MS001111 (gene) Bitter gourd (TR) v1

Overview
NameMS001111
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 1512627 .. 1513156 (-)
RNA-Seq ExpressionMS001111
SyntenyMS001111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATTTACAGCGGCGAAGGCCTTGGATTTCCACCTCTTCCTGATCTTCCTCGTCAGGTTCCTTGGTAACTCCAATCTAATATATGTTTCATATAACATAACGAATGTCTATTATAAGTCTCTTATATTTTAACATTGGATTTTGCAGGCCCTTGTGGATGCTTGGGATGCTAATATCCGCAATTTTACCGTTTTGGGGTAATAAATTGTGGCCTTTTCTGATATTAAAGCGTAAGTTTCTCTTCTTCATTTTCTGCAAAATTATTATAAAAAGAGAGAAAAAAAGGTTCCGATTCGGCCGATACATGATATGATGGATAGAGAACGTAGACAAAGTGGTGGATGCGGTGGAGGAAGTGGCAGAAATGGTGGAGACGGCGGCGGAGGGAGTGGAGAAGGTGGCGGAAGAGGTCGCCGAACATCTCCCACAAGGCGGCCAACTCCAGAAAGCTGCACTTTTCGTGGAAAATGCAGCCAAAACCCTTTCCAAGGACGCCCATGTTGCAGAACAAATCGTCCACAAGGTC

mRNA sequence

ATGGCCATTTACAGCGGCGAAGGCCTTGGATTTCCACCTCTTCCTGATCTTCCTCGTCAGGTTCCTTGGCCCTTGTGGATGCTTGGGATGCTAATATCCGCAATTTTACCGTTTTGGGGTAATAAATTGTGGCCTTTTCTGATATTAAAGCAGAACGTAGACAAAGTGGTGGATGCGGTGGAGGAAGTGGCAGAAATGGTGGAGACGGCGGCGGAGGGAGTGGAGAAGGTGGCGGAAGAGGTCGCCGAACATCTCCCACAAGGCGGCCAACTCCAGAAAGCTGCACTTTTCGTGGAAAATGCAGCCAAAACCCTTTCCAAGGACGCCCATGTTGCAGAACAAATCGTCCACAAGGTC

Coding sequence (CDS)

ATGGCCATTTACAGCGGCGAAGGCCTTGGATTTCCACCTCTTCCTGATCTTCCTCGTCAGGTTCCTTGGCCCTTGTGGATGCTTGGGATGCTAATATCCGCAATTTTACCGTTTTGGGGTAATAAATTGTGGCCTTTTCTGATATTAAAGCAGAACGTAGACAAAGTGGTGGATGCGGTGGAGGAAGTGGCAGAAATGGTGGAGACGGCGGCGGAGGGAGTGGAGAAGGTGGCGGAAGAGGTCGCCGAACATCTCCCACAAGGCGGCCAACTCCAGAAAGCTGCACTTTTCGTGGAAAATGCAGCCAAAACCCTTTCCAAGGACGCCCATGTTGCAGAACAAATCGTCCACAAGGTC

Protein sequence

MAIYSGEGLGFPPLPDLPRQVPWPLWMLGMLISAILPFWGNKLWPFLILKQNVDKVVDAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVHKV
Homology
BLAST of MS001111 vs. NCBI nr
Match: XP_022132223.1 (uncharacterized protein LOC111005138 [Momordica charantia])

HSP 1 Score: 225.3 bits (573), Expect = 2.7e-55
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0

Query: 1   MAIYSGEGLGFPPLPDLPRQVPWPLWMLGMLISAILPFWGNKLWPFLILKQNVDKVVDAV 60
           MAIYSGEGLGFP LPDLPRQVPWPLWMLGMLISAILPF GNKLWPFLIL QNVDKVVDAV
Sbjct: 56  MAIYSGEGLGFPSLPDLPRQVPWPLWMLGMLISAILPFGGNKLWPFLILNQNVDKVVDAV 115

Query: 61  EEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVHKV 120
           EEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALF+ENAAKTLSKDAHVAEQIVHK+
Sbjct: 116 EEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFLENAAKTLSKDAHVAEQIVHKI 174

BLAST of MS001111 vs. NCBI nr
Match: XP_038886507.1 (uncharacterized protein LOC120076681 isoform X3 [Benincasa hispida] >XP_038886572.1 uncharacterized protein LOC120076742 isoform X2 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-32
Identity = 80/122 (65.57%), Postives = 96/122 (78.69%), Query Frame = 0

Query: 1   MAIY-SGEGLGFPPLPDLPRQVPWPLWMLGMLISAILPFWGNKLW--PFLILKQNVDKVV 60
           MAIY SG+  G PPLP LP   PWPLW+ G+L+SA+L  W  K +  PFL LK+ VDKVV
Sbjct: 55  MAIYSSGDANGLPPLPPLP-DTPWPLWVAGVLMSAVLSIWQTKSYWGPFLTLKEKVDKVV 114

Query: 61  DAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVH 120
           D VEEVAEMVETAAE V+KVAEE+AEHLP+G +LQKAALFVENAA+ ++KDA +A  I+ 
Sbjct: 115 DVVEEVAEMVETAAERVDKVAEEIAEHLPEGSKLQKAALFVENAAERIAKDADLAGDIID 174

BLAST of MS001111 vs. NCBI nr
Match: XP_038886505.1 (uncharacterized protein LOC120076681 isoform X1 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0

Query: 1   MAIY-SGEGLGFPPLPDLPRQVPWPLWMLGMLISAILPFWGNKLW--PFLILKQNVDKVV 60
           MAIY SG+  G PPLP LP   PWPLW+ G+L+SA+L  W  K +  PFL LK+ VDKVV
Sbjct: 55  MAIYSSGDANGLPPLPPLP-DTPWPLWVAGVLMSAVLSIWQTKSYWGPFLTLKEKVDKVV 114

Query: 61  DAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVH 120
           D VEEVAEMVETAAE V+KVAEE+AEHLP+G +LQKAALFVENAA+ ++KDA +A  I+ 
Sbjct: 115 DVVEEVAEMVETAAERVDKVAEEIAEHLPEGSKLQKAALFVENAAERIAKDADLAGDIID 174

BLAST of MS001111 vs. NCBI nr
Match: XP_038886506.1 (uncharacterized protein LOC120076681 isoform X2 [Benincasa hispida] >XP_038886571.1 uncharacterized protein LOC120076742 isoform X1 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-31
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0

Query: 1   MAIY-SGEGLGFPPLPDLPRQVPWPLWMLGMLISAILPFWGNKLW--PFLILKQNVDKVV 60
           MAIY SG+  G PPLP LP   PWPLW+ G+L+SA+L  W  K +  PFL LK+ VDKVV
Sbjct: 55  MAIYSSGDANGLPPLPPLP-DTPWPLWVAGVLMSAVLSIWQTKSYWGPFLTLKEKVDKVV 114

Query: 61  DAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVH 119
           D VEEVAEMVETAAE V+KVAEE+AEHLP+G +LQKAALFVENAA+ ++KDA +A  I+ 
Sbjct: 115 DVVEEVAEMVETAAERVDKVAEEIAEHLPEGSKLQKAALFVENAAERIAKDADLAGDIID 174

BLAST of MS001111 vs. NCBI nr
Match: XP_023546969.1 (uncharacterized protein LOC111805911 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-25
Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = 0

Query: 1   MAIYS-GEGLG--FPPLPDLPRQVPWPLWMLGMLISAILPFW-GNKLW-PFLILKQNVDK 60
           MA+Y  G GLG   PP P  P   PWPLW+ G ++SAIL  W   K W PFL+LKQ V+K
Sbjct: 58  MAVYGVGGGLGSPLPPPPPPPPLTPWPLWVAGAVLSAILSIWKTTKYWAPFLMLKQRVEK 117

Query: 61  VVDAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQI 120
           VV   E+V +MVETAAE V+KVAEE+A+HLP+   LQK A+ VENAA+T++KDA++A +I
Sbjct: 118 VVHVAEDVVDMVETAAEEVDKVAEEIADHLPKDSILQKTAVLVENAAETVAKDANLAAEI 177

BLAST of MS001111 vs. ExPASy TrEMBL
Match: A0A6J1BVN6 (uncharacterized protein LOC111005138 OS=Momordica charantia OX=3673 GN=LOC111005138 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0

Query: 1   MAIYSGEGLGFPPLPDLPRQVPWPLWMLGMLISAILPFWGNKLWPFLILKQNVDKVVDAV 60
           MAIYSGEGLGFP LPDLPRQVPWPLWMLGMLISAILPF GNKLWPFLIL QNVDKVVDAV
Sbjct: 56  MAIYSGEGLGFPSLPDLPRQVPWPLWMLGMLISAILPFGGNKLWPFLILNQNVDKVVDAV 115

Query: 61  EEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVHKV 120
           EEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALF+ENAAKTLSKDAHVAEQIVHK+
Sbjct: 116 EEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFLENAAKTLSKDAHVAEQIVHKI 174

BLAST of MS001111 vs. ExPASy TrEMBL
Match: A0A6A6LE81 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_002908 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 12  PPLPDLPRQVPWPLWMLGMLISAILPFWGNKLWPFLILKQNVDKVVDAVEEVAEMVETAA 71
           P LP  P    W +W+LGM+I+ I+PFW NK WP L LK  V+ VV+  E V E+VE  A
Sbjct: 50  PALPSDPSSGSWKMWILGMIITVIIPFWRNKWWPLLKLKDRVESVVETAEHVTEIVEKVA 109

Query: 72  EGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVHKV 120
           E VEKV+EEVA+HLP+GG+L+++  FVEN AK  +KDAH+A +++ KV
Sbjct: 110 EEVEKVSEEVADHLPEGGKLKESVTFVENVAKETAKDAHLALEVIEKV 157

BLAST of MS001111 vs. ExPASy TrEMBL
Match: A0A6J1HCK6 (uncharacterized protein LOC111462754 OS=Cucurbita moschata OX=3662 GN=LOC111462754 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.7e-24
Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = 0

Query: 1   MAIYS-GEGLGFP-PLPDLPRQV-PWPLWMLGMLISAILPFW-GNKLW-PFLILKQNVDK 60
           MA+Y  G GLG P PLP  P  + PWPLW+ G ++SAIL  W   K W PFL+LKQ V+K
Sbjct: 58  MAVYGVGGGLGSPLPLPPPPPPLTPWPLWVAGAVLSAILSIWKTTKYWKPFLMLKQRVEK 117

Query: 61  VVDAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQI 120
           VV   E+V +MVETAAE V+KVAEE+A+HLP+   LQK A+ VEN A+T++KDA++A  I
Sbjct: 118 VVHVAEDVVDMVETAAEEVDKVAEEIADHLPKDSILQKTAVLVENTAETVAKDANLAADI 177

BLAST of MS001111 vs. ExPASy TrEMBL
Match: A0A067LA97 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15837 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.8e-24
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 0

Query: 1   MAIYSGEGLGFPPLPDLPRQVP--WPLWMLGMLISAILPFWGNKLWPFLILKQNVDKVVD 60
           M +Y+G   G P LP  P   P  W +W+LGMLI+ +LP W NK WP L LK  V+ VV+
Sbjct: 62  MVVYNGVDPG-PVLPSDPSSSPGSWKMWILGMLITVVLPVWRNKWWPLLTLKDRVESVVE 121

Query: 61  AVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIV 117
             E+V ++VE  AE +EKVAEEVA+HLP+GG+L+ A   VEN AK  +KDAH+  Q++
Sbjct: 122 TAEDVTDIVEKVAEKIEKVAEEVADHLPEGGKLKDAVTVVENVAKETAKDAHLVHQVI 178

BLAST of MS001111 vs. ExPASy TrEMBL
Match: A0A6J1K717 (uncharacterized protein LOC111492223 OS=Cucurbita maxima OX=3661 GN=LOC111492223 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.7e-23
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 0

Query: 1   MAIYSGEGLG------FPPLPDLPRQVPWPLWMLGMLISAILPFW-GNKLW-PFLILKQN 60
           MA+Y G G G       P  P  P   PWPLW+ G ++SAIL  W   K W PFL+LKQ 
Sbjct: 58  MAVYGGGGGGGGLGSPLPQPPPPPPLTPWPLWVAGAVLSAILSIWKTTKYWGPFLMLKQR 117

Query: 61  VDKVVDAVEEVAEMVETAAEGVEKVAEEVAEHLPQGGQLQKAALFVENAAKTLSKDAHVA 120
           V+KVV   E+V +MVETAA+ V+KV+EE+ +HLP+   LQK A+ VEN A+T++KDA++A
Sbjct: 118 VEKVVHVAEDVVDMVETAAKEVDKVSEEIVDHLPKDSILQKTAVLVENTAETVAKDANLA 177

BLAST of MS001111 vs. TAIR 10
Match: AT2G14095.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-12
Identity = 37/98 (37.76%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 23  WPLWMLGMLISAILPFWGN-KLWPFLILKQNVDKVVDAVEEVAEMVETAAEGVEKVAEEV 82
           W  W++G  IS +L FW N +L     ++   + VV+ VE VAEMVE  A   +++AEE+
Sbjct: 93  WGRWVIGSAISLVLSFWNNERLQKLKRIEGEAELVVEGVEAVAEMVEKVATATDEMAEEM 152

Query: 83  AEHLPQGGQLQKAALFVENAAKTLSKDAHVAEQIVHKV 120
           AE LP+  +L++ AL +E+ ++  + +AH+ +  +HKV
Sbjct: 153 AEKLPEKNKLKQVALVLEHISEVAAHEAHLTQDFLHKV 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132223.12.7e-5595.80uncharacterized protein LOC111005138 [Momordica charantia][more]
XP_038886507.19.5e-3265.57uncharacterized protein LOC120076681 isoform X3 [Benincasa hispida] >XP_03888657... [more]
XP_038886505.12.1e-3164.75uncharacterized protein LOC120076681 isoform X1 [Benincasa hispida][more]
XP_038886506.12.8e-3165.29uncharacterized protein LOC120076681 isoform X2 [Benincasa hispida] >XP_03888657... [more]
XP_023546969.13.9e-2556.45uncharacterized protein LOC111805911 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BVN61.3e-5595.80uncharacterized protein LOC111005138 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6A6LE812.1e-2453.70Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_002908 PE=4 SV=1[more]
A0A6J1HCK62.7e-2456.45uncharacterized protein LOC111462754 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A067LA977.8e-2450.85Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15837 PE=4 SV=1[more]
A0A6J1K7178.7e-2350.39uncharacterized protein LOC111492223 OS=Cucurbita maxima OX=3661 GN=LOC111492223... [more]
Match NameE-valueIdentityDescription
AT2G14095.11.0e-1237.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33735:SF14PHAGE CAPSID SCAFFOLDING PROTEIN (GPO) SERINE PEPTIDASEcoord: 12..119
NoneNo IPR availablePANTHERPTHR33735EXPRESSED PROTEINcoord: 12..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001111.1MS001111.1mRNA