs. ExPASy TrEMBL
Match:
A0A7I8J702 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09012417 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 9 MLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
ML AATSCARAAISGVGKVPSQ+RDFLRGSRIS+THFPQ
Sbjct: 1 MLSAATSCARAAISGVGKVPSQIRDFLRGSRISETHFPQ 39
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| PPD82210.1 | 2.5e-12 | 90.91 | hypothetical protein GOBAR_DD20833 [Gossypium barbadense] | [more] |
| KYP54164.1 | 2.8e-11 | 90.91 | hypothetical protein KK1_000338 [Cajanus cajan] | [more] |
| PUZ48314.1 | 1.8e-10 | 86.36 | hypothetical protein GQ55_7G236000 [Panicum hallii var. hallii] | [more] |
| CAA2626730.1 | 3.1e-10 | 92.31 | unnamed protein product [Spirodela intermedia] | [more] |
| EYU29278.1 | 3.1e-10 | 86.36 | hypothetical protein MIMGU_mgv1a014180mg [Erythranthe guttata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A7C9DWE3 | 2.1e-12 | 90.70 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
| A0A151SH45 | 1.3e-11 | 90.91 | Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000338 PE=4 SV=1 | [more] |
| A0A2T7CYD0 | 8.7e-11 | 86.36 | Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G23600... | [more] |
| A0A022QPP6 | 1.5e-10 | 86.36 | Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a014180mg PE... | [more] |
| A0A7I8J702 | 1.5e-10 | 92.31 | Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09012417 PE=4 SV... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
