MELO3C035641 (gene) Melon (DHL92) v4

Overview
NameMELO3C035641
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3
Locationchr12: 15136078 .. 15138733 (-)
RNA-Seq ExpressionMELO3C035641
SyntenyMELO3C035641
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGGTACGAATAATTATTGATCTTTTATTTTCTCTATAATCTCCTTTCTCTAAATTTCTATCAACACTTCCATATTGATCCTCTGAATGTTTTCACTCCTCCATTTTTTAAAAACAATTTTTTTTAGATTTCAAAGGTTTCAGATGCGAACTACGTACAGGTGGAGCATCGCTAAGGTAGGCTATCTATAAAACTTATACTAATTTTCAAACTGGGTGATTGGGTTTGTGTGCATTAAGCAAGGAGTAATTTCCATCTCAAAGGAAAACCAAGTTACATCAAAGAGGGGATGGGTCTTTCCAAGTTCTTGAAAAAGTTAACAATAATGTATATATGATTAACCTTCCAGGAGAATATTTAGTAAGTTCTACTTTCAATATTGTTCACTTGAGTCCTTTTGATGTAGGTGATGAATTTCTTGATACGAGAATGAATCCTTTCGAAGAGGGAAAAATGATAGAAGGACCAATTACAAGATCTAACATCAAAGATTTAACAATCATTCATTCTCCATGTACAGAAATGGATAGGATCAATTCACCCTTAATTTCATGAGCCACATACTAATACAAGAGACGAAGGACCACTTGGAGTATTAAATGTCAATGTTTTCTTAGTTGAAGCGGACTATGGGATAGACATTAAGCTTCCATGAATCCAACATTTTGAAGACCTCATGTTTTAGTTAATATCACATTTTTATTGAATTTTCTATTCTTTTAATTTGACAAGTTAGGGTAACTACCATTAATAAGTCAGTATTAAAGATGGTGGTTGAAAGATAGAAAACTCATTTAATGTTTTATTTTCACTTTTTGGTATTTTCATTAATAGGACAAGATCTCTAAAGGCTATATAATGCCTTTATACTTTCATTTGTAAGAACAAAACTTTTGATGAATGCAATTTGAAATGTCATTTTGGGACTTTTTCCTTATTTGTTTTTGCAATTCTTGTGATAGAATGCATGTGAGCCATTTAATCTAACCTTGATCAAGTTTTATTGTGGAGTGACTCAATTAAAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTGTTTGTAAAGTTCTAAAAGACTTTTTCAGAGGTAACAATGAAGTTTTCTACATCTGTTTTCATGACTTCAAACATATTTTTTCATGAACTTTGTTTGATCCAAGAAATAAGTTGTGATATTCGTTGTATGAGAATGTATTATTGAGTTAGATGACATTAAGCATGCAGAAAAAATTCAACAAGTATTGGGGTGTAACTACAAGTGAGAAGAGAAGACCAATTTATTATTATATGTTTCTGTAGTTCTTGACCCTAGGTACAAGCTAGCTTATGTGAATTATTGCTTTAATGAATTTTTGGATGAAGATTGTGCAAAAAAAAAAAAAAAGGACGAATAAGGTTGAAGAAGCATTTTTTTCGATCGTGTGATGATTATTATATGAGAACGTCAAAAGAAAAATATTCACAAACACAATCATGTACACCTATCAAAGGATTTGGCTTTCAAAGTCAAAGTGAAGTACCTTCAATCTCATCTAGTGGATCTTGTAAGGCACGTGCTACAATTCATGATAGATTTAAAAAAAAGTAACAAAACATGTCTAGATGATGCTAAAATAGAGGTGGTTTGTTATCTAGATGAGGCTCGTATAGAAGATGAATATTTAAATTAGCTAAATTGGTTGAAGATGAATTCTTCTCGATTTAAGATCATTAGCCAAGTAGCCAAGGAAATCTATAGTATTCTTATATCAACTGTGCATTCTAAGTCAGCCTTTAGCACTGAAGGATGGGTGTTAGATCTTTTTGAAGATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGTAATATTCTATTTGAAGTATGTATTTAAAAATTTTAAATTATCCCATATAAGCTAACAATTTTGTCATTTCTATCTAGAATTCATAAACATAGGAAAGGAGATGGAAGCTGCATTTGAGAATCGAAATAATGACTCTATGGTCTAAATCCCTATTCTCAAATCTTTATTTACATTTTTTTGTTTTAAATTCTTAACTTGTTAAATATTGAATCTTGTTTTTTTAGAGTCTTGAAGCATAGTGATGGAAGCAATTGTAGGCAAAAGAAAATTTCATGTATGATTTATGTAAATTGAGAATACCTTTTTTTTTTTTTTGTGATTTTCCTCTAATAGTGTTGAATCTTCATGTTCTTTATATTTTGGAGTTTGGTTGATAATTTCTGTATTTTATTGATCAAAACCTGTAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGA

mRNA sequence

ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGA

Coding sequence (CDS)

ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGA

Protein sequence

MFNSPRYFFLGVTLLELIAHSRGFWVYAKMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVIDNMENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEHQRGRRLIYMWMIMGG
Homology
[Close]
BLAST of MELO3C035641 vs. NCBI nr
Match: TYK14792.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LEDHDPSYL KDDIP  ED DNA+V                           
Sbjct: 19  KCQKTFERLEDHDPSYLPKDDIPIAEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79  SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138

[Close]
BLAST of MELO3C035641 vs. NCBI nr
Match: KAA0038191.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LEDHDPSYL KDDIP  ED DNA+V                           
Sbjct: 19  KCQKTFERLEDHDPSYLPKDDIPIVEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79  SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138

[Close]
BLAST of MELO3C035641 vs. NCBI nr
Match: KAA0051411.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 55/122 (45.08%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LE HDPSYL KDDIPTTED DNA+V                           
Sbjct: 162 KCQKTFERLEVHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID A+EI
Sbjct: 222 SIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGADEI 281

[Close]
BLAST of MELO3C035641 vs. NCBI nr
Match: KAA0068065.1 (putative transposase [Cucumis melo var. makuwa] >TYK26049.1 putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 54/122 (44.26%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LE+HDPSYL KDDIPTTED +NA+V                           
Sbjct: 162 KCQKTFERLEEHDPSYLPKDDIPTTEDWENAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID  EEI
Sbjct: 222 SIPISTVTSESAFSAGGQVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGTEEI 281

[Close]
BLAST of MELO3C035641 vs. NCBI nr
Match: KAA0038333.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 54/122 (44.26%), Postives = 59/122 (48.36%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LE+HDPSYL KDDIPTTED DNA+V                           
Sbjct: 19  KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKAFSEVNSSRFKIISQVARDIY 78

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ LICVQN IQ KPLDDM EEID  EEI
Sbjct: 79  SIPISTVPSESAFSTEGRVLDSFRSSLTPQTAEVLICVQNWIQFKPLDDMTEEIDGTEEI 138

[Close]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match: A0A5A7T979 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00230 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.3e-13
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LEDHDPSYL KDDIP  ED DNA+V                           
Sbjct: 19  KCQKTFERLEDHDPSYLPKDDIPIVEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79  SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138

[Close]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match: A0A5D3CTM4 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00330 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.3e-13
Identity = 55/122 (45.08%), Postives = 59/122 (48.36%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LEDHDPSYL KDDIP  ED DNA+V                           
Sbjct: 19  KCQKTFERLEDHDPSYLPKDDIPIAEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 78

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID AEEI
Sbjct: 79  SIPISTVPFESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEI 138

[Close]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match: A0A5D3DRN1 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00020 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 54/122 (44.26%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LE+HDPSYL KDDIPTTED +NA+V                           
Sbjct: 162 KCQKTFERLEEHDPSYLPKDDIPTTEDWENAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID  EEI
Sbjct: 222 SIPISTVTSESAFSAGGQVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGTEEI 281

[Close]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match: A0A5A7UCY2 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001540 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 55/122 (45.08%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LE HDPSYL KDDIPTTED DNA+V                           
Sbjct: 162 KCQKTFERLEVHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSEVNSSRFKIISQVARDIY 221

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ALIC QN IQSKPLDDM EEID A+EI
Sbjct: 222 SIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGADEI 281

[Close]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match: A0A5A7T5X1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002070 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 54/122 (44.26%), Postives = 59/122 (48.36%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV--------------------------- 88
           K + TFE+LE+HDPSYL KDDIPTTED DNA+V                           
Sbjct: 19  KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKAFSEVNSSRFKIISQVARDIY 78

Query: 89  -------------------------SLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEI 99
                                    SLTPQ A+ LICVQN IQ KPLDDM EEID  EEI
Sbjct: 79  SIPISTVPSESAFSTEGRVLDSFRSSLTPQTAEVLICVQNWIQFKPLDDMTEEIDGTEEI 138

The following BLAST results are available for this feature:
BLAST of MELO3C035641 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035641 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14792.11.3e-1245.08zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... [more]
KAA0038191.11.3e-1245.08zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... [more]
KAA0051411.11.7e-1245.08putative transposase [Cucumis melo var. makuwa][more]
KAA0068065.11.7e-1244.26putative transposase [Cucumis melo var. makuwa] >TYK26049.1 putative transposase... [more]
KAA0038333.12.9e-1244.26zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... [more]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T9796.3e-1345.08Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... [more]
A0A5D3CTM46.3e-1345.08Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... [more]
A0A5D3DRN18.2e-1344.26Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118... [more]
A0A5A7UCY28.2e-1345.08Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G... [more]
A0A5A7T5X11.4e-1244.26Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... [more]
BLAST of MELO3C035641 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035641.1MELO3C035641.1mRNA