Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAGGGATCCTCCCCTGCGAATTCGGTGGCGGCGGCGGCAGCAGCGACGGCGGCCTCCACGGCGGCGAGTCTTGCAGCGCTTCCAACAAAAAATCGAAGTACGACGTCGGAGACATTTTCTTCGGTAGGGATGATATGAAAGAATTCGTATGGGACGGTGTTTTCACTGAAGAAACAGTTCGATTTCTGGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAAGAAAAGCAAGAGAAGGCTACAAACATTTGATTGCTTCGAGTTCTTGAAACTCGTCTGGTGTTTCAAATTA
mRNA sequence
ATGGCCAGAGGGATCCTCCCCTGCGAATTCGGTGGCGGCGGCGGCAGCAGCGACGGCGGCCTCCACGGCGGCGAGTCTTGCAGCGCTTCCAACAAAAAATCGAAGTACGACGTCGGAGACATTTTCTTCGGTAGGGATGATATGAAAGAATTCGTATGGGACGGTGTTTTCACTGAAGAAACAGTTCGATTTCTGGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAAGAAAAGCAAGAGAAGGCTACAAACATTTGATTGCTTCGAGTTCTTGAAACTCGTCTGGTGTTTCAAATTA
Coding sequence (CDS)
ATGGCCAGAGGGATCCTCCCCTGCGAATTCGGTGGCGGCGGCGGCAGCAGCGACGGCGGCCTCCACGGCGGCGAGTCTTGCAGCGCTTCCAACAAAAAATCGAAGTACGACGTCGGAGACATTTTCTTCGGTAGGGATGATATGAAAGAATTCGTATGGGACGGTGTTTTCACTGAAGAAACAGTTCGATTTCTGGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAAGAAAAGCAAGAGAAGGCTACAAACATTTGATTGCTTCGAGTTCTTGAAACTCGTCTGGTGTTTCAAATTA
Protein sequence
MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTEETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFKL
Homology
BLAST of MS000313 vs. NCBI nr
Match:
KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 121.7 bits (304), Expect = 3.5e-24
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 0
Query: 1 MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYD-VGDIFFGRDDMKEFVWDGVFTE 60
MAR LP EFG GG GG+SCS+ SKYD VGDIFFG+DDMK +VWD VFTE
Sbjct: 1 MARDTLPYEFGVGG--------GGKSCSS---PSKYDVVGDIFFGKDDMKGYVWDEVFTE 60
Query: 61 ETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCF 98
ETVRFLE ESA++ LRK+SKRRL+TF CFEFLK +WCF
Sbjct: 61 ETVRFLETESAVEVLRKRSKRRLETFKCFEFLKFLWCF 87
BLAST of MS000313 vs. NCBI nr
Match:
KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])
HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0
Query: 1 MARGILPCEFGGGG-GSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTE 60
MAR ILP EFGGGG G S+ G GDIFFG+DDMKE+ WDGV+TE
Sbjct: 1 MARDILPFEFGGGGAGESERG------------------GDIFFGKDDMKEYAWDGVYTE 60
Query: 61 ETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
ETVRF+E ESA KALRK+S+R+L+ F+CFEFLK+VWCFK
Sbjct: 61 ETVRFIETESAKKALRKRSRRKLEPFNCFEFLKIVWCFK 81
BLAST of MS000313 vs. NCBI nr
Match:
KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 0
Query: 1 MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTEE 60
MAR ILP EFGGGG GGES GD+FFG+DDMKE+ WDGV+TEE
Sbjct: 1 MARDILPFEFGGGG--------GGESERG---------GDVFFGKDDMKEYAWDGVYTEE 60
Query: 61 TVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
TVRF+E ESA KALRK+S+R+L+ F+CFEFL++V FK
Sbjct: 61 TVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFK 81
BLAST of MS000313 vs. NCBI nr
Match:
KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0
Query: 1 MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYD-VGDIFFGRDDMKEFVWDGVFTE 60
MA P EFGG G DGG G+SCS + SKYD VGDIFFG+DDMKE+ WDG FTE
Sbjct: 1 MAIDTTPFEFGGDG---DGGRRCGKSCS---RPSKYDVVGDIFFGKDDMKEYAWDGAFTE 60
Query: 61 ETVRFLE 67
+TVRF+E
Sbjct: 61 KTVRFIE 61
BLAST of MS000313 vs. NCBI nr
Match:
KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0
Query: 1 MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYD-VGDIFFGRDDMKEFVWDGVFTE 60
MA P EFGG G DGG G+SCS + SKYD VGDIFFG+DDMKE+ WDG FTE
Sbjct: 1 MAIDTTPFEFGGDG---DGGRRCGKSCS---RPSKYDVVGDIFFGKDDMKEYAWDGAFTE 60
Query: 61 ETVRFLE 67
+TVRF+E
Sbjct: 61 KTVRFIE 61
BLAST of MS000313 vs. ExPASy TrEMBL
Match:
A0A0A0L658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 7.2e-23
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0
Query: 1 MARGILPCEFGGGG-GSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTE 60
MAR ILP EFGGGG G S+ G GDIFFG+DDMKE+ WDGV+TE
Sbjct: 1 MARDILPFEFGGGGAGESERG------------------GDIFFGKDDMKEYAWDGVYTE 60
Query: 61 ETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
ETVRF+E ESA KALRK+S+R+L+ F+CFEFLK+VWCFK
Sbjct: 61 ETVRFIETESAKKALRKRSRRKLEPFNCFEFLKIVWCFK 81
BLAST of MS000313 vs. ExPASy TrEMBL
Match:
A0A5D3DK72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00350 PE=4 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 0
Query: 1 MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTEE 60
MAR ILP EFGGGG GGES GD+FFG+DDMKE+ WDGV+TEE
Sbjct: 1 MARDILPFEFGGGG--------GGESERG---------GDVFFGKDDMKEYAWDGVYTEE 60
Query: 61 TVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
TVRF+E ESA KALRK+S+R+L+ F+CFEFL++V FK
Sbjct: 61 TVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFK 81
BLAST of MS000313 vs. ExPASy TrEMBL
Match:
A0A7J7DBE1 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW08G00189 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 6.1e-06
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0
Query: 1 MARGILPCE-----FGGGGGSSDGGLHGGESCSASNKKS--KYDVGDIFFGRDDMKEFVW 60
MARG+ C+ GG SS L S + KS YDVGD+FFG DD+ +
Sbjct: 1 MARGVTSCDEAGATAAGGNVSSSTALFEPTSDFRESSKSYMDYDVGDVFFGTDDLAD-TR 60
Query: 61 DGVFTEETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
D ++ E+ + R+ A+K ++++ KR +CFEFLKL+ C +
Sbjct: 61 DFLYKEDVIESYRRDRALKLVKRRDKRSSSIAECFEFLKLILCIR 104
BLAST of MS000313 vs. ExPASy TrEMBL
Match:
A0A5D2BXI7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D07G051300v1 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 0
Query: 1 MARGILPCEFGG------GGGSSDGGLHGGESCSASNKKS----------KYDVGDIFFG 60
MARGI + GG GGG GG + +S S S S + +GD+FFG
Sbjct: 1 MARGIPNYDDGGSFYDHTGGGGGSGGQYFTQSSSLSTSSSSDSLYHSSINRGTIGDVFFG 60
Query: 61 RDDMKEFVWDGVFTEETVRFLERESAMKALRKKSKRR-LQTFDCFEFLKLV 95
DD+++ D ++ E+ + ++E+A K LR++SK+R + F C EFLKL+
Sbjct: 61 TDDIRD-TRDLLYKEDVLESYQKETAQKYLRQRSKKRSISNFGCVEFLKLL 110
BLAST of MS000313 vs. ExPASy TrEMBL
Match:
A0A061FZA7 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014918 PE=4 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 0
Query: 1 MARGILPCEFGGGGGSSDGGLHGGE----SC--SASNKKSKYD-----------VGDIFF 60
MARGI P G G GG G + C SAS+ + D VGD+FF
Sbjct: 1 MARGI-PTYDGDGSSYDCGGGSGRQYITTQCYPSASSSFPRVDSFYYSSLNRGTVGDVFF 60
Query: 61 GRDDMKEFVWDGVFTEETVRFLERESAMKALRKKSKRR-LQTFDCFEFLKLVWC 97
G DD+++ D ++ E+ + RE+A+K+LR++SK+R + TF C EFLKL+ C
Sbjct: 61 GTDDIRD-TRDSMYKEDVMESYCRETAIKSLRRQSKKRSISTFGCVEFLKLLRC 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6576802.1 | 3.5e-24 | 67.35 | hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN57263.1 | 1.5e-22 | 61.62 | hypothetical protein Csa_009618 [Cucumis sativus] | [more] |
KAA0067665.1 | 5.3e-20 | 59.18 | hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669... | [more] |
KAG7030840.1 | 5.0e-10 | 62.69 | hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6600176.1 | 5.0e-10 | 62.69 | hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L658 | 7.2e-23 | 61.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1 | [more] |
A0A5D3DK72 | 2.6e-20 | 59.18 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A7J7DBE1 | 6.1e-06 | 36.19 | Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW08G00189 ... | [more] |
A0A5D2BXI7 | 2.0e-04 | 36.04 | Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D07G051300v1 PE=... | [more] |
A0A061FZA7 | 9.8e-04 | 38.60 | Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014918 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |