Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGGTACGAATAATTATTGATCTTTTATTTTCTCTATAATCTCCTTTCTCTAAATTTCTATCAACACTTCCATATTGATCCTCTGAATGTTTTCACTCCTCCATTTTTTAAAAACAATTTTTTTTAGATTTCAAAGGTTTCAGATGCGAACTACGTACAGGTGGAGCATCGCTAAGGTAGGCTATCTATAAAACTTATACTAATTTTCAAACTGGGTGATTGGGTTTGTGTGCATTAAGCAAGGAGTAATTTCCATCTCAAAGGAAAACCAAGTTACATCAAAGAGGGGATGGGTCTTTCCAAGTTCTTGAAAAAGTTAACAATAATGTATATATGATTAACCTTCCAGGAGAATATTTAGTAAGTTCTACTTTCAATATTGTTCACTTGAGTCCTTTTGATGTAGGTGATGAATTTCTTGATACGAGAATGAATCCTTTCGAAGAGGGAAAAATGATAGAAGGACCAATTACAAGATCTAACATCAAAGATTTAACAATCATTCATTCTCCATGTACAGAAATGGATAGGATCAATTCACCCTTAATTTCATGAGCCACATACTAATACAAGAGACGAAGGACCACTTGGAGTATTAAATGTCAATGTTTTCTTAGTTGAAGCGGACTATGGGATAGACATTAAGCTTCCATGAATCCAACATTTTGAAGACCTCATGTTTTAGTTAATATCACATTTTTATTGAATTTTCTATTCTTTTAATTTGACAAGTTAGGGTAACTACCATTAATAAGTCAGTATTAAAGATGGTGGTTGAAAGATAGAAAACTCATTTAATGTTTTATTTTCACTTTTTGGTATTTTCATTAATAGGACAAGATCTCTAAAGGCTATATAATGCCTTTATACTTTCATTTGTAAGAACAAAACTTTTGATGAATGCAATTTGAAATGTCATTTTGGGACTTTTTCCTTATTTGTTTTTGCAATTCTTGTGATAGAATGCATGTGAGCCATTTAATCTAACCTTGATCAAGTTTTATTGTGGAGTGACTCAATTAAAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTGTTTGTAAAGTTCTAAAAGACTTTTTCAGAGGTAACAATGAAGTTTTCTACATCTGTTTTCATGACTTCAAACATATTTTTTCATGAACTTTGTTTGATCCAAGAAATAAGTTGTGATATTCGTTGTATGAGAATGTATTATTGAGTTAGATGACATTAAGCATGCAGAAAAAATTCAACAAGTATTGGGGTGTAACTACAAGTGAGAAGAGAAGACCAATTTATTATTATATGTTTCTGTAGTTCTTGACCCTAGGTACAAGCTAGCTTATGTGAATTATTGCTTTAATGAATTTTTGGATGAAGATTGTGCAAAAAAAAAAAAAAAGGACGAATAAGGTTGAAGAAGCATTTTTTTCGATCGTGTGATGATTATTATATGAGAACGTCAAAAGAAAAATATTCACAAACACAATCATGTACACCTATCAAAGGATTTGGCTTTCAAAGTCAAAGTGAAGTACCTTCAATCTCATCTAGTGGATCTTGTAAGGCACGTGCTACAATTCATGATAGATTTAAAAAAAAGTAACAAAACATGTCTAGATGATGCTAAAATAGAGGTGGTTTGTTATCTAGATGAGGCTCGTATAGAAGATGAATATTTAAATTAGCTAAATTGGTTGAAGATGAATTCTTCTCGATTTAAGATCATTAGCCAAGTAGCCAAGGAAATCTATAGTATTCTTATATCAACTGTGCATTCTAAGTCAGCCTTTAGCACTGAAGGATGGGTGTTAGATCTTTTTGAAGATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGTAATATTCTATTTGAAGTATGTATTTAAAAATTTTAAATTATCCCATATAAGCTAACAATTTTGTCATTTCTATCTAGAATTCATAAACATAGGAAAGGAGATGGAAGCTGCATTTGAGAATCGAAATAATGACTCTATGGTCTAAATCCCTATTCTCAAATCTTTATTTACATTTTTTTGTTTTAAATTCTTAACTTGTTAAATATTGAATCTTGTTTTTTTAGAGTCTTGAAGCATAGTGATGGAAGCAATTGTAGGCAAAAGAAAATTTCATGTATGATTTATGTAAATTGAGAATACCTTTTTTTTTTTTTTGTGATTTTCCTCTAATAGTGTTGAATCTTCATGTTCTTTATATTTTGGAGTTTGGTTGATAATTTCTGTATTTTATTGATCAAAACCTGTAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGA
mRNA sequence
ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGA
Coding sequence (CDS)
ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGA
Protein sequence
MFNSPRYFFLGVTLLELIAHSRGFWVYAKMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVIDNMENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEHQRGRRLIYMWMIMGG
Homology
BLAST of MELO3C035641 vs. NCBI nr
Match:
TYK14792.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])
HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LEDHDPSYL KDDIP ED DNA+V
Sbjct: 19 KCQKTFERLEDHDPSYLPKDDIPIAEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79 SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138
BLAST of MELO3C035641 vs. NCBI nr
Match:
KAA0038191.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])
HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LEDHDPSYL KDDIP ED DNA+V
Sbjct: 19 KCQKTFERLEDHDPSYLPKDDIPIVEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79 SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138
BLAST of MELO3C035641 vs. NCBI nr
Match:
KAA0051411.1 (putative transposase [Cucumis melo var. makuwa])
HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 55/122 (45.08%), Postives = 60/122 (49.18%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LE HDPSYL KDDIPTTED DNA+V
Sbjct: 162 KCQKTFERLEVHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID A+EI
Sbjct: 222 SIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGADEI 281
BLAST of MELO3C035641 vs. NCBI nr
Match:
KAA0068065.1 (putative transposase [Cucumis melo var. makuwa] >TYK26049.1 putative transposase [Cucumis melo var. makuwa])
HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 54/122 (44.26%), Postives = 60/122 (49.18%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LE+HDPSYL KDDIPTTED +NA+V
Sbjct: 162 KCQKTFERLEEHDPSYLPKDDIPTTEDWENAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID EEI
Sbjct: 222 SIPISTVTSESAFSAGGQVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGTEEI 281
BLAST of MELO3C035641 vs. NCBI nr
Match:
KAA0038333.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 54/122 (44.26%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LE+HDPSYL KDDIPTTED DNA+V
Sbjct: 19 KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKAFSEVNSSRFKIISQVARDIY 78
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ LICVQN IQ KPLDDM EEID EEI
Sbjct: 79 SIPISTVPSESAFSTEGRVLDSFRSSLTPQTAEVLICVQNWIQFKPLDDMTEEIDGTEEI 138
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match:
A0A5A7T979 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00230 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 6.3e-13
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LEDHDPSYL KDDIP ED DNA+V
Sbjct: 19 KCQKTFERLEDHDPSYLPKDDIPIVEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79 SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match:
A0A5D3CTM4 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00330 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 6.3e-13
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LEDHDPSYL KDDIP ED DNA+V
Sbjct: 19 KCQKTFERLEDHDPSYLPKDDIPIAEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79 SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match:
A0A5D3DRN1 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00020 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 54/122 (44.26%), Postives = 60/122 (49.18%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LE+HDPSYL KDDIPTTED +NA+V
Sbjct: 162 KCQKTFERLEEHDPSYLPKDDIPTTEDWENAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID EEI
Sbjct: 222 SIPISTVTSESAFSAGGQVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGTEEI 281
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match:
A0A5A7UCY2 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001540 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 55/122 (45.08%), Postives = 60/122 (49.18%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LE HDPSYL KDDIPTTED DNA+V
Sbjct: 162 KCQKTFERLEVHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ALIC QN IQSKPLDDM EEID A+EI
Sbjct: 222 SIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGADEI 281
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match:
A0A5A7T5X1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002070 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 54/122 (44.26%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
K + TFE+LE+HDPSYL KDDIPTTED DNA+V
Sbjct: 19 KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKAFSEVNSSRFKIISQVARDIY 78
Query: 89 -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
SLTPQ A+ LICVQN IQ KPLDDM EEID EEI
Sbjct: 79 SIPISTVPSESAFSTEGRVLDSFRSSLTPQTAEVLICVQNWIQFKPLDDMTEEIDGTEEI 138
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| TYK14792.1 | 1.3e-12 | 45.08 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... | [more] |
| KAA0038191.1 | 1.3e-12 | 45.08 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... | [more] |
| KAA0051411.1 | 1.7e-12 | 45.08 | putative transposase [Cucumis melo var. makuwa] | [more] |
| KAA0068065.1 | 1.7e-12 | 44.26 | putative transposase [Cucumis melo var. makuwa] >TYK26049.1 putative transposase... | [more] |
| KAA0038333.1 | 2.9e-12 | 44.26 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T979 | 6.3e-13 | 45.08 | Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... | [more] |
| A0A5D3CTM4 | 6.3e-13 | 45.08 | Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... | [more] |
| A0A5D3DRN1 | 8.2e-13 | 44.26 | Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118... | [more] |
| A0A5A7UCY2 | 8.2e-13 | 45.08 | Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G... | [more] |
| A0A5A7T5X1 | 1.4e-12 | 44.26 | Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
