Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATTCTCACTTTACTCACTCTTCTATGTCAAACCCTAGCTCTCTTCTCGCGCTAAACTCTTCATACCCTCTCTTATCAATCACTCACTCTTCCACCATTAATCCATGATTGCCGAAGATCTTTCGAAGCAAGTCGTACTACCACCGCCGAAGTTCATCGCGCTATTGTTTCGTACGGACAGCAGTTCACTCTATTTTCTCATTCACTCTCTTGCTGTTAATGTTGCTTACAATCATCGCGTGTTGGTGATTGATGGGAAAGAGAGAGTGTTGGTTTCTAAATTCATACACTATCCTCAGAGTATTCTGGAGGTTTGTTTTCTTTTTCTTGCTTTGAGAATTTGTTTTGTATCTATATCGGTTTTGTGGTTTCTTGAATTTTAAATGTGGCTAGGGATATTCAGAAATCTAAGGATGGAAGTTGTATGTGATCGAGGCTTATGTGCTTTGGAATCTACATGAACGGGTTTGGAATTTGGTACATTTTTGTGAACTCATCGATTAAAATTGGGGAGGGGGACAATGAACGAAGTTTTGTCATAAAATCTAATAATTGTGATGCTTTAATAAGAAGGATGTCTATCTCAGTTGTGAGTTTTAAATGTGTAGATCTGTGTCTATAAGTTGTTGCACGAAGTTAAAAATTGCTGATACATTTTTAACTTTGTATATTGACATCGCTTAGAAGAACTAAAATGATTTATTTACCCATCCATTAAGTTTAGCCCTGAGTTCACTTGCAATAGAATTTCTTTGCTAGTGGTTGGTCGTGTTGTTGTATGAAGCTTATAGCAAACTTAATTTTCACATTGCTAGCGGGCTTATTTATTCAATGAAAAGTATATTGAAAGTTCACTAACTACGCAACTTTATTTTTCTTTAGTTGTATTTGTTAACCTTTTTTCTTTCTGTTGTAACTAACTCATTGGCATGTTTGGTATCAAAGGGGATCTACTTGATGTTGTTGTTTCTCCATTGGCCAAGTCTATTACTGATGGAACGCTGGCAAAATTCTTGAAGAGTACATCATTTACTTTTTACCAATATTGATTGTTGCTACATGACACAAATCGTTTTTGGTTACTTATTAAAAATCATTCTAATATGTCGATGTCAGATCCGGATGATAGAGTAGAATTGAATGAAGCATTTGCTCAAATTGAAATAGGTAAGATGTTAATTTATAGATTTATAGTTGAAAATTGATTTTCTTTCCCTTCCCTTATGAAAATGATTGGGAAATTGTATTGGATAGCACAATAAAAATCCAATTTAGCAATATTAGTACTAGCATTTTTAATTTTGCAAATATAGCAACTTTTTAATTTTGGTTGATATTTCTTATTTTATTCTTTTTATTATTCCAAAATTGCCCGTCTTTGGTGTTTTCTCTTCCTCTTTCGTTTTTCTTTATTGTTCTCCTTCATTTTTCGTTTTCTTCTTCTCCTCTATCGTTCTTCTTCACCATTTCTCCTATTCACCTACTTCTCTTCTCCTCGTCTTCTTCTGCCTCTTCTCCACTGTTCTTCTCTTCTCTCTTCAGTTTTGTTCTTTTAGATTTCTCCCTCTTTGTCGGCTTCTCTCTTTTTTTTTTATCATCTTCTCTTCGTCTTCTTCTCCCATTGTCCTCCTTTTTTCTTCAGGGAAAACAAGAATTATGTATGTATTTCTTCCCCTTTTTTGAAACCCTAATATTATTTCTGTAAATTGCTCATATATTATTTATTAAAATTAGGGCTACGGTTAGTTCTTCCTCATCTCTTTTATTTGTTCATAATATCTTTTATCGAAAGGAACTTTGTAGATCAGTTTGATTTTATTTAGTTACGTTCGGTTCTTTTTTTTTTTAATTTGTATCAGTTTTTTATATCAACGGTATGATATACTTATATTATATGTATTAGTTGACTGATATACTTACTCGTGTTTTTTATTTTTCCAAAATTGTTGCAGTTCATTGTAGTTATGGTTAAATTGGCAGTAATTGTTTTTCAAAGTGATGGGATGAGCAACATTACTACGTGGATTACAAAACAAATTGTGTTTTGGTTGATGAAGCGATATCATCATTTGATTCTTTTGTGAACTTGATTCATACTGAAATTCAGGTTGAGTCATGTATTGAACTTTCAATTTTAATTTGTTGACTATAGGCGATAATGATGTTCAACATGTTATTAAGATTGTAGACATACCATAACAAATGTATCGACAATACATAAAGTGTATCATGCTTAGTGCATCTGGTGTATTTAATTAATTGAGTGTATCAACAGTTTCGCAAGTGTATCAACAACATATCAAGTGCTTCAAACTAA
mRNA sequence
CTATTCTCACTTTACTCACTCTTCTATGTCAAACCCTAGCTCTCTTCTCGCGCTAAACTCTTCATACCCTCTCTTATCAATCACTCACTCTTCCACCATTAATCCATGATTGCCGAAGATCTTTCGAAGCAAGTCGTACTACCACCGCCGAAGTTCATCGCGCTATTGTTTCGTACGGACAGCAGTTCACTCTATTTTCTCATTCACTCTCTTGCTGTTAATGTTGCTTACAATCATCGCGTGTTGGTGATTGATGGGAAAGAGAGAGTGTTGGTTTCTAAATTCATACACTATCCTCAGAGTATTCTGGAGTTTTTTATATCAACGTTCATTGTAGTTATGGTTAAATTGGCAGTAATTGTTTTTCAAAGTGATGGGATGAGCAACATTACTACGTGGATTACAAAACAAATTTTTCGCAAGTGTATCAACAACATATCAAGTGCTTCAAACTAA
Coding sequence (CDS)
ATGATTGCCGAAGATCTTTCGAAGCAAGTCGTACTACCACCGCCGAAGTTCATCGCGCTATTGTTTCGTACGGACAGCAGTTCACTCTATTTTCTCATTCACTCTCTTGCTGTTAATGTTGCTTACAATCATCGCGTGTTGGTGATTGATGGGAAAGAGAGAGTGTTGGTTTCTAAATTCATACACTATCCTCAGAGTATTCTGGAGTTTTTTATATCAACGTTCATTGTAGTTATGGTTAAATTGGCAGTAATTGTTTTTCAAAGTGATGGGATGAGCAACATTACTACGTGGATTACAAAACAAATTTTTCGCAAGTGTATCAACAACATATCAAGTGCTTCAAACTAA
Protein sequence
MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFFISTFIVVMVKLAVIVFQSDGMSNITTWITKQIFRKCINNISSASN
Homology
BLAST of MELO3C034985 vs. NCBI nr
Match:
TYK11911.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Cucumis melo var. makuwa])
HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
Query: 61 IHYPQSILE 70
IHYPQSILE
Sbjct: 61 IHYPQSILE 69
BLAST of MELO3C034985 vs. NCBI nr
Match:
KAA0046030.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Cucumis melo var. makuwa])
HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0
Query: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSL VNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLVVNVAYNHRVLVIDGKERVLVSKF 60
Query: 61 IHYPQSILE 70
IHYP+SILE
Sbjct: 61 IHYPRSILE 69
BLAST of MELO3C034985 vs. ExPASy Swiss-Prot
Match:
Q9SCV4 (Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2)
HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 29 LYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
L ++ + A NV Y+HR LVIDGK +VL+S IHYP+S E +
Sbjct: 21 LVIVVAATAANVTYDHRALVIDGKRKVLISGSIHYPRSTPEMW 63
BLAST of MELO3C034985 vs. ExPASy Swiss-Prot
Match:
Q10NX8 (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE=1 SV=2)
HSP 1 Score: 44.7 bits (104), Expect = 8.5e-04
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 0
Query: 35 SLAVNVAYNHRVLVIDGKERVLVSKFIHYPQS 67
S A NV Y+HR +VIDG RVLVS IHYP+S
Sbjct: 28 SRAANVTYDHRAVVIDGVRRVLVSGSIHYPRS 59
BLAST of MELO3C034985 vs. ExPASy TrEMBL
Match:
A0A5D3CJC5 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00770 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
Query: 61 IHYPQSILE 70
IHYPQSILE
Sbjct: 61 IHYPQSILE 69
BLAST of MELO3C034985 vs. ExPASy TrEMBL
Match:
A0A5A7TSA4 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006000 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0
Query: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSL VNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1 MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLVVNVAYNHRVLVIDGKERVLVSKF 60
Query: 61 IHYPQSILE 70
IHYP+SILE
Sbjct: 61 IHYPRSILE 69
BLAST of MELO3C034985 vs. TAIR 10
Match:
AT2G28470.1 (beta-galactosidase 8 )
HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 29 LYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
L ++ + A NV Y+HR LVIDGK +VL+S IHYP+S E +
Sbjct: 21 LVIVVAATAANVTYDHRALVIDGKRKVLISGSIHYPRSTPEMW 63
BLAST of MELO3C034985 vs. TAIR 10
Match:
AT2G28470.2 (beta-galactosidase 8 )
HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 29 LYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
L ++ + A NV Y+HR LVIDGK +VL+S IHYP+S E +
Sbjct: 15 LVIVVAATAANVTYDHRALVIDGKRKVLISGSIHYPRSTPEMW 57
BLAST of MELO3C034985 vs. TAIR 10
Match:
AT3G52840.1 (beta-galactosidase 2 )
HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query: 32 LIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
LIHS V Y+H+ L+I+G+ R+L+S IHYP+S E +
Sbjct: 21 LIHSTEAVVTYDHKALIINGQRRILISGSIHYPRSTPEMW 60
BLAST of MELO3C034985 vs. TAIR 10
Match:
AT2G32810.1 (beta galactosidase 9 )
HSP 1 Score: 40.8 bits (94), Expect = 8.7e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0
Query: 39 NVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
NV+Y+HR L+I GK R+LVS IHYP++ E +
Sbjct: 37 NVSYDHRALIIAGKRRMLVSAGIHYPRATPEMW 69
BLAST of MELO3C034985 vs. TAIR 10
Match:
AT2G32810.2 (beta galactosidase 9 )
HSP 1 Score: 40.8 bits (94), Expect = 8.7e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0
Query: 39 NVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
NV+Y+HR L+I GK R+LVS IHYP++ E +
Sbjct: 37 NVSYDHRALIIAGKRRMLVSAGIHYPRATPEMW 69
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK11911.1 | 3.6e-28 | 100.00 | dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... | [more] |
| KAA0046030.1 | 3.1e-27 | 97.10 | dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9SCV4 | 2.2e-04 | 51.16 | Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2 | [more] |
| Q10NX8 | 8.5e-04 | 65.63 | Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CJC5 | 1.8e-28 | 100.00 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... | [more] |
| A0A5A7TSA4 | 1.5e-27 | 97.10 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... | [more] |
