Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTGAATACCTCCACGAAACGTAGAGAGGTACGCACGTTTATCTCTTCGATATGTTCAGATTTCTGTTGTTTGTTGGAAACAAGGGTTCTTCGTCATACTTTTGCCTCCATTTTCCAGCCCTTTGCGGATCAGTGGCAGTGTGTTAGTAGTTACAGTGTTGTGGATTTTGGGAGGATTTGGGTGATGTGGCGTCCCAATCGCTATGTTTTCACTCCCATTACTGTGTCTTCTCAATATGTGTATGGGACCCTGTTT
mRNA sequence
GGCTTGAATACCTCCACGAAACGTAGAGAGGTACGCACGTTTATCTCTTCGATATGTTCAGATTTCTGTTGTTTGTTGGAAACAAGGGTTCTTCGTCATACTTTTGCCTCCATTTTCCAGCCCTTTGCGGATCAGTGGCAGTGTGTTAGTAGTTACAGTGTTGTGGATTTTGGGAGGATTTGGGTGATGTGGCGTCCCAATCGCTATGTTTTCACTCCCATTACTGTGTCTTCTCAATATGTGTATGGGACCCTGTTT
Coding sequence (CDS)
GGCTTGAATACCTCCACGAAACGTAGAGAGGTACGCACGTTTATCTCTTCGATATGTTCAGATTTCTGTTGTTTGTTGGAAACAAGGGTTCTTCGTCATACTTTTGCCTCCATTTTCCAGCCCTTTGCGGATCAGTGGCAGTGTGTTAGTAGTTACAGTGTTGTGGATTTTGGGAGGATTTGGGTGATGTGGCGTCCCAATCGCTATGTTTTCACTCCCATTACTGTGTCTTCTCAATATGTGTATGGGACCCTGTTT
Protein sequence
GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRPNRYVFTPITVSSQYVYGTLF
Homology
BLAST of MS000826 vs. NCBI nr
Match:
XP_038895804.1 (uncharacterized protein LOC120083970 [Benincasa hispida])
HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 0
Query: 1 GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
GLN K R V F++S F CLLETRV R F + F D W C+ SYSV GRI
Sbjct: 50 GLNDPVKCRVVADFLASSSVTFYCLLETRVRRENFGMVMSRFGDAWSCMCSYSVQGVGRI 109
Query: 61 WVMWRPNRYVFTPITVSSQYVYGTL 86
WVMWR + Y F+ Q++YGTL
Sbjct: 110 WVMWRKSVYDFSIDISGDQFIYGTL 134
BLAST of MS000826 vs. NCBI nr
Match:
XP_038888122.1 (uncharacterized protein LOC120078021 [Benincasa hispida])
HSP 1 Score: 81.3 bits (199), Expect = 4.6e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0
Query: 1 GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
GLN K R V F++S FC LL+TRV R F + F D+W CV SYSV GRI
Sbjct: 40 GLNDPVKCRVVVDFLASSSVTFCYLLKTRVCRENFGMVMGKFGDEWSCVCSYSVRGVGRI 99
Query: 61 WVMWRPNRYVFTPITVSSQYVYGTL 86
W+MW+ + Y F+ Q+++GTL
Sbjct: 100 WIMWQKSVYKFSIDISGDQFIFGTL 124
BLAST of MS000826 vs. NCBI nr
Match:
KAA0049770.1 (hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK12107.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0
Query: 7 KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
K + V F+ S FCCLLETRV FAS+ + F + W SYS GRIWVMW+
Sbjct: 213 KSKAVVDFLGSSSMGFCCLLETRVREGNFASVSRRFGNSWDYSCSYSNSGVGRIWVMWKK 272
Query: 67 NRYVFTPITVSSQYVYGTL 86
NR+ F+ + Q+V GTL
Sbjct: 273 NRFSFSTHVMDEQFVTGTL 291
BLAST of MS000826 vs. NCBI nr
Match:
KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0
Query: 1 GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
G+ + K + V F+ S FCCLLETRV F + + F + W SYS GRI
Sbjct: 279 GVLSDLKSKAVSDFLGSSSVGFCCLLETRVRESNFDYVSRRFGNSWDYSCSYSNSGVGRI 338
Query: 61 WVMWRPNRYVFTPITVSSQYVYGTL 86
WV+W+ NR+ F+ V Q+V GTL
Sbjct: 339 WVVWKKNRFSFSTCVVDEQFVTGTL 363
BLAST of MS000826 vs. NCBI nr
Match:
KAA0062319.1 (hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa])
HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 0
Query: 7 KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
K + V F+ S FCCLLETRV F S+ + F + W SYS GRIWVMW+
Sbjct: 46 KSKAVVDFLGSSSVGFCCLLETRVREGNFDSVSRKFGNSWDYSCSYSNSGVGRIWVMWKK 105
Query: 67 NRYVFTPITVSSQYVYGTL 86
NR+ F+ + Q+V GTL
Sbjct: 106 NRFSFSTHVMDEQFVTGTL 124
BLAST of MS000826 vs. ExPASy TrEMBL
Match:
A0A5A7U3C2 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00410 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0
Query: 7 KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
K + V F+ S FCCLLETRV FAS+ + F + W SYS GRIWVMW+
Sbjct: 213 KSKAVVDFLGSSSMGFCCLLETRVREGNFASVSRRFGNSWDYSCSYSNSGVGRIWVMWKK 272
Query: 67 NRYVFTPITVSSQYVYGTL 86
NR+ F+ + Q+V GTL
Sbjct: 273 NRFSFSTHVMDEQFVTGTL 291
BLAST of MS000826 vs. ExPASy TrEMBL
Match:
A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0
Query: 1 GLNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRI 60
G+ + K + V F+ S FCCLLETRV F + + F + W SYS GRI
Sbjct: 279 GVLSDLKSKAVSDFLGSSSVGFCCLLETRVRESNFDYVSRRFGNSWDYSCSYSNSGVGRI 338
Query: 61 WVMWRPNRYVFTPITVSSQYVYGTL 86
WV+W+ NR+ F+ V Q+V GTL
Sbjct: 339 WVVWKKNRFSFSTCVVDEQFVTGTL 363
BLAST of MS000826 vs. ExPASy TrEMBL
Match:
A0A5A7V9D6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00700 PE=4 SV=1)
HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 0
Query: 7 KRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRP 66
K + V F+ S FCCLLETRV F S+ + F + W SYS GRIWVMW+
Sbjct: 46 KSKAVVDFLGSSSVGFCCLLETRVREGNFDSVSRKFGNSWDYSCSYSNSGVGRIWVMWKK 105
Query: 67 NRYVFTPITVSSQYVYGTL 86
NR+ F+ + Q+V GTL
Sbjct: 106 NRFSFSTHVMDEQFVTGTL 124
BLAST of MS000826 vs. ExPASy TrEMBL
Match:
A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 0
Query: 2 LNTSTKRREVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIW 61
L K + V F+ S FCCLLETRV F ++ + F + W SYS D GRIW
Sbjct: 159 LPIQVKCKAVFDFLGSSSVGFCCLLETRVRESNFETVSRRFGNSWDFSYSYSNSDLGRIW 218
Query: 62 VMWRPNRYVFTPITVSSQYVYGTL 86
VMW+ NR+ F+ V Q+V TL
Sbjct: 219 VMWKKNRFSFSTRVVDKQFVTRTL 242
BLAST of MS000826 vs. ExPASy TrEMBL
Match:
A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0
Query: 10 EVRTFISSICSDFCCLLETRVLRHTFASIFQPFADQWQCVSSYSVVDFGRIWVMWRPNRY 69
+V + ISS FCCLLETRV F S+ + F++ W SYS GRIWVMW+ NR+
Sbjct: 445 DVLSGISSSIVGFCCLLETRVREGNFDSVSRRFSNSWDYSCSYSNSGVGRIWVMWKKNRF 504
Query: 70 VFTPITVSSQYVYGTL 86
F+ + Q+V GTL
Sbjct: 505 SFSTHVMDEQFVTGTL 520
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038895804.1 | 4.2e-13 | 48.24 | uncharacterized protein LOC120083970 [Benincasa hispida] | [more] |
XP_038888122.1 | 4.6e-12 | 44.71 | uncharacterized protein LOC120078021 [Benincasa hispida] | [more] |
KAA0049770.1 | 2.5e-10 | 45.57 | hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK1210... | [more] |
KAA0062888.1 | 9.6e-10 | 41.18 | non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... | [more] |
KAA0062319.1 | 1.3e-09 | 44.30 | hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U3C2 | 1.2e-10 | 45.57 | Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc... | [more] |
A0A5A7V5J2 | 4.7e-10 | 41.18 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
A0A5A7V9D6 | 6.1e-10 | 44.30 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TKU4 | 1.0e-09 | 42.86 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
A0A5A7SPE5 | 1.8e-09 | 46.05 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
Match Name | E-value | Identity | Description | |