MELO3C035633.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035633.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pentatricopeptide repeat-containing protein
Location	chr12: 16034263 .. 16034610 (+)
RNA-Seq Expression	MELO3C035633.jh1
Synteny	MELO3C035633.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAACCAAAAGAAATAATCCCCTTCTACGCTGCTCTCCTCGAAGCGTGCTCCTCCACCAAGAACCTCTACACTCACAAGCAAATTCACGCTCTTACCATAAGACTCCAAATCTCTTACAACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCCGCCTGCGCCCAACTCCCTCAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATGCTCTCATCAGAGCCCACTCTGCTCTCCATCTCTTCTCCCAATCCCTCTCCATTTTTCACCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTTTCCGCCGGTGCTGA

mRNA sequence

ATGTCCAAACCAAAAGAAATAATCCCCTTCTACGCTGCTCTCCTCGAAGCGTGCTCCTCCACCAAGAACCTCTACACTCACAAGCAAATTCACGCTCTTACCATAAGACTCCAAATCTCTTACAACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCCGCCTGCGCCCAACTCCCTCAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATGCTCTCATCAGAGCCCACTCTGCTCTCCATCTCTTCTCCCAATCCCTCTCCATTTTTCACCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTTTCCGCCGGTGCTGA

Coding sequence (CDS)

ATGTCCAAACCAAAAGAAATAATCCCCTTCTACGCTGCTCTCCTCGAAGCGTGCTCCTCCACCAAGAACCTCTACACTCACAAGCAAATTCACGCTCTTACCATAAGACTCCAAATCTCTTACAACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCCGCCTGCGCCCAACTCCCTCAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATGCTCTCATCAGAGCCCACTCTGCTCTCCATCTCTTCTCCCAATCCCTCTCCATTTTTCACCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTTTCCGCCGGTGCTGA

Protein sequence

MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTFRRC

Homology

[Close]

BLAST of MELO3C035633.jh1 vs. NCBI nr
Match: KAA0059103.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 6.67e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]

BLAST of MELO3C035633.jh1 vs. NCBI nr
Match: XP_008455480.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 193 bits (491), Expect = 6.67e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]

BLAST of MELO3C035633.jh1 vs. NCBI nr
Match: XP_004144516.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus] >KGN43485.1 hypothetical protein Csa_020556 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 1.08e-57
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALL+ACSST NL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPTYLFN LIRAHS+L LFSQSLSIF HMLLSGKSIDRHT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHT 111

[Close]

BLAST of MELO3C035633.jh1 vs. NCBI nr
Match: XP_038877225.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 182 bits (462), Expect = 1.59e-54
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP+EIIPFYAALLEACS+TKNL+T KQIHALTIR +IS++ FIRTKLASTYAACAQL 
Sbjct: 1   MPKPQEIIPFYAALLEACSATKNLHTLKQIHALTIRHRISHHDFIRTKLASTYAACAQLR 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF HMLLS KS D+HTF
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSRKSFDQHTF 112

[Close]

BLAST of MELO3C035633.jh1 vs. NCBI nr
Match: XP_022973156.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 181 bits (459), Expect = 4.75e-54
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP++IIPFYAALL+ACSSTKN +T KQIHALTIRL IS++ FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF HMLLSGK IDRHT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHT 111

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy Swiss-Prot
Match: Q3E9N1 (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E98 PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 18  CSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLF 77
           C  + +L + ++ +AL I   +S N F+ +KL S+YA+  +   ++ +F   TRR  +L+
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 78  NALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 112
           N++I+AH +   +++SL  F  MLLSG+S D  T
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFT 127

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy Swiss-Prot
Match: Q9C501 (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E57 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 25/99 (25.25%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   KPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQA 62
           +P E+      +L AC+ T  L   K IHA   R  +S + F+   L   Y  C  L +A
Sbjct: 257 RPNEVT--VVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEA 316

Query: 63  TTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHML 102
           +++F  A+++    +N++I   +      +++++F  M+
Sbjct: 317 SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMM 353

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-04
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 10  FYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFA 69
           FYA+L+++ +    L   KQIHA  + L + ++ F+ TKL    ++   +  A  +F   
Sbjct: 23  FYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 82

Query: 70  TRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 113
            R   + +NA+IR +S  + F  +L ++ +M L+  S D  TF
Sbjct: 83  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UT42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold786G00080 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.23e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C0K0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495634 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.23e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K1F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 5.22e-58
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALL+ACSST NL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPTYLFN LIRAHS+L LFSQSLSIF HMLLSGKSIDRHT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHT 111

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I7X0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471666 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 2.30e-54
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP++IIPFYAALL+ACSSTKN +T KQIHALTIRL IS++ FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF HMLLSGK IDRHT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHT 111

[Close]

BLAST of MELO3C035633.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EHW3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434233 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.40e-52
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP++IIPFYAALL+ACSSTKN  T KQIHALTIRL IS++ FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF  MLLSGK IDRHT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHT 111

[Close]

BLAST of MELO3C035633.jh1 vs. TAIR 10
Match: AT4G39952.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 18  CSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLF 77
           C  + +L + ++ +AL I   +S N F+ +KL S+YA+  +   ++ +F   TRR  +L+
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 78  NALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 112
           N++I+AH +   +++SL  F  MLLSG+S D  T
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFT 127

[Close]

BLAST of MELO3C035633.jh1 vs. TAIR 10
Match: AT1G33350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 25/99 (25.25%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   KPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQA 62
           +P E+      +L AC+ T  L   K IHA   R  +S + F+   L   Y  C  L +A
Sbjct: 257 RPNEVT--VVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEA 316

Query: 63  TTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHML 102
           +++F  A+++    +N++I   +      +++++F  M+
Sbjct: 317 SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMM 353

[Close]

BLAST of MELO3C035633.jh1 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-05
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 10  FYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFA 69
           FYA+L+++ +    L   KQIHA  + L + ++ F+ TKL    ++   +  A  +F   
Sbjct: 23  FYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 82

Query: 70  TRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 113
            R   + +NA+IR +S  + F  +L ++ +M L+  S D  TF
Sbjct: 83  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122

[Close]

BLAST of MELO3C035633.jh1 vs. TAIR 10
Match: AT2G40720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 23/90 (25.56%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 11  YAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFAT 70
           +   L ACS ++N    +QIH   +++ +  + ++ T L S Y+ C  + +A T+FS   
Sbjct: 275 FTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVV 334

Query: 71  RRPTYLFNALIRAHSALHLFSQSLSIFHHM 101
            +   ++NA++ A++       +L +F  M
Sbjct: 335 DKRLEIWNAMVAAYAENDYGYSALDLFGFM 364

[Close]

BLAST of MELO3C035633.jh1 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 27/92 (29.35%), Postives = 44/92 (47.83%), Query Frame = 0


Query: 12  AALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATR 71
           +++L +C+S   L    Q+HA TI+  +  + ++   L   YA C  L  A  +F     
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 72  RPTYLFNALIRAHSALHL---FSQSLSIFHHM 101
               LFNA+I  +S L       ++L+IF  M
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDM 445

The following BLAST results are available for this feature:

BLAST of MELO3C035633.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059103.1	6.67e-59	88.39	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627...	[more]
XP_008455480.1	6.67e-59	88.39	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
XP_004144516.1	1.08e-57	87.39	pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sa...	[more]
XP_038877225.1	1.59e-54	83.93	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benin...	[more]
XP_022973156.1	4.75e-54	83.78	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]

BLAST of MELO3C035633.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E9N1	2.8e-07	35.11	Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidop...	[more]
Q9C501	1.7e-04	25.25	Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana OX...	[more]
Q9LTV8	3.8e-04	30.10	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C035633.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT42	3.23e-59	88.39	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C0K0	3.23e-59	88.39	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A0A0K1F7	5.22e-58	87.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1	[more]
A0A6J1I7X0	2.30e-54	83.78	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A6J1EHW3	1.40e-52	82.88	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]

BLAST of MELO3C035633.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39952.1	2.0e-08	35.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G33350.1	1.2e-05	25.25	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G12770.1	2.7e-05	30.10	mitochondrial editing factor 22	[more]
AT2G40720.1	3.0e-04	25.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39530.1	3.0e-04	29.35	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 5..115 e-value: 5.9E-7 score: 31.2
None	No IPR available	PANTHER	PTHR47924:SF27	SUBFAMILY NOT NAMED	coord: 10..112
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 10..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035633.jh1.t1	MELO3C035633.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding