MS000826 (gene) Bitter gourd (TR) v1

Overview
NameMS000826
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionExo_endo_phos domain-containing protein
Locationscaffold236: 177968 .. 178225 (+)
RNA-Seq ExpressionMS000826
SyntenyMS000826
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTGAATACCTCCACGAAACGTAGAGAGGTACGCACGTTTATCTCTTCGATATGTTCAGATTTCTGTTGTTTGTTGGAAACAAGGGTTCTTCGTCATACTTTTGCCTCCATTTTCCAGCCCTTTGCGGATCAGTGGCAGTGTGTTAGTAGTTACAGTGTTGTGGATTTTGGGAGGATTTGGGTGATGTGGCGTCCCAATCGCTATGTTTTCACTCCCATTACTGTGTCTTCTCAATATGTGTATGGGACCCTGTTT

mRNA sequence

GGCTTGAATACCTCCACGAAACGTAGAGAGGTACGCACGTTTATCTCTTCGATATGTTCAGATTTCTGTTGTTTGTTGGAAACAAGGGTTCTTCGTCATACTTTTGCCTCCATTTTCCAGCCCTTTGCGGATCAGTGGCAGTGTGTTAGTAGTTACAGTGTTGTGGATTTTGGGAGGATTTGGGTGATGTGGCGTCCCAATCGCTATGTTTTCACTCCCATTACTGTGTCTTCTCAATATGTGTATGGGACCCTGTTT

Coding sequence (CDS)

GGCTTGAATACCTCCACGAAACGTAGAGAGGTACGCACGTTTATCTCTTCGATATGTTCAGATTTCTGTTGTTTGTTGGAAACAAGGGTTCTTCGTCATACTTTTGCCTCCATTTTCCAGCCCTTTGCGGATCAGTGGCAGTGTGTTAGTAGTTACAGTGTTGTGGATTTTGGGAGGATTTGGGTGATGTGGCGTCCCAATCGCTATGTTTTCACTCCCATTACTGTGTCTTCTCAATATGTGTATGGGACCCTGTTT

Protein sequence

GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRPNRYVFTPITVSSQYVYGTLF
Homology
BLAST of MS000826 vs. NCBI nr
Match: XP_038895804.1 (uncharacterized protein LOC120083970 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 1   GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
           GLN   K R V  F++S    F CLLETRV R  F  +   F D W C+ SYSV   GRI
Sbjct: 50  GLNDPVKCRVVADFLASSSVTFYCLLETRVRRENFGMVMSRFGDAWSCMCSYSVQGVGRI 109

Query: 61  WVMWRPNRYVFTPITVSSQYVYGTL 86
           WVMWR + Y F+      Q++YGTL
Sbjct: 110 WVMWRKSVYDFSIDISGDQFIYGTL 134

BLAST of MS000826 vs. NCBI nr
Match: XP_038888122.1 (uncharacterized protein LOC120078021 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 4.6e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 1   GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
           GLN   K R V  F++S    FC LL+TRV R  F  +   F D+W CV SYSV   GRI
Sbjct: 40  GLNDPVKCRVVVDFLASSSVTFCYLLKTRVCRENFGMVMGKFGDEWSCVCSYSVRGVGRI 99

Query: 61  WVMWRPNRYVFTPITVSSQYVYGTL 86
           W+MW+ + Y F+      Q+++GTL
Sbjct: 100 WIMWQKSVYKFSIDISGDQFIFGTL 124

BLAST of MS000826 vs. NCBI nr
Match: KAA0049770.1 (hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK12107.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 7   KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
           K + V  F+ S    FCCLLETRV    FAS+ + F + W    SYS    GRIWVMW+ 
Sbjct: 213 KSKAVVDFLGSSSMGFCCLLETRVREGNFASVSRRFGNSWDYSCSYSNSGVGRIWVMWKK 272

Query: 67  NRYVFTPITVSSQYVYGTL 86
           NR+ F+   +  Q+V GTL
Sbjct: 273 NRFSFSTHVMDEQFVTGTL 291

BLAST of MS000826 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0

Query: 1   GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
           G+ +  K + V  F+ S    FCCLLETRV    F  + + F + W    SYS    GRI
Sbjct: 279 GVLSDLKSKAVSDFLGSSSVGFCCLLETRVRESNFDYVSRRFGNSWDYSCSYSNSGVGRI 338

Query: 61  WVMWRPNRYVFTPITVSSQYVYGTL 86
           WV+W+ NR+ F+   V  Q+V GTL
Sbjct: 339 WVVWKKNRFSFSTCVVDEQFVTGTL 363

BLAST of MS000826 vs. NCBI nr
Match: KAA0062319.1 (hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 7   KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
           K + V  F+ S    FCCLLETRV    F S+ + F + W    SYS    GRIWVMW+ 
Sbjct: 46  KSKAVVDFLGSSSVGFCCLLETRVREGNFDSVSRKFGNSWDYSCSYSNSGVGRIWVMWKK 105

Query: 67  NRYVFTPITVSSQYVYGTL 86
           NR+ F+   +  Q+V GTL
Sbjct: 106 NRFSFSTHVMDEQFVTGTL 124

BLAST of MS000826 vs. ExPASy TrEMBL
Match: A0A5A7U3C2 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00410 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 7   KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
           K + V  F+ S    FCCLLETRV    FAS+ + F + W    SYS    GRIWVMW+ 
Sbjct: 213 KSKAVVDFLGSSSMGFCCLLETRVREGNFASVSRRFGNSWDYSCSYSNSGVGRIWVMWKK 272

Query: 67  NRYVFTPITVSSQYVYGTL 86
           NR+ F+   +  Q+V GTL
Sbjct: 273 NRFSFSTHVMDEQFVTGTL 291

BLAST of MS000826 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0

Query: 1   GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
           G+ +  K + V  F+ S    FCCLLETRV    F  + + F + W    SYS    GRI
Sbjct: 279 GVLSDLKSKAVSDFLGSSSVGFCCLLETRVRESNFDYVSRRFGNSWDYSCSYSNSGVGRI 338

Query: 61  WVMWRPNRYVFTPITVSSQYVYGTL 86
           WV+W+ NR+ F+   V  Q+V GTL
Sbjct: 339 WVVWKKNRFSFSTCVVDEQFVTGTL 363

BLAST of MS000826 vs. ExPASy TrEMBL
Match: A0A5A7V9D6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00700 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 7   KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
           K + V  F+ S    FCCLLETRV    F S+ + F + W    SYS    GRIWVMW+ 
Sbjct: 46  KSKAVVDFLGSSSVGFCCLLETRVREGNFDSVSRKFGNSWDYSCSYSNSGVGRIWVMWKK 105

Query: 67  NRYVFTPITVSSQYVYGTL 86
           NR+ F+   +  Q+V GTL
Sbjct: 106 NRFSFSTHVMDEQFVTGTL 124

BLAST of MS000826 vs. ExPASy TrEMBL
Match: A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 2   LNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIW 61
           L    K + V  F+ S    FCCLLETRV    F ++ + F + W    SYS  D GRIW
Sbjct: 159 LPIQVKCKAVFDFLGSSSVGFCCLLETRVRESNFETVSRRFGNSWDFSYSYSNSDLGRIW 218

Query: 62  VMWRPNRYVFTPITVSSQYVYGTL 86
           VMW+ NR+ F+   V  Q+V  TL
Sbjct: 219 VMWKKNRFSFSTRVVDKQFVTRTL 242

BLAST of MS000826 vs. ExPASy TrEMBL
Match: A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 10  EVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRPNRY 69
           +V + ISS    FCCLLETRV    F S+ + F++ W    SYS    GRIWVMW+ NR+
Sbjct: 445 DVLSGISSSIVGFCCLLETRVREGNFDSVSRRFSNSWDYSCSYSNSGVGRIWVMWKKNRF 504

Query: 70  VFTPITVSSQYVYGTL 86
            F+   +  Q+V GTL
Sbjct: 505 SFSTHVMDEQFVTGTL 520

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895804.14.2e-1348.24uncharacterized protein LOC120083970 [Benincasa hispida][more]
XP_038888122.14.6e-1244.71uncharacterized protein LOC120078021 [Benincasa hispida][more]
KAA0049770.12.5e-1045.57hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK1210... [more]
KAA0062888.19.6e-1041.18non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
KAA0062319.11.3e-0944.30hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3C21.2e-1045.57Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc... [more]
A0A5A7V5J24.7e-1041.18Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5A7V9D66.1e-1044.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TKU41.0e-0942.86Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5A7SPE51.8e-0946.05Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000826.1MS000826.1mRNA