MS001083 (gene) Bitter gourd (TR) v1

Overview
NameMS001083
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine/arginine-rich splicing factor SC35-like
Locationscaffold36: 1350268 .. 1353268 (-)
RNA-Seq ExpressionMS001083
SyntenyMS001083
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGTATCTCCCAACCCTAAATCTTTACTTCACTCTCAATCTCCATCTCTTTTTTCCTTTAATTTCTTCCCCTTTTTGTTTTTCTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGTTTCCCCCTTTATCTCTCTCTCTCTCGCGTTTAATCTTCTTCTTTTGATGTGTAATTTGTTGGTGGTAATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGTCAGCTTCAGTCCGACCAAAAACACACCTTATAACCTTCAGCTTTTTTCAATTTAACTTTAGCTGCTGTTTTTATGCCAAATCAAATTGGGTTTCTGCTTTCCTATTTAGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATGTAAATCTTCACCCTTTCAACTGCATAATTTCTCAAATTCTAATACGCACAAGTATGTTTTGATTCTCGCCCTTTTGGTTTGTTTATCAGTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGTGAGACTCCTTGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATGTTTTCTCGAGGTAATTGCCCTCATTTACTTGTGAATCCAAAAAACAGAAATCTATGTACTCTTCCGCATAGTCATATAGAGTGAAAGAGGTAATGCCTTCTTCAGTTCTTCTCGGGTTATGGATAAATTAAACTTCCTTGCTAGTTTACACGTCCTTTAGGATATTGATTTGCATCCTTTTATTGTTCTAATGGAATGGCTACATTTCTTGCGCATAGAATTAGCTTTGTGTACTAATCTCAGTTGATGTTGATGACCTCATATGGGTGATCAAAACTAGTTTGAAACATTGGTATTTTGTTAAATAGACAGACTATAAGGGCGTGATTTGTAATTATTCCTTTACTCAACATGTGTCTCTTTAGGGGGTGCTGAAATTTCAGTGCTGTATGGTGTTTACTGCGCCATGCTATTAGGAAATTCTAGAAAGTATTTTTCTTGAGTTGGTTCATAGATGCAATCACTTCTGGCCTTGTCATTTTGCTCACCTAAATTCAGTAGTGATACATCTTCCTGTCATTAATCTCTTGAATCCATTATGTTCTAAATTTTGTGGGGTATGGAGAAGATTAAACAAAAAGAGCAAAGGAAGCAAGTTGTTGCAATTATTCTAGTTTGAAATGTGAATGGGCATGATGTGATCACGAGTCACCTTTATCAACAGAGTGAATTTTAATGCATAGTGTAGTTTTAATTATCGTGGATTGATCTAGTGGTACTAGAGCATGTGAAAAAGTAAAGGGACTTTGGGAGGGGGTTCAAACTCATGATAGCCATCACATAATATAATATCCAGCAAATTTCTTGACAATCAAATGTTATAGGGGTAGGAGCCGTGCTGTGAGATTAGTCGAAATGGAAAGCTAGTCTTGGGATTGCTGTTTTTACCTAAAAGTGAATGTTTAAGTGGGCTTTGACACTCATGACTCATGAGTATCAAAAAAGAAAAAAAAAAATCCTGTGCGGTTTTATATTTGAAGAAAAAGATTAAAAGCTACAAATTGTTATAAAACTAGAACAAAATAAAAACAAGGAGAATATTAAGAGCCTAAGATGGAGAAGAGATGAAGAGAACTAGAGAAGAGAGTAGAGCAAATATGAGATGTCTCTATTGAGTTGTTGTGAGATGTATTTCACAAATGCTCCATACAACAACTGTTTATAAGGTTACAAAAACCAACATAAAGCGGAGACATGAGAGTTATGGGGGTTAATGGGGCTATGGGAGCTATGGACATCTAATTTAGAATATTCATGACACTCTCCCATTACAAGTAACTTCTTCTTTTGTCTCCAACATTGTTTTTCAGAAACTGGACTTCGGAGTAAATTACACATTATAAAAAACTATCTTAAGTTTGTTACAAACTTGTATTTGATCAACAACTATTGAGACAATTTTTTATGGGGCAGGGACAGAATGGTTTAGAAGGCTTGTCTTAGTCTGAGTTTCTAATGTTTACAAGCAGTTGATTGCTACCTCATTACTTTTAGCTTGTTATTCTACCCTTCTCATACTCATGGATTGACAAAAACATTTCAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGGTATTCAAATACTTTCTTAATATTTTATTAGTCATTATTTTTTAAAAGAACTTTTCCATTATAACATCTCGCACACCAAAGTCAATTATCTAACATTATTATTATATATCCTATTTTAAGTTTCTTGAGCATATCCAAACAAAATTTTCATATAATTTCATGGACATCTCACATTTCCATGAACAAAGCAAGGTCCTTATTCTTCATTCATTCTAATTATTTTCATTCTCTTTGCTTTGCACTCTAAATGGAAATGGATTTGATACTGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCGAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGT

mRNA sequence

ATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCGAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGT

Coding sequence (CDS)

ATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCGAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGT

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSPSPAKSDADVS
Homology
BLAST of MS001083 vs. NCBI nr
Match: XP_022131916.1 (serine/arginine-rich splicing factor SC35-like [Momordica charantia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 241 PSPAKSDAD 250
           PSPAKSDAD
Sbjct: 241 PSPAKSDAD 249

BLAST of MS001083 vs. NCBI nr
Match: KAA0064834.1 (serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 2.0e-108
Identity = 230/253 (90.91%), Postives = 240/253 (94.86%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDADVS 252
           RSPSPA+SDADVS
Sbjct: 241 RSPSPARSDADVS 252

BLAST of MS001083 vs. NCBI nr
Match: XP_008445340.1 (PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

BLAST of MS001083 vs. NCBI nr
Match: XP_011649457.1 (serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 3.8e-107
Identity = 227/251 (90.44%), Postives = 239/251 (95.22%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPR++ PSR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

BLAST of MS001083 vs. NCBI nr
Match: XP_038884086.1 (serine/arginine-rich splicing factor SC35-like [Benincasa hispida])

HSP 1 Score: 395.2 bits (1014), Expect = 4.2e-106
Identity = 227/251 (90.44%), Postives = 236/251 (94.02%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDD RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDPRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTRRSP+TRRSISPRR+ P R RSDD  SP R+NGS    K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRRSPDTRRSISPRRTPPPRGRSDDEHSPSRDNGSS-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.1e-64
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 180
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 240
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 241 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 244
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-26
Identity = 104/228 (45.61%), Postives = 131/228 (57.46%), Query Frame = 0

Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P T    S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPPPT----SKRESNSRSRSKSPPKSPEEEGA 218

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0

Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0

Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

BLAST of MS001083 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0

Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 183
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 230
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A6J1BQT1 (serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN=LOC111004937 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.7e-125
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 241 PSPAKSDAD 250
           PSPAKSDAD
Sbjct: 241 PSPAKSDAD 249

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 9.8e-109
Identity = 230/253 (90.91%), Postives = 240/253 (94.86%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDADVS 252
           RSPSPA+SDADVS
Sbjct: 241 RSPSPARSDADVS 252

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A1S3BCG4 (serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103488401 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.3e-108
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A0A0LQG4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.8e-107
Identity = 227/251 (90.44%), Postives = 239/251 (95.22%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 180
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 240
           DDERRS S+SDRSMSPTR SP+TRRSISPR++ PSR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 241 RSPSPAKSDAD 250
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

BLAST of MS001083 vs. ExPASy TrEMBL
Match: A0A6J1GJ79 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.9e-106
Identity = 229/253 (90.51%), Postives = 236/253 (93.28%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME-SSSKPRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VME SSSK RGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGR 180
           RSPR RHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERERHRSRSRSASPD NKDRRR R
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 181 DDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDS 240
            DDERRS S SDRSMSPTR SP+TRRSISPRR+PSR RSDD  SP+RENGS L  K V+S
Sbjct: 181 -DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGS-LDDKPVNS 240

Query: 241 RSPSPAKSDADVS 252
           RSPSPAKSDADVS
Sbjct: 241 RSPSPAKSDADVS 251

BLAST of MS001083 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 180
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 240
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 241 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 244
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

BLAST of MS001083 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0

Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 180
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 240
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 241 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 244
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

BLAST of MS001083 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-13
Identity = 100/247 (40.49%), Postives = 125/247 (50.61%), Query Frame = 0

Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS---------SKPRGRSRSRSP----- 136
           +DG +L GRE+ V FA+   N +K  + R  E           + PR  SRSRSP     
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRG 156

Query: 137 --RSRHRDDYR--DRDHRRRSRSRSRDRYDRDRPH-RERERHRSRSRSASPDRNKDRRRG 196
             RSR  D Y    R H  RS S   +RYD  R + R      SR RS +P R K   R 
Sbjct: 157 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKS--RS 216

Query: 197 RDDDERRSISNSD-RSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLV 244
                RRSIS S  RS SP   SP   RS+SPRRS SRS      SP+R   S  +P+  
Sbjct: 217 LSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRS-PRRSRSPRRSRRS-YTPEPA 274

BLAST of MS001083 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10
Identity = 85/245 (34.69%), Postives = 116/245 (47.35%), Query Frame = 0

Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKP-RGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+              E+  KP   R+R R  
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--------------ENRKKPTEMRTRDRGG 146

Query: 124 RSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRS-ASPDRNKDRRRGRDDD 183
           RS          +R + R RS  RY R  P R   R RSRSR   SP   + + R     
Sbjct: 147 RS----------NRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQ 206

Query: 184 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSP 243
           +RR       S SP        RS SP R  S SRS       R+N S  +P+   S+SP
Sbjct: 207 DRRYEKERSYSRSPPHNGSRV-RSGSPGRVKSHSRSPRRSVSPRKNRS-YTPEQARSQSP 243

Query: 244 SPAKS 247
            P +S
Sbjct: 267 VPRQS 243

BLAST of MS001083 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 0

Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRG---RSRSRSPRSRHRDDYRDRD 137
           + +++ GREI + FA+   N +  ++ R    +S   G   R+  RSPR R+R   R R 
Sbjct: 109 NHKVIGGREIAIVFAE--ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 168

Query: 138 HRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMS 197
             RR    S+ R   D  +  R R RS SRS  P RN+   + R+               
Sbjct: 169 PPRRESRHSKVR--EDDLYSPRRRSRSISRSPLP-RNEREYKSRN--------------- 228

Query: 198 PTRRSPNTRRSISPRRSPSRSRS 218
              RSP   R ++P RS   SRS
Sbjct: 229 --CRSPREERVLTPIRSRCLSRS 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131916.11.2e-124100.00serine/arginine-rich splicing factor SC35-like [Momordica charantia][more]
KAA0064834.12.0e-10890.91serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa][more]
XP_008445340.11.7e-10790.84PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo][more]
XP_011649457.13.8e-10790.44serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus][more]
XP_038884086.14.2e-10690.44serine/arginine-rich splicing factor SC35-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9FMG44.1e-6461.13Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3... [more]
P303523.4e-2645.61Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV... [more]
Q3MHR54.5e-2645.18Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3[more]
Q011304.5e-2645.18Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=... [more]
Q620934.5e-2645.18Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A6J1BQT15.7e-125100.00serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN... [more]
A0A5A7VC449.8e-10990.91Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3BCG48.3e-10890.84serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0LQG41.8e-10790.44RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV... [more]
A0A6J1GJ795.9e-10690.51serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata ... [more]
Match NameE-valueIdentityDescription
AT5G64200.12.9e-6561.13ortholog of human splicing factor SC35 [more]
AT5G64200.22.9e-6561.13ortholog of human splicing factor SC35 [more]
AT1G55310.11.5e-1340.49SC35-like splicing factor 33 [more]
AT3G13570.13.5e-1034.69SC35-like splicing factor 30A [more]
AT5G18810.11.8e-0933.00SC35-like splicing factor 28 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..90
e-value: 5.3E-25
score: 99.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..87
e-value: 6.4E-21
score: 74.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..94
score: 19.570105
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..104
e-value: 9.2E-28
score: 99.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..115
NoneNo IPR availablePANTHERPTHR23147:SF161OS08G0486200 PROTEINcoord: 1..235
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 1..235
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 8..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001083.1MS001083.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding