MELO3C034985 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034985
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1
Location	chr11: 12956514 .. 12958831 (+)
RNA-Seq Expression	MELO3C034985
Synteny	MELO3C034985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTCTCACTTTACTCACTCTTCTATGTCAAACCCTAGCTCTCTTCTCGCGCTAAACTCTTCATACCCTCTCTTATCAATCACTCACTCTTCCACCATTAATCCATGATTGCCGAAGATCTTTCGAAGCAAGTCGTACTACCACCGCCGAAGTTCATCGCGCTATTGTTTCGTACGGACAGCAGTTCACTCTATTTTCTCATTCACTCTCTTGCTGTTAATGTTGCTTACAATCATCGCGTGTTGGTGATTGATGGGAAAGAGAGAGTGTTGGTTTCTAAATTCATACACTATCCTCAGAGTATTCTGGAGGTTTGTTTTCTTTTTCTTGCTTTGAGAATTTGTTTTGTATCTATATCGGTTTTGTGGTTTCTTGAATTTTAAATGTGGCTAGGGATATTCAGAAATCTAAGGATGGAAGTTGTATGTGATCGAGGCTTATGTGCTTTGGAATCTACATGAACGGGTTTGGAATTTGGTACATTTTTGTGAACTCATCGATTAAAATTGGGGAGGGGGACAATGAACGAAGTTTTGTCATAAAATCTAATAATTGTGATGCTTTAATAAGAAGGATGTCTATCTCAGTTGTGAGTTTTAAATGTGTAGATCTGTGTCTATAAGTTGTTGCACGAAGTTAAAAATTGCTGATACATTTTTAACTTTGTATATTGACATCGCTTAGAAGAACTAAAATGATTTATTTACCCATCCATTAAGTTTAGCCCTGAGTTCACTTGCAATAGAATTTCTTTGCTAGTGGTTGGTCGTGTTGTTGTATGAAGCTTATAGCAAACTTAATTTTCACATTGCTAGCGGGCTTATTTATTCAATGAAAAGTATATTGAAAGTTCACTAACTACGCAACTTTATTTTTCTTTAGTTGTATTTGTTAACCTTTTTTCTTTCTGTTGTAACTAACTCATTGGCATGTTTGGTATCAAAGGGGATCTACTTGATGTTGTTGTTTCTCCATTGGCCAAGTCTATTACTGATGGAACGCTGGCAAAATTCTTGAAGAGTACATCATTTACTTTTTACCAATATTGATTGTTGCTACATGACACAAATCGTTTTTGGTTACTTATTAAAAATCATTCTAATATGTCGATGTCAGATCCGGATGATAGAGTAGAATTGAATGAAGCATTTGCTCAAATTGAAATAGGTAAGATGTTAATTTATAGATTTATAGTTGAAAATTGATTTTCTTTCCCTTCCCTTATGAAAATGATTGGGAAATTGTATTGGATAGCACAATAAAAATCCAATTTAGCAATATTAGTACTAGCATTTTTAATTTTGCAAATATAGCAACTTTTTAATTTTGGTTGATATTTCTTATTTTATTCTTTTTATTATTCCAAAATTGCCCGTCTTTGGTGTTTTCTCTTCCTCTTTCGTTTTTCTTTATTGTTCTCCTTCATTTTTCGTTTTCTTCTTCTCCTCTATCGTTCTTCTTCACCATTTCTCCTATTCACCTACTTCTCTTCTCCTCGTCTTCTTCTGCCTCTTCTCCACTGTTCTTCTCTTCTCTCTTCAGTTTTGTTCTTTTAGATTTCTCCCTCTTTGTCGGCTTCTCTCTTTTTTTTTTATCATCTTCTCTTCGTCTTCTTCTCCCATTGTCCTCCTTTTTTCTTCAGGGAAAACAAGAATTATGTATGTATTTCTTCCCCTTTTTTGAAACCCTAATATTATTTCTGTAAATTGCTCATATATTATTTATTAAAATTAGGGCTACGGTTAGTTCTTCCTCATCTCTTTTATTTGTTCATAATATCTTTTATCGAAAGGAACTTTGTAGATCAGTTTGATTTTATTTAGTTACGTTCGGTTCTTTTTTTTTTTAATTTGTATCAGTTTTTTATATCAACGGTATGATATACTTATATTATATGTATTAGTTGACTGATATACTTACTCGTGTTTTTTATTTTTCCAAAATTGTTGCAGTTCATTGTAGTTATGGTTAAATTGGCAGTAATTGTTTTTCAAAGTGATGGGATGAGCAACATTACTACGTGGATTACAAAACAAATTGTGTTTTGGTTGATGAAGCGATATCATCATTTGATTCTTTTGTGAACTTGATTCATACTGAAATTCAGGTTGAGTCATGTATTGAACTTTCAATTTTAATTTGTTGACTATAGGCGATAATGATGTTCAACATGTTATTAAGATTGTAGACATACCATAACAAATGTATCGACAATACATAAAGTGTATCATGCTTAGTGCATCTGGTGTATTTAATTAATTGAGTGTATCAACAGTTTCGCAAGTGTATCAACAACATATCAAGTGCTTCAAACTAA

mRNA sequence

CTATTCTCACTTTACTCACTCTTCTATGTCAAACCCTAGCTCTCTTCTCGCGCTAAACTCTTCATACCCTCTCTTATCAATCACTCACTCTTCCACCATTAATCCATGATTGCCGAAGATCTTTCGAAGCAAGTCGTACTACCACCGCCGAAGTTCATCGCGCTATTGTTTCGTACGGACAGCAGTTCACTCTATTTTCTCATTCACTCTCTTGCTGTTAATGTTGCTTACAATCATCGCGTGTTGGTGATTGATGGGAAAGAGAGAGTGTTGGTTTCTAAATTCATACACTATCCTCAGAGTATTCTGGAGTTTTTTATATCAACGTTCATTGTAGTTATGGTTAAATTGGCAGTAATTGTTTTTCAAAGTGATGGGATGAGCAACATTACTACGTGGATTACAAAACAAATTTTTCGCAAGTGTATCAACAACATATCAAGTGCTTCAAACTAA

Coding sequence (CDS)

ATGATTGCCGAAGATCTTTCGAAGCAAGTCGTACTACCACCGCCGAAGTTCATCGCGCTATTGTTTCGTACGGACAGCAGTTCACTCTATTTTCTCATTCACTCTCTTGCTGTTAATGTTGCTTACAATCATCGCGTGTTGGTGATTGATGGGAAAGAGAGAGTGTTGGTTTCTAAATTCATACACTATCCTCAGAGTATTCTGGAGTTTTTTATATCAACGTTCATTGTAGTTATGGTTAAATTGGCAGTAATTGTTTTTCAAAGTGATGGGATGAGCAACATTACTACGTGGATTACAAAACAAATTTTTCGCAAGTGTATCAACAACATATCAAGTGCTTCAAACTAA

Protein sequence

MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFFISTFIVVMVKLAVIVFQSDGMSNITTWITKQIFRKCINNISSASN

Homology

[Close]

BLAST of MELO3C034985 vs. NCBI nr
Match: TYK11911.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
          MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60

Query: 61 IHYPQSILE 70
          IHYPQSILE
Sbjct: 61 IHYPQSILE 69

[Close]

BLAST of MELO3C034985 vs. NCBI nr
Match: KAA0046030.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
          MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSL VNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLVVNVAYNHRVLVIDGKERVLVSKF 60

Query: 61 IHYPQSILE 70
          IHYP+SILE
Sbjct: 61 IHYPRSILE 69

[Close]

BLAST of MELO3C034985 vs. ExPASy Swiss-Prot
Match: Q9SCV4 (Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 29 LYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
          L  ++ + A NV Y+HR LVIDGK +VL+S  IHYP+S  E +
Sbjct: 21 LVIVVAATAANVTYDHRALVIDGKRKVLISGSIHYPRSTPEMW 63

[Close]

BLAST of MELO3C034985 vs. ExPASy Swiss-Prot
Match: Q10NX8 (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 8.5e-04
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 35 SLAVNVAYNHRVLVIDGKERVLVSKFIHYPQS 67
          S A NV Y+HR +VIDG  RVLVS  IHYP+S
Sbjct: 28 SRAANVTYDHRAVVIDGVRRVLVSGSIHYPRS 59

[Close]

BLAST of MELO3C034985 vs. ExPASy TrEMBL
Match: A0A5D3CJC5 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00770 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
          MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60

Query: 61 IHYPQSILE 70
          IHYPQSILE
Sbjct: 61 IHYPQSILE 69

[Close]

BLAST of MELO3C034985 vs. ExPASy TrEMBL
Match: A0A5A7TSA4 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006000 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLAVNVAYNHRVLVIDGKERVLVSKF 60
          MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSL VNVAYNHRVLVIDGKERVLVSKF
Sbjct: 1  MIAEDLSKQVVLPPPKFIALLFRTDSSSLYFLIHSLVVNVAYNHRVLVIDGKERVLVSKF 60

Query: 61 IHYPQSILE 70
          IHYP+SILE
Sbjct: 61 IHYPRSILE 69

[Close]

BLAST of MELO3C034985 vs. TAIR 10
Match: AT2G28470.1 (beta-galactosidase 8 )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 29 LYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
          L  ++ + A NV Y+HR LVIDGK +VL+S  IHYP+S  E +
Sbjct: 21 LVIVVAATAANVTYDHRALVIDGKRKVLISGSIHYPRSTPEMW 63

[Close]

BLAST of MELO3C034985 vs. TAIR 10
Match: AT2G28470.2 (beta-galactosidase 8 )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 29 LYFLIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
          L  ++ + A NV Y+HR LVIDGK +VL+S  IHYP+S  E +
Sbjct: 15 LVIVVAATAANVTYDHRALVIDGKRKVLISGSIHYPRSTPEMW 57

[Close]

BLAST of MELO3C034985 vs. TAIR 10
Match: AT3G52840.1 (beta-galactosidase 2 )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 32 LIHSLAVNVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
          LIHS    V Y+H+ L+I+G+ R+L+S  IHYP+S  E +
Sbjct: 21 LIHSTEAVVTYDHKALIINGQRRILISGSIHYPRSTPEMW 60

[Close]

BLAST of MELO3C034985 vs. TAIR 10
Match: AT2G32810.1 (beta galactosidase 9 )

HSP 1 Score: 40.8 bits (94), Expect = 8.7e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 39 NVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
          NV+Y+HR L+I GK R+LVS  IHYP++  E +
Sbjct: 37 NVSYDHRALIIAGKRRMLVSAGIHYPRATPEMW 69

[Close]

BLAST of MELO3C034985 vs. TAIR 10
Match: AT2G32810.2 (beta galactosidase 9 )

HSP 1 Score: 40.8 bits (94), Expect = 8.7e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 39 NVAYNHRVLVIDGKERVLVSKFIHYPQSILEFF 72
          NV+Y+HR L+I GK R+LVS  IHYP++  E +
Sbjct: 37 NVSYDHRALIIAGKRRMLVSAGIHYPRATPEMW 69

The following BLAST results are available for this feature:

BLAST of MELO3C034985 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11911.1	3.6e-28	100.00	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
KAA0046030.1	3.1e-27	97.10	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]

BLAST of MELO3C034985 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCV4	2.2e-04	51.16	Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2	[more]
Q10NX8	8.5e-04	65.63	Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE...	[more]

BLAST of MELO3C034985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJC5	1.8e-28	100.00	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
A0A5A7TSA4	1.5e-27	97.10	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]

BLAST of MELO3C034985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28470.1	1.6e-05	51.16	beta-galactosidase 8	[more]
AT2G28470.2	1.6e-05	51.16	beta-galactosidase 8	[more]
AT3G52840.1	1.7e-04	47.50	beta-galactosidase 2	[more]
AT2G32810.1	8.7e-04	54.55	beta galactosidase 9	[more]
AT2G32810.2	8.7e-04	54.55	beta galactosidase 9	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034985.1	MELO3C034985.1	mRNA