MS000313 (gene) Bitter gourd (TR) v1

Overview
NameMS000313
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold44: 836198 .. 836494 (-)
RNA-Seq ExpressionMS000313
SyntenyMS000313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAGGGATCCTCCCCTGCGAATTCGGTGGCGGCGGCGGCAGCAGCGACGGCGGCCTCCACGGCGGCGAGTCTTGCAGCGCTTCCAACAAAAAATCGAAGTACGACGTCGGAGACATTTTCTTCGGTAGGGATGATATGAAAGAATTCGTATGGGACGGTGTTTTCACTGAAGAAACAGTTCGATTTCTGGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAAGAAAAGCAAGAGAAGGCTACAAACATTTGATTGCTTCGAGTTCTTGAAACTCGTCTGGTGTTTCAAATTA

mRNA sequence

ATGGCCAGAGGGATCCTCCCCTGCGAATTCGGTGGCGGCGGCGGCAGCAGCGACGGCGGCCTCCACGGCGGCGAGTCTTGCAGCGCTTCCAACAAAAAATCGAAGTACGACGTCGGAGACATTTTCTTCGGTAGGGATGATATGAAAGAATTCGTATGGGACGGTGTTTTCACTGAAGAAACAGTTCGATTTCTGGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAAGAAAAGCAAGAGAAGGCTACAAACATTTGATTGCTTCGAGTTCTTGAAACTCGTCTGGTGTTTCAAATTA

Coding sequence (CDS)

ATGGCCAGAGGGATCCTCCCCTGCGAATTCGGTGGCGGCGGCGGCAGCAGCGACGGCGGCCTCCACGGCGGCGAGTCTTGCAGCGCTTCCAACAAAAAATCGAAGTACGACGTCGGAGACATTTTCTTCGGTAGGGATGATATGAAAGAATTCGTATGGGACGGTGTTTTCACTGAAGAAACAGTTCGATTTCTGGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAAGAAAAGCAAGAGAAGGCTACAAACATTTGATTGCTTCGAGTTCTTGAAACTCGTCTGGTGTTTCAAATTA

Protein sequence

MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTEETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFKL
Homology
BLAST of MS000313 vs. NCBI nr
Match: KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 3.5e-24
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 1  MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYD-VGDIFFGRDDMKEFVWDGVFTE 60
          MAR  LP EFG GG        GG+SCS+    SKYD VGDIFFG+DDMK +VWD VFTE
Sbjct: 1  MARDTLPYEFGVGG--------GGKSCSS---PSKYDVVGDIFFGKDDMKGYVWDEVFTE 60

Query: 61 ETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCF 98
          ETVRFLE ESA++ LRK+SKRRL+TF CFEFLK +WCF
Sbjct: 61 ETVRFLETESAVEVLRKRSKRRLETFKCFEFLKFLWCF 87

BLAST of MS000313 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 1  MARGILPCEFGGGG-GSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTE 60
          MAR ILP EFGGGG G S+ G                  GDIFFG+DDMKE+ WDGV+TE
Sbjct: 1  MARDILPFEFGGGGAGESERG------------------GDIFFGKDDMKEYAWDGVYTE 60

Query: 61 ETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
          ETVRF+E ESA KALRK+S+R+L+ F+CFEFLK+VWCFK
Sbjct: 61 ETVRFIETESAKKALRKRSRRKLEPFNCFEFLKIVWCFK 81

BLAST of MS000313 vs. NCBI nr
Match: KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 1  MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTEE 60
          MAR ILP EFGGGG        GGES            GD+FFG+DDMKE+ WDGV+TEE
Sbjct: 1  MARDILPFEFGGGG--------GGESERG---------GDVFFGKDDMKEYAWDGVYTEE 60

Query: 61 TVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
          TVRF+E ESA KALRK+S+R+L+ F+CFEFL++V  FK
Sbjct: 61 TVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFK 81

BLAST of MS000313 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYD-VGDIFFGRDDMKEFVWDGVFTE 60
          MA    P EFGG G   DGG   G+SCS   + SKYD VGDIFFG+DDMKE+ WDG FTE
Sbjct: 1  MAIDTTPFEFGGDG---DGGRRCGKSCS---RPSKYDVVGDIFFGKDDMKEYAWDGAFTE 60

Query: 61 ETVRFLE 67
          +TVRF+E
Sbjct: 61 KTVRFIE 61

BLAST of MS000313 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYD-VGDIFFGRDDMKEFVWDGVFTE 60
          MA    P EFGG G   DGG   G+SCS   + SKYD VGDIFFG+DDMKE+ WDG FTE
Sbjct: 1  MAIDTTPFEFGGDG---DGGRRCGKSCS---RPSKYDVVGDIFFGKDDMKEYAWDGAFTE 60

Query: 61 ETVRFLE 67
          +TVRF+E
Sbjct: 61 KTVRFIE 61

BLAST of MS000313 vs. ExPASy TrEMBL
Match: A0A0A0L658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.2e-23
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 1  MARGILPCEFGGGG-GSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTE 60
          MAR ILP EFGGGG G S+ G                  GDIFFG+DDMKE+ WDGV+TE
Sbjct: 1  MARDILPFEFGGGGAGESERG------------------GDIFFGKDDMKEYAWDGVYTE 60

Query: 61 ETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
          ETVRF+E ESA KALRK+S+R+L+ F+CFEFLK+VWCFK
Sbjct: 61 ETVRFIETESAKKALRKRSRRKLEPFNCFEFLKIVWCFK 81

BLAST of MS000313 vs. ExPASy TrEMBL
Match: A0A5D3DK72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00350 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 1  MARGILPCEFGGGGGSSDGGLHGGESCSASNKKSKYDVGDIFFGRDDMKEFVWDGVFTEE 60
          MAR ILP EFGGGG        GGES            GD+FFG+DDMKE+ WDGV+TEE
Sbjct: 1  MARDILPFEFGGGG--------GGESERG---------GDVFFGKDDMKEYAWDGVYTEE 60

Query: 61 TVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
          TVRF+E ESA KALRK+S+R+L+ F+CFEFL++V  FK
Sbjct: 61 TVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFK 81

BLAST of MS000313 vs. ExPASy TrEMBL
Match: A0A7J7DBE1 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW08G00189 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.1e-06
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 1   MARGILPCE-----FGGGGGSSDGGLHGGESCSASNKKS--KYDVGDIFFGRDDMKEFVW 60
           MARG+  C+       GG  SS   L    S    + KS   YDVGD+FFG DD+ +   
Sbjct: 1   MARGVTSCDEAGATAAGGNVSSSTALFEPTSDFRESSKSYMDYDVGDVFFGTDDLAD-TR 60

Query: 61  DGVFTEETVRFLERESAMKALRKKSKRRLQTFDCFEFLKLVWCFK 99
           D ++ E+ +    R+ A+K ++++ KR     +CFEFLKL+ C +
Sbjct: 61  DFLYKEDVIESYRRDRALKLVKRRDKRSSSIAECFEFLKLILCIR 104

BLAST of MS000313 vs. ExPASy TrEMBL
Match: A0A5D2BXI7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D07G051300v1 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 0

Query: 1   MARGILPCEFGG------GGGSSDGGLHGGESCSASNKKS----------KYDVGDIFFG 60
           MARGI   + GG      GGG   GG +  +S S S   S          +  +GD+FFG
Sbjct: 1   MARGIPNYDDGGSFYDHTGGGGGSGGQYFTQSSSLSTSSSSDSLYHSSINRGTIGDVFFG 60

Query: 61  RDDMKEFVWDGVFTEETVRFLERESAMKALRKKSKRR-LQTFDCFEFLKLV 95
            DD+++   D ++ E+ +   ++E+A K LR++SK+R +  F C EFLKL+
Sbjct: 61  TDDIRD-TRDLLYKEDVLESYQKETAQKYLRQRSKKRSISNFGCVEFLKLL 110

BLAST of MS000313 vs. ExPASy TrEMBL
Match: A0A061FZA7 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014918 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 0

Query: 1   MARGILPCEFGGGGGSSDGGLHGGE----SC--SASNKKSKYD-----------VGDIFF 60
           MARGI P   G G     GG  G +     C  SAS+   + D           VGD+FF
Sbjct: 1   MARGI-PTYDGDGSSYDCGGGSGRQYITTQCYPSASSSFPRVDSFYYSSLNRGTVGDVFF 60

Query: 61  GRDDMKEFVWDGVFTEETVRFLERESAMKALRKKSKRR-LQTFDCFEFLKLVWC 97
           G DD+++   D ++ E+ +    RE+A+K+LR++SK+R + TF C EFLKL+ C
Sbjct: 61  GTDDIRD-TRDSMYKEDVMESYCRETAIKSLRRQSKKRSISTFGCVEFLKLLRC 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6576802.13.5e-2467.35hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57263.11.5e-2261.62hypothetical protein Csa_009618 [Cucumis sativus][more]
KAA0067665.15.3e-2059.18hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669... [more]
KAG7030840.15.0e-1062.69hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600176.15.0e-1062.69hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6587.2e-2361.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1[more]
A0A5D3DK722.6e-2059.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7DBE16.1e-0636.19Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW08G00189 ... [more]
A0A5D2BXI72.0e-0436.04Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D07G051300v1 PE=... [more]
A0A061FZA79.8e-0438.60Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014918 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000313.1MS000313.1mRNA