MELO3C035765 (gene) Melon (DHL92) v4

Overview
NameMELO3C035765
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRHOMBOID-like protein 12, mitochondrial
Locationchr12: 25314509 .. 25316463 (+)
RNA-Seq ExpressionMELO3C035765
SyntenyMELO3C035765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGCTCTTTTCTCTTTCTCGCAACCTTGCATCAAGGCTTTCGAATTCCTTTCCTACTCCAACTCTCGACATTGTAAGAATTACGCTTCTTTTGCCACACCAGTGAGAACCCATAAAGTCACCTCTTTCCCTCATTCCTCACTCGCCCTCTTCAGGATCACTCCCGTTCACCAAGTTTTGCCGAGAAAATTTATGGGTTTTTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATATTTCAAATACCCTTTTCAGGAAGGGTCTAAAACAAATTGGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGGTAATGTGTTTATTCTTTTTCCAACTTTGGCTGTTTTATCAGAACAATTTAACTCCTTGCATGTATAAACGAATTCATACCTGAAGAACGTGAAGTCCTTTTGTGGCCAGAATTTCATTTCTCCATGGTGCATTCGGATTTTCCCAATTGTATTATCCTGTTGAAGTTTGCAAACGAAGAATAATTGTTATGCTGATACTGGAAATGGCATGAGGAAATTGTGAAAATCCTAACTTGGTTAAATCAGTTCAGCCACTTCAATTTCTTTGTACCCAATCAGCGCAGTTTCACTAAATATTATATGGGTTTTGTGTAAATATTAGAACACAGACGGTTATTATTTGATATTGGGAGTTCTTGAAATTTTTGGAGCCTGATTTTTAGAATTGTAGGGATAACATCATGATGTTTCATAGGACACTAGCATTATATTTTAGGTGTCTCCATGGCATATAGACTCTTACTGCTTGCTGTTATCATGGGTTACTTTAAGTTATATCATATAACATATCAAAATAATTTCATAACCTTCTACATTTGAATCGGCTTGGTGAATCTTTTAGTATTGAATACAATAAAACTGGTTACAATCCTTTTAACACCGGGGAGGATGCTTGGCATCTGATAAACAGAGTTGATTATTGGGGAAAGTTCTTATTTGATTGGATACGGGACTTTGTTCCTTTAACCTTACATACATTTTACTGATCACCTTCACTTTCGAACATCAACACACTTATTAGAACTTGAATCATCATTGGTGATCACTTAGGGCACGAGTGGAGCCGTAAATTCTGTCATATTGCTTCATATATTCTTCTTCCCAAATTTGACTCTCAGTATGTAATTCTTTAGACCTGTTCTTGCCATCTTACTAGTATGCACAACTCTAAACAGCACAAAGATTCACAGTTCACTATGAAAAATCCTGAAAGAGTCCTTGTTGGTTTCATTACATAGCAGTTTTATCATTGGAATGGGCATGTTGAGGCCTACTAGAGGTACGATGTTTACTAAACTTTTCTATCCAACTCCATGTTGAATTCTCTTCTCTGTCACATATAGCTGACCTCCTCCTGTTAGGTAAATTCATAAAATTTGTATGTTCTCTGCAGAATGACAACCAAATTTCAAGATCTATCCACTTGTGGGGTATTGCATTTCCAACCTCCATCCGTGCCCTTCTCTGAATATCGGAAGAACTTTCGTACTCGAAACTGTGTTTGATGCAATAATACTCACCAACTTCTTTCTTAACCCTCTCACTCTACGAAAGATCTTTCAATCGGTTTAATACATTTACATTTCATTACATACATGATTTGTTGATTTGACACTATGATAGTTAGTTACCATATGTCACACTGCCTAATGGCAATCCATTGAGGGACAATTTGGCAGATCTCTATATCCACATGAATCACATTAATACAGCATACTATTTCCTTGAAATTTCTATTCCATGTGTGTTCACCTTTTTGTATTCAAATTTGTATTAGATGCAAAATGTGACAAAAGCAAATGTAAATAAGGGACCATTATTAGAACCTGTTTGGAAACACAGAGAAGCTCATTCACTACTGGGATTAAATTTTAGACTGGATAAGCCGAGAGTGGACAACAGTTGA

mRNA sequence

ATGAACAAGCTCTTTTCTCTTTCTCGCAACCTTGCATCAAGGCTTTCGAATTCCTTTCCTACTCCAACTCTCGACATTGATCACTCCCGTTCACCAAGTTTTGCCGAGAAAATTTATGGGTTTTTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATATTTCAAATACCCTTTTCAGGAAGGGTCTAAAACAAATTGGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGAATGACAACCAAATTTCAAGATCTATCCACTTGTGGGGTATTGCATTTCCAACCTCCATCCGTGCCCTTCTCTGAATATCGGAAGAACTTTCGTACTCGAAACTGTATGCAAAATGTGACAAAAGCAAATGTAAATAAGGGACCATTATTAGAACCTGTTTGGAAACACAGAGAAGCTCATTCACTACTGGGATTAAATTTTAGACTGGATAAGCCGAGAGTGGACAACAGTTGA

Coding sequence (CDS)

ATGAACAAGCTCTTTTCTCTTTCTCGCAACCTTGCATCAAGGCTTTCGAATTCCTTTCCTACTCCAACTCTCGACATTGATCACTCCCGTTCACCAAGTTTTGCCGAGAAAATTTATGGGTTTTTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATATTTCAAATACCCTTTTCAGGAAGGGTCTAAAACAAATTGGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGAATGACAACCAAATTTCAAGATCTATCCACTTGTGGGGTATTGCATTTCCAACCTCCATCCGTGCCCTTCTCTGAATATCGGAAGAACTTTCGTACTCGAAACTGTATGCAAAATGTGACAAAAGCAAATGTAAATAAGGGACCATTATTAGAACCTGTTTGGAAACACAGAGAAGCTCATTCACTACTGGGATTAAATTTTAGACTGGATAAGCCGAGAGTGGACAACAGTTGA

Protein sequence

MNKLFSLSRNLASRLSNSFPTPTLDIDHSRSPSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGSELKLAFDHQWGGRMTTKFQDLSTCGVLHFQPPSVPFSEYRKNFRTRNCMQNVTKANVNKGPLLEPVWKHREAHSLLGLNFRLDKPRVDNS
Homology
[Close]
BLAST of MELO3C035765 vs. NCBI nr
Match: KGN64066.1 (hypothetical protein Csa_013348 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.7e-32
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 0 

Query: 1  MNKLFSLSRNLASRLSNSFPTPTLDIDHSRS----PSFAEKIYGFFSVPAAGKRFIFNIS 60
          MN+LFSLSR LASRLSNSFPTPTLDIDHSRS    PSFAEKIYGF SVPAAGKRFIFN S
Sbjct: 1  MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60

Query: 61 NTLFRKGLKQIGSELKLAFDHQWGGRMTTK 87
          NTLFRK L+QI SELKLAFDHQWGG + TK
Sbjct: 61 NTLFRKSLEQIRSELKLAFDHQWGGSLQTK 90

[Close]
BLAST of MELO3C035765 vs. NCBI nr
Match: XP_023519071.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 59/141 (41.84%), Postives = 67/141 (47.52%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSN------------SFPTPTLD---------------IDHSRS-- 60
           MNK F  SR LASRLSN            SF T  L                 DHSRS  
Sbjct: 1   MNKFF--SRKLASRLSNSYGNSHYCRDCASFSTQVLTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
              SF EKI+GFFS P  GKRFI N SNTLF+  +K +       GS       +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of MELO3C035765 vs. NCBI nr
Match: XP_022923619.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-08
Identity = 57/141 (40.43%), Postives = 68/141 (48.23%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
           MNK+F  SR LASRLSNS+                             T  + DHSRS  
Sbjct: 1   MNKIF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
              SF EKI+GFFS P  GKRFI N SNTLF+  +K +       GS       +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of MELO3C035765 vs. NCBI nr
Match: KAG7019987.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-08
Identity = 57/141 (40.43%), Postives = 67/141 (47.52%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
           MNK F  SR LASRLSNS+                             T  + DHSRS  
Sbjct: 1   MNKFF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
              SF EKI+GFFS P  GKRFI N SNTLF+  +K +       GS       +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of MELO3C035765 vs. NCBI nr
Match: XP_004137444.1 (RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetical protein Csa_013374 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-08
Identity = 52/129 (40.31%), Postives = 60/129 (46.51%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSNSFPTPTLDI----------------------------DHSRS- 60
           MNKLF  SR L SRLSNS+   +LD                             DHSRS 
Sbjct: 1   MNKLF--SRKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60

Query: 61  ---PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGS---------------ELKL 83
               SFA+KI+GFFSVP  GKRFI N SNT F+  +K +                 +LK 
Sbjct: 61  SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match: A0A0A0LVM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039310 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 0 

Query: 1  MNKLFSLSRNLASRLSNSFPTPTLDIDHSRS----PSFAEKIYGFFSVPAAGKRFIFNIS 60
          MN+LFSLSR LASRLSNSFPTPTLDIDHSRS    PSFAEKIYGF SVPAAGKRFIFN S
Sbjct: 1  MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60

Query: 61 NTLFRKGLKQIGSELKLAFDHQWGGRMTTK 87
          NTLFRK L+QI SELKLAFDHQWGG + TK
Sbjct: 61 NTLFRKSLEQIRSELKLAFDHQWGGSLQTK 90

[Close]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match: A0A6J1E6X7 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431274 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 57/141 (40.43%), Postives = 68/141 (48.23%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
           MNK+F  SR LASRLSNS+                             T  + DHSRS  
Sbjct: 1   MNKIF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
              SF EKI+GFFS P  GKRFI N SNTLF+  +K +       GS       +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match: A0A0A0LTI7 (Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 52/129 (40.31%), Postives = 60/129 (46.51%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSNSFPTPTLDI----------------------------DHSRS- 60
           MNKLF  SR L SRLSNS+   +LD                             DHSRS 
Sbjct: 1   MNKLF--SRKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60

Query: 61  ---PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGS---------------ELKL 83
               SFA+KI+GFFSVP  GKRFI N SNT F+  +K +                 +LK 
Sbjct: 61  SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match: A0A6J1KPT4 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495401 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 55/141 (39.01%), Postives = 66/141 (46.81%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSNSFPTP--------------------------TLDI-DHSRS-- 60
           MNK F  SR LASRLSNS+                             T  + DHSRS  
Sbjct: 1   MNKFF--SRKLASRLSNSYGNSHYCRDCASFATQVRTSNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  --PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQI-------GS-------ELKLAF 97
              S  EKI+GFFS P  GKRFI N S+TLF+  +K +       GS       +LK  F
Sbjct: 61  SHRSCTEKIHGFFSGPVVGKRFILNPSSTLFKGSIKSLVERSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match: A0A5D3BLA0 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001490 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 51/129 (39.53%), Postives = 58/129 (44.96%), Query Frame = 0 

Query: 1   MNKLFSLSRNLASRLSN----------------------------SFPTPTLDIDHSRS- 60
           MNKLF  SR LASRLSN                            SF T  L  DHSRS 
Sbjct: 1   MNKLF--SRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQ-DHSRSW 60

Query: 61  ---PSFAEKIYGFFSVPAAGKRFIFNISNTLFRKGLKQIGS---------------ELKL 83
               SF +KI+GFFSVP  GKR + N SNT F+  +K +                 +LK 
Sbjct: 61  SSHRSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

The following BLAST results are available for this feature:
BLAST of MELO3C035765 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035765 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64066.15.7e-3284.44hypothetical protein Csa_013348 [Cucumis sativus][more]
XP_023519071.11.5e-0841.84RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022923619.12.6e-0840.43RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata][more]
KAG7019987.17.5e-0840.43RHOMBOID-like protein 12, mitochondrial [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_004137444.17.5e-0840.31RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetic... [more]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVM82.7e-3284.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039310 PE=4 SV=1[more]
A0A6J1E6X71.2e-0840.43RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A0A0LTI73.6e-0840.31Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE... [more]
A0A6J1KPT41.2e-0639.01RHOMBOID-like protein 12, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495... [more]
A0A5D3BLA01.2e-0639.53RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of MELO3C035765 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035765.1MELO3C035765.1mRNA