Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGCTCTTTTCTCTTTCTCGCAACCTTGCATCAAGGCTTTCGAATTCCTTTCCTACTCCAACTCTCGACATTGTAAGAATTACGCTTCTTTTGCCACACCAGTGAGAACCCATAAAGTCACCTCTTTCCCTCATTCCTCACTCGCCCTCTTCAGGATCACTCCCGTTCACCAAGTTTTGCCGAGAAAATTTATGGGTTTTTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATATTTCAAATACCCTTTTCAGGAAGGGTCTAAAACAAATTGGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGGTAATGTGTTTATTCTTTTTCCAACTTTGGCTGTTTTATCAGAACAATTTAACTCCTTGCATGTATAAACGAATTCATACCTGAAGAACGTGAAGTCCTTTTGTGGCCAGAATTTCATTTCTCCATGGTGCATTCGGATTTTCCCAATTGTATTATCCTGTTGAAGTTTGCAAACGAAGAATAATTGTTATGCTGATACTGGAAATGGCATGAGGAAATTGTGAAAATCCTAACTTGGTTAAATCAGTTCAGCCACTTCAATTTCTTTGTACCCAATCAGCGCAGTTTCACTAAATATTATATGGGTTTTGTGTAAATATTAGAACACAGACGGTTATTATTTGATATTGGGAGTTCTTGAAATTTTTGGAGCCTGATTTTTAGAATTGTAGGGATAACATCATGATGTTTCATAGGACACTAGCATTATATTTTAGGTGTCTCCATGGCATATAGACTCTTACTGCTTGCTGTTATCATGGGTTACTTTAAGTTATATCATATAACATATCAAAATAATTTCATAACCTTCTACATTTGAATCGGCTTGGTGAATCTTTTAGTATTGAATACAATAAAACTGGTTACAATCCTTTTAACACCGGGGAGGATGCTTGGCATCTGATAAACAGAGTTGATTATTGGGGAAAGTTCTTATTTGATTGGATACGGGACTTTGTTCCTTTAACCTTACATACATTTTACTGATCACCTTCACTTTCGAACATCAACACACTTATTAGAACTTGAATCATCATTGGTGATCACTTAGGGCACGAGTGGAGCCGTAAATTCTGTCATATTGCTTCATATATTCTTCTTCCCAAATTTGACTCTCAGTATGTAATTCTTTAGACCTGTTCTTGCCATCTTACTAGTATGCACAACTCTAAACAGCACAAAGATTCACAGTTCACTATGAAAAATCCTGAAAGAGTCCTTGTTGGTTTCATTACATAGCAGTTTTATCATTGGAATGGGCATGTTGAGGCCTACTAGAGGTACGATGTTTACTAAACTTTTCTATCCAACTCCATGTTGAATTCTCTTCTCTGTCACATATAGCTGACCTCCTCCTGTTAGGTAAATTCATAAAATTTGTATGTTCTCTGCAGAATGACAACCAAATTTCAAGATCTATCCACTTGTGGGGTATTGCATTTCCAACCTCCATCCGTGCCCTTCTCTGAATATCGGAAGAACTTTCGTACTCGAAACTGTGTTTGATGCAATAATACTCACCAACTTCTTTCTTAACCCTCTCACTCTACGAAAGATCTTTCAATCGGTTTAATACATTTACATTTCATTACATACATGATTTGTTGATTTGACACTATGATAGTTAGTTACCATATGTCACACTGCCTAATGGCAATCCATTGAGGGACAATTTGGCAGATCTCTATATCCACATGAATCACATTAATACAGCATACTATTTCCTTGAAATTTCTATTCCATGTGTGTTCACCTTTTTGTATTCAAATTTGTATTAGATGCAAAATGTGACAAAAGCAAATGTAAATAAGGGACCATTATTAGAACCTGTTTGGAAACACAGAGAAGCTCATTCACTACTGGGATTAAATTTTAGACTGGATAAGCCGAGAGTGGACAACAGTTGA
mRNA sequence
ATGAACAAGCTCTTTTCTCTTTCTCGCAACCTTGCATCAAGGCTTTCGAATTCCTTTCCTACTCCAACTCTCGACATTGATCACTCCCGTTCACCAAGTTTTGCCGAGAAAATTTATGGGTTTTTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATATTTCAAATACCCTTTTCAGGAAGGGTCTAAAACAAATTGGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGAATGACAACCAAATTTCAAGATCTATCCACTTGTGGGGTATTGCATTTCCAACCTCCATCCGTGCCCTTCTCTGAATATCGGAAGAACTTTCGTACTCGAAACTGTATGCAAAATGTGACAAAAGCAAATGTAAATAAGGGACCATTATTAGAACCTGTTTGGAAACACAGAGAAGCTCATTCACTACTGGGATTAAATTTTAGACTGGATAAGCCGAGAGTGGACAACAGTTGA
Coding sequence (CDS)
ATGAACAAGCTCTTTTCTCTTTCTCGCAACCTTGCATCAAGGCTTTCGAATTCCTTTCCTACTCCAACTCTCGACATTGATCACTCCCGTTCACCAAGTTTTGCCGAGAAAATTTATGGGTTTTTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATATTTCAAATACCCTTTTCAGGAAGGGTCTAAAACAAATTGGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGAATGACAACCAAATTTCAAGATCTATCCACTTGTGGGGTATTGCATTTCCAACCTCCATCCGTGCCCTTCTCTGAATATCGGAAGAACTTTCGTACTCGAAACTGTATGCAAAATGTGACAAAAGCAAATGTAAATAAGGGACCATTATTAGAACCTGTTTGGAAACACAGAGAAGCTCATTCACTACTGGGATTAAATTTTAGACTGGATAAGCCGAGAGTGGACAACAGTTGA
Protein sequence
MNKLFSLSRNLASRLSNSFPTPTLDIDHSRSPSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGSELKLAFDHQWGGRMTTKFQDLSTCGVLHFQPPSVPFSEYRKNFRTRNCMQNVTKANVNKGPLLEPVWKHREAHSLLGLNFRLDKPRVDNS
Homology
BLAST of MELO3C035765 vs. NCBI nr
Match:
KGN64066.1 (hypothetical protein Csa_013348 [Cucumis sativus])
HSP 1 Score: 148.3 bits (373), Expect = 5.7e-32
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTPTLDIDHSRS----PSFAEKIYGFFSVPAAGKRFIFNIS 60
MN+LFSLSR LASRLSNSFPTPTLDIDHSRS PSFAEKIYGF SVPAAGKRFIFN S
Sbjct: 1 MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60
Query: 61 NTLFRKGLKQIGSELKLAFDHQWGGRMTTK 87
NTLFRK L+QI SELKLAFDHQWGG + TK
Sbjct: 61 NTLFRKSLEQIRSELKLAFDHQWGGSLQTK 90
BLAST of MELO3C035765 vs. NCBI nr
Match:
XP_023519071.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo])
HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 59/141 (41.84%), Postives = 67/141 (47.52%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSN------------SFPTPTLD---------------IDHSRS-- 60
MNK F SR LASRLSN SF T L DHSRS
Sbjct: 1 MNKFF--SRKLASRLSNSYGNSHYCRDCASFSTQVLTGNQNYFYGSFITRPVKDHSRSWS 60
Query: 61 --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
SF EKI+GFFS P GKRFI N SNTLF+ +K + GS +LK F
Sbjct: 61 SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120
BLAST of MELO3C035765 vs. NCBI nr
Match:
XP_022923619.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata])
HSP 1 Score: 69.7 bits (169), Expect = 2.6e-08
Identity = 57/141 (40.43%), Postives = 68/141 (48.23%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
MNK+F SR LASRLSNS+ T + DHSRS
Sbjct: 1 MNKIF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60
Query: 61 --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
SF EKI+GFFS P GKRFI N SNTLF+ +K + GS +LK F
Sbjct: 61 SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120
BLAST of MELO3C035765 vs. NCBI nr
Match:
KAG7019987.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 68.2 bits (165), Expect = 7.5e-08
Identity = 57/141 (40.43%), Postives = 67/141 (47.52%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
MNK F SR LASRLSNS+ T + DHSRS
Sbjct: 1 MNKFF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60
Query: 61 --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
SF EKI+GFFS P GKRFI N SNTLF+ +K + GS +LK F
Sbjct: 61 SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120
BLAST of MELO3C035765 vs. NCBI nr
Match:
XP_004137444.1 (RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetical protein Csa_013374 [Cucumis sativus])
HSP 1 Score: 68.2 bits (165), Expect = 7.5e-08
Identity = 52/129 (40.31%), Postives = 60/129 (46.51%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTPTLDI----------------------------DHSRS- 60
MNKLF SR L SRLSNS+ +LD DHSRS
Sbjct: 1 MNKLF--SRKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60
Query: 61 ---PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGS---------------ELKL 83
SFA+KI+GFFSVP GKRFI N SNT F+ +K + +LK
Sbjct: 61 SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match:
A0A0A0LVM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039310 PE=4 SV=1)
HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTPTLDIDHSRS----PSFAEKIYGFFSVPAAGKRFIFNIS 60
MN+LFSLSR LASRLSNSFPTPTLDIDHSRS PSFAEKIYGF SVPAAGKRFIFN S
Sbjct: 1 MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60
Query: 61 NTLFRKGLKQIGSELKLAFDHQWGGRMTTK 87
NTLFRK L+QI SELKLAFDHQWGG + TK
Sbjct: 61 NTLFRKSLEQIRSELKLAFDHQWGGSLQTK 90
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match:
A0A6J1E6X7 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431274 PE=3 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 57/141 (40.43%), Postives = 68/141 (48.23%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
MNK+F SR LASRLSNS+ T + DHSRS
Sbjct: 1 MNKIF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60
Query: 61 --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
SF EKI+GFFS P GKRFI N SNTLF+ +K + GS +LK F
Sbjct: 61 SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match:
A0A0A0LTI7 (Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE=3 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 52/129 (40.31%), Postives = 60/129 (46.51%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTPTLDI----------------------------DHSRS- 60
MNKLF SR L SRLSNS+ +LD DHSRS
Sbjct: 1 MNKLF--SRKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60
Query: 61 ---PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGS---------------ELKL 83
SFA+KI+GFFSVP GKRFI N SNT F+ +K + +LK
Sbjct: 61 SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match:
A0A6J1KPT4 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495401 PE=3 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 55/141 (39.01%), Postives = 66/141 (46.81%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
MNK F SR LASRLSNS+ T + DHSRS
Sbjct: 1 MNKFF--SRKLASRLSNSYGNSHYCRDCASFATQVRTSNQNYFYGSFITRPVKDHSRSWS 60
Query: 61 --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
S EKI+GFFS P GKRFI N S+TLF+ +K + GS +LK F
Sbjct: 61 SHRSCTEKIHGFFSGPVVGKRFILNPSSTLFKGSIKSLVERSLFMGSPFSKLKFQLKPGF 120
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match:
A0A5D3BLA0 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001490 PE=3 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 51/129 (39.53%), Postives = 58/129 (44.96%), Query Frame = 0
Query: 1 MNKLFSLSRNLASRLSN----------------------------SFPTPTLDIDHSRS- 60
MNKLF SR LASRLSN SF T L DHSRS
Sbjct: 1 MNKLF--SRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQ-DHSRSW 60
Query: 61 ---PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGS---------------ELKL 83
SF +KI+GFFSVP GKR + N SNT F+ +K + +LK
Sbjct: 61 SSHRSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN64066.1 | 5.7e-32 | 84.44 | hypothetical protein Csa_013348 [Cucumis sativus] | [more] |
| XP_023519071.1 | 1.5e-08 | 41.84 | RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo] | [more] |
| XP_022923619.1 | 2.6e-08 | 40.43 | RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata] | [more] |
| KAG7019987.1 | 7.5e-08 | 40.43 | RHOMBOID-like protein 12, mitochondrial [Cucurbita argyrosperma subsp. argyrospe... | [more] |
| XP_004137444.1 | 7.5e-08 | 40.31 | RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetic... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LVM8 | 2.7e-32 | 84.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039310 PE=4 SV=1 | [more] |
| A0A6J1E6X7 | 1.2e-08 | 40.43 | RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114... | [more] |
| A0A0A0LTI7 | 3.6e-08 | 40.31 | Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE... | [more] |
| A0A6J1KPT4 | 1.2e-06 | 39.01 | RHOMBOID-like protein 12, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495... | [more] |
| A0A5D3BLA0 | 1.2e-06 | 39.53 | RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
