MS001083 (gene) Bitter gourd (TR) v1

Overview


Name	MS001083
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	serine/arginine-rich splicing factor SC35-like
Location	scaffold36: 1350268 .. 1353268 (-)
RNA-Seq Expression	MS001083
Synteny	MS001083

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGTATCTCCCAACCCTAAATCTTTACTTCACTCTCAATCTCCATCTCTTTTTTCCTTTAATTTCTTCCCCTTTTTGTTTTTCTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGTTTCCCCCTTTATCTCTCTCTCTCTCGCGTTTAATCTTCTTCTTTTGATGTGTAATTTGTTGGTGGTAATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGTCAGCTTCAGTCCGACCAAAAACACACCTTATAACCTTCAGCTTTTTTCAATTTAACTTTAGCTGCTGTTTTTATGCCAAATCAAATTGGGTTTCTGCTTTCCTATTTAGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATGTAAATCTTCACCCTTTCAACTGCATAATTTCTCAAATTCTAATACGCACAAGTATGTTTTGATTCTCGCCCTTTTGGTTTGTTTATCAGTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGTGAGACTCCTTGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATGTTTTCTCGAGGTAATTGCCCTCATTTACTTGTGAATCCAAAAAACAGAAATCTATGTACTCTTCCGCATAGTCATATAGAGTGAAAGAGGTAATGCCTTCTTCAGTTCTTCTCGGGTTATGGATAAATTAAACTTCCTTGCTAGTTTACACGTCCTTTAGGATATTGATTTGCATCCTTTTATTGTTCTAATGGAATGGCTACATTTCTTGCGCATAGAATTAGCTTTGTGTACTAATCTCAGTTGATGTTGATGACCTCATATGGGTGATCAAAACTAGTTTGAAACATTGGTATTTTGTTAAATAGACAGACTATAAGGGCGTGATTTGTAATTATTCCTTTACTCAACATGTGTCTCTTTAGGGGGTGCTGAAATTTCAGTGCTGTATGGTGTTTACTGCGCCATGCTATTAGGAAATTCTAGAAAGTATTTTTCTTGAGTTGGTTCATAGATGCAATCACTTCTGGCCTTGTCATTTTGCTCACCTAAATTCAGTAGTGATACATCTTCCTGTCATTAATCTCTTGAATCCATTATGTTCTAAATTTTGTGGGGTATGGAGAAGATTAAACAAAAAGAGCAAAGGAAGCAAGTTGTTGCAATTATTCTAGTTTGAAATGTGAATGGGCATGATGTGATCACGAGTCACCTTTATCAACAGAGTGAATTTTAATGCATAGTGTAGTTTTAATTATCGTGGATTGATCTAGTGGTACTAGAGCATGTGAAAAAGTAAAGGGACTTTGGGAGGGGGTTCAAACTCATGATAGCCATCACATAATATAATATCCAGCAAATTTCTTGACAATCAAATGTTATAGGGGTAGGAGCCGTGCTGTGAGATTAGTCGAAATGGAAAGCTAGTCTTGGGATTGCTGTTTTTACCTAAAAGTGAATGTTTAAGTGGGCTTTGACACTCATGACTCATGAGTATCAAAAAAGAAAAAAAAAAATCCTGTGCGGTTTTATATTTGAAGAAAAAGATTAAAAGCTACAAATTGTTATAAAACTAGAACAAAATAAAAACAAGGAGAATATTAAGAGCCTAAGATGGAGAAGAGATGAAGAGAACTAGAGAAGAGAGTAGAGCAAATATGAGATGTCTCTATTGAGTTGTTGTGAGATGTATTTCACAAATGCTCCATACAACAACTGTTTATAAGGTTACAAAAACCAACATAAAGCGGAGACATGAGAGTTATGGGGGTTAATGGGGCTATGGGAGCTATGGACATCTAATTTAGAATATTCATGACACTCTCCCATTACAAGTAACTTCTTCTTTTGTCTCCAACATTGTTTTTCAGAAACTGGACTTCGGAGTAAATTACACATTATAAAAAACTATCTTAAGTTTGTTACAAACTTGTATTTGATCAACAACTATTGAGACAATTTTTTATGGGGCAGGGACAGAATGGTTTAGAAGGCTTGTCTTAGTCTGAGTTTCTAATGTTTACAAGCAGTTGATTGCTACCTCATTACTTTTAGCTTGTTATTCTACCCTTCTCATACTCATGGATTGACAAAAACATTTCAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGGTATTCAAATACTTTCTTAATATTTTATTAGTCATTATTTTTTAAAAGAACTTTTCCATTATAACATCTCGCACACCAAAGTCAATTATCTAACATTATTATTATATATCCTATTTTAAGTTTCTTGAGCATATCCAAACAAAATTTTCATATAATTTCATGGACATCTCACATTTCCATGAACAAAGCAAGGTCCTTATTCTTCATTCATTCTAATTATTTTCATTCTCTTTGCTTTGCACTCTAAATGGAAATGGATTTGATACTGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCGAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGT

mRNA sequence

ATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCGAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGT

Coding sequence (CDS)

ATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCGAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGT

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSPSPAKSDADVS

Homology

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BLAST of MS001083 vs. NCBI nr
Match: XP_022131916.1 (serine/arginine-rich splicing factor SC35-like [Momordica charantia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 241 PSPAKSDAD 250
           PSPAKSDAD
Sbjct: 241 PSPAKSDAD 249

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BLAST of MS001083 vs. NCBI nr
Match: KAA0064834.1 (serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 2.0e-108
Identity = 230/253 (90.91%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDADVS 252
           RSPSPA+SDADVS
Sbjct: 241 RSPSPARSDADVS 252

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BLAST of MS001083 vs. NCBI nr
Match: XP_008445340.1 (PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of MS001083 vs. NCBI nr
Match: XP_011649457.1 (serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 3.8e-107
Identity = 227/251 (90.44%), Postives = 239/251 (95.22%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPR++ PSR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of MS001083 vs. NCBI nr
Match: XP_038884086.1 (serine/arginine-rich splicing factor SC35-like [Benincasa hispida])

HSP 1 Score: 395.2 bits (1014), Expect = 4.2e-106
Identity = 227/251 (90.44%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDD RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDPRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTRRSP+TRRSISPRR+ P R RSDD  SP R+NGS    K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRRSPDTRRSISPRRTPPPRGRSDDEHSPSRDNGSS-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.1e-64
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 180
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 240
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 241 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 244
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-26
Identity = 104/228 (45.61%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P T    S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPPPT----SKRESNSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A6J1BQT1 (serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN=LOC111004937 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.7e-125
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 241 PSPAKSDAD 250
           PSPAKSDAD
Sbjct: 241 PSPAKSDAD 249

[Close]

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 9.8e-109
Identity = 230/253 (90.91%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDADVS 252
           RSPSPA+SDADVS
Sbjct: 241 RSPSPARSDADVS 252

[Close]

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A1S3BCG4 (serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103488401 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.3e-108
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A0A0LQG4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.8e-107
Identity = 227/251 (90.44%), Postives = 239/251 (95.22%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPR++ PSR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A6J1GJ79 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.9e-106
Identity = 229/253 (90.51%), Postives = 236/253 (93.28%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME-SSSKPRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VME SSSK RGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGR 180
           RSPR RHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERERHRSRSRSASPD NKDRRR R
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 181 DDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDS 240
            DDERRS S SDRSMSPTR SP+TRRSISPRR+PSR RSDD  SP+RENGS L  K V+S
Sbjct: 181 -DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGS-LDDKPVNS 240

Query: 241 RSPSPAKSDADVS 252
           RSPSPAKSDADVS
Sbjct: 241 RSPSPAKSDADVS 251

[Close]

BLAST of MS001083 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 180
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 240
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 241 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 244
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]

BLAST of MS001083 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 180
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 240
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 241 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 244
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]

BLAST of MS001083 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-13
Identity = 100/247 (40.49%), Postives = 125/247 (50.61%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS---------SKPRGRSRSRSP----- 136
           +DG +L GRE+ V FA+   N +K  + R  E           + PR  SRSRSP     
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRG 156

Query: 137 --RSRHRDDYR--DRDHRRRSRSRSRDRYDRDRPH-RERERHRSRSRSASPDRNKDRRRG 196
             RSR  D Y    R H  RS S   +RYD  R + R      SR RS +P R K   R 
Sbjct: 157 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKS--RS 216

Query: 197 RDDDERRSISNSD-RSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLV 244
                RRSIS S  RS SP   SP   RS+SPRRS SRS      SP+R   S  +P+  
Sbjct: 217 LSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRS-PRRSRSPRRSRRS-YTPEPA 274

[Close]

BLAST of MS001083 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10
Identity = 85/245 (34.69%), Postives = 116/245 (47.35%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKP-RGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+              E+  KP   R+R R  
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--------------ENRKKPTEMRTRDRGG 146

Query: 124 RSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRS-ASPDRNKDRRRGRDDD 183
           RS          +R + R RS  RY R  P R   R RSRSR   SP   + + R     
Sbjct: 147 RS----------NRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQ 206

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSP 243
           +RR       S SP        RS SP R  S SRS       R+N S  +P+   S+SP
Sbjct: 207 DRRYEKERSYSRSPPHNGSRV-RSGSPGRVKSHSRSPRRSVSPRKNRS-YTPEQARSQSP 243

Query: 244 SPAKS 247
            P +S
Sbjct: 267 VPRQS 243

[Close]

BLAST of MS001083 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 0


Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRG---RSRSRSPRSRHRDDYRDRD 137
           + +++ GREI + FA+   N +  ++ R    +S   G   R+  RSPR R+R   R R 
Sbjct: 109 NHKVIGGREIAIVFAE--ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 168

Query: 138 HRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMS 197
             RR    S+ R   D  +  R R RS SRS  P RN+   + R+               
Sbjct: 169 PPRRESRHSKVR--EDDLYSPRRRSRSISRSPLP-RNEREYKSRN--------------- 228

Query: 198 PTRRSPNTRRSISPRRSPSRSRS 218
              RSP   R ++P RS   SRS
Sbjct: 229 --CRSPREERVLTPIRSRCLSRS 229

The following BLAST results are available for this feature:

BLAST of MS001083 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131916.1	1.2e-124	100.00	serine/arginine-rich splicing factor SC35-like [Momordica charantia]	[more]
KAA0064834.1	2.0e-108	90.91	serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]	[more]
XP_008445340.1	1.7e-107	90.84	PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]	[more]
XP_011649457.1	3.8e-107	90.44	serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]	[more]
XP_038884086.1	4.2e-106	90.44	serine/arginine-rich splicing factor SC35-like [Benincasa hispida]	[more]

BLAST of MS001083 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	4.1e-64	61.13	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	3.4e-26	45.61	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	4.5e-26	45.18	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	4.5e-26	45.18	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	4.5e-26	45.18	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of MS001083 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQT1	5.7e-125	100.00	serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN...	[more]
A0A5A7VC44	9.8e-109	90.91	Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BCG4	8.3e-108	90.84	serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LQG4	1.8e-107	90.44	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV...	[more]
A0A6J1GJ79	5.9e-106	90.51	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata ...	[more]

BLAST of MS001083 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	2.9e-65	61.13	ortholog of human splicing factor SC35	[more]
AT5G64200.2	2.9e-65	61.13	ortholog of human splicing factor SC35	[more]
AT1G55310.1	1.5e-13	40.49	SC35-like splicing factor 33	[more]
AT3G13570.1	3.5e-10	34.69	SC35-like splicing factor 30A	[more]
AT5G18810.1	1.8e-09	33.00	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 e-value: 6.4E-21 score: 74.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..104 e-value: 9.2E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..235
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..235
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001083.1	MS001083.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding