MELO3C034840 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034840
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Polynucleotide phosphorylase 1
Location	chr11: 7309223 .. 7315251 (-)
RNA-Seq Expression	MELO3C034840
Synteny	MELO3C034840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCTGCCTTATTGCCAATGAGTCACTGCTGTAGTTGTTCGTCATACCCCATTTTCTGCCGTAAAGCTTCGCCTGACATACAACCGTTCTTTGTTGTGTGCCTCTCTATTTTAATCTTTGTTTGCATTGAAAACATAGATTCGAGTCGCTTAGTCCCATCAAAGCTAGATCTGAGTTGCGAGTTCATTCCCATCTTCCTAGCCTTTCGAGTTATCCAAGTCGTTTTCCTCTATTACCGAGCTACGTGATACAAGCCAAGCTTCATAGCTTATTTAAGCTAACTCTTGGAGAGTTTTTTATGGTTTTGACATGGGTTATTTAAGGATCTAAATTTATATTAAATGGGGATAAAAATTTAGATTCTTTCTTAAGGAATGTGCTATTGGAGAAGTAACATTTGAATTTTTGGAATTCACGTCGAGATTGGAGTGGGGCTTAAGTTTCCATTGTTTAGGTAAGTGTGTGGAAGTCATTTTTGGATGAATGGATGAATGTGTTTGCAAAAGTGATTGATTTCCTGTTTATGTTTAGGTTTGTTCGTTTGGACTTTAGTTCGATCAAGGGATTTAGTTAAGTTCGAGGTAAGGGATTTCTACTACTGGACCCTATATGGAAGTTGGAATGTATTGACTGAAAGGACTTGATTGCTATATATATATATTAGAATGTGTTGATGGTTTATACTGAATTGAGATGGTTTAACTGTTATGCTTAATTTAAAATGTATTTATGGCTCATACTGTTGACTGAACTGTGATATGCATCAATGTGTTTTTTTTACTGGCTATGTGTAGAGGAGGAGTATTGTTAATAGTTTAATTGTATTTTGATGTGATTGTCTTAGAATATTTAGAATGGACTGAGGGGAAATTATTAGCTTTATCTATGGGGTAGGGTACCTTACAGAAACGGTGTACTATGGGATCACCAGATGTTGTACATCATTAGGGACCACTAGACTGATATGTGCATCCTTATGAGATCATTAGATTGATATGTACATCCTTCGGGATCACTAGATTGATTGACATGTATCCTACGGGATCATAAGAGTGTTATGATGCAGGGTACCTCCTAATAGGAATCTAATCATTTTAACTCTAATGGGACTAGTAGTGGGTCTCTTTCTAGGTATATTTTATACTCTCTCTTTTTATGTTTAACTTTTTTAGGCAAAGATAATATAAGAGGTAGACTGGCGAGGGGCAAGAAGGACTCGTGATCGCCATATAGGAACACTCTTTCAAATGCTTTCGCTTAACGTGTTTACTATTTTTAAGTTTTGATGATTGGAATGAGTTTCATGTTTAGAACAACTGTTTGTTTCTTGGTGACTTTTATAAACGATACTTGTGAACTTTTTTTTAAGTAGGGTCCGAATACAATTTTCTATTTTTTATGTCTATTTGATTTTAAACAGACTTAAAACTTTTATGTTTAAACGAAGTGTCTTTGTGTTAAAGTAATGACCTCAGCTTAGTCTGAAAAGTTGAGTCGTTAGAGTTGGTATCAGAGTCTAAGTTTTAGGTTCTATAGACTATCTTATGATGTAAGTCTATGTTTTGTGTCTCTATGGCTGAAATGAGTAATTGTCACTTGTCACGTATGCTTACATGATTTATATGTATGGTTTAATGTGTATGACCTTACCTAAGTTAAACTGCATGAAGTGATTTATTGTTTAAGATTAAAGAAGTTACTGTTGGATATTAAAAAAAAGCCACCAAGAAGAGGTGCGCGTAGTGGTGGTCGAGGAGGTCGAGGAAGAGGAGCAAGGTGTAACCAACCTGAAGATCAACTTGTTATACAAGCTACCGACCCTACTGCATTGGTCCTACTCAAGCGAACCTTGTTGTAATGAAGCAAAGGTTTAGAGACATGTTAACATAGACATTGGCACAACATCAGCCTTCCCAACTAGCTCTTATTCAAGCCTGAGTTGCACTTGTTCAAGCCTTAGTCTTATCTCAGAACGTACCGATCAGCAGTTAGTAGAAGTTAAACACTTGAGGGATTTCAAGAAGTATAGCCCTTCGACTTTCGATGGATCCTTGGAAGACCCCACCAAGGCACAGATGTGGTTGACATGAGGTTCCCTAACAACCAAACGGTACAGTGCGTTGTGTTCTTATTGAGGGAGAGAGGTACAGCCTAGTGGGAGTCCATAGAAAGGATGCTAGGTGGGGATGTAAATCAGATTACCTGGGAACAGTTGAAGGACAATTTTTATGCTAAATTCTTCTTTGCTAGCCTGAAAGATGCCAAGTGTCCGGAGTTCCTAGAATTGAAGCAAGGCCAAATTATTGTGGAGTAGTAGGAATTCGATATGTTGTCCTATTTTTCTCTTGAGTTAGTAAAGACTGAGACTGCCAGAGCCGATAGATTTGTCAAAGGTCTTAGGTTGGACCTCCAGGATTTCGTTTGAGCTTTCAGGCCAGCTACTTAAGTTAAAGCACTGCGCCTAGCAGTGGACGTGAGTTTACACGAAAGAGTTGCTATGTCCAAGACTTCAGAGAAAGGTTCATCCTGAGGACAGAAAAGGAAGGATGAGAGCAGCCTACTGTAGTGCCATAGAGGAACTTGAGATCTGGTGGAGACTTTTGTCGTTATCAGCAGAACTTTAGTAAGGCAAGTAAAGTTGCCATGGAGAAGTCATTGTGTAACATTTATGGGAAGCATCATCTGGGTCGTTGTTTGTTTGGATCTAGGACTTGCTTCAAGTGTAAGCAAGAGGGGCATATAGCTTATAGATGCTCTATGAGACTTACTGGGAATGCACAAAACCAAGGGGCAGGTATACCACAACTGGATAAAGTATTTGCTACTAATAAATATGAGGCTAAGAGAGTAGGCACGGTGGTGACAGGTATACTTCCAATGTTGGGGCATTATACTTTGATCCAGTTTAATTCTGGTTCATCTCATTCTCTTATATTTTCAATATTTATAACACATGCATGCTTAGAAGTGGAGCCCCTAGATTATATTTTATCAGTGTCTACTTCATTTGTGGAGATTATGTTGTTAAAAGAAAAGATAAAAGCATGTCAAATTGAGATACCAAGTCAAGTATTAGATGTAACTTTGTTGGTCCTGGATATGCATGATTTTGTTCGAGATATGGACATTATGAGTTCATTGTTATGTCTTTTGGGTTGACAAATGCTCCAACACTATTTATGGAATTGATGAATATAGTGTTTAAGGATTTCTTAGACTTTTCTATGACTGTATTTATTGATGATATCTTAGTGTAATCCAAGACAAAGACAAAGCATGAGGATCATTTGTGCATGGTTTTAGATACTCTTCGAGTCAACAAATTGTATGCAAAGTTTTCGAAATGTGAGTTTTGGCTTAAACATGTGTCTTGTCTAGGCCATATGGTGTCAAAAGATCGTATTTCTGTGGACCCAGCAAAGGTTGAAGCTTTACCAGTTGGCTCCGACCTTCCGTAGTTAGTGAGGTTCATAGCTTTCTGAGTTTAACAGGTTATTACTGACGATTTGTGGAGGACTTTTTTCGTATAGCTACTCCTTTAACTTAGTTTACCAAGGAAGGAACTCCATTTGTCTGGAGCAGAGTTTGTGAGGATAGTTTTCAGAACCTTAAGCAGAAGCTTGTTACTGAATCGATTTTTATTGTACCTGATGGTTCAGGTAGTTTTATGATTTACAGTAGTGATGCTTCTAAAAAGGCTTGGATTGTGTACTGATGCAACAAGGTAAGGTAGTTGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAACAGTCGTTTTCGTACTAAAGATTTAAAGGCATTACTAATTGTATGGTTAGAAGATATAGATATTTACTGACCATAAGAGCTTCAAATACTTCTTCACTCAGAAGGAGTTAAACATGAGACGACGAAGGTAGCTTCAGTTAATAAAGGATTATGACTGTTAGATATTGTATCATCCAAGTAAGGTGAATGTGGTAGTTAATGGTTTTAGTAGGAATGTGTCACATTTAACAGCACTTATTACTAGACAGGCCCTATTACACTGAGACTTTGAGAGAGTTGAGGTTGCAGTATCAATTGGGGTAGTCACCTCACAGTTAGCTCAGCTGTCAGTGCAACTGACTTTGAGACAAAAAATTATTGTTGCTCAGGGTAATGATCCTTATTTGGTTGAGAAGTGTCGCCTAACAAAAACTGGGCAAGCTGGTAGGTGGTTTGGCACATGCTTGCTCAGGATTGCCACATTTCTTAAAATGTTTGTGCAAGTCTCCGTTGTATTCATTGAAAGATTTGATGTTTAATGAATCTATTAAGTGCATGATTTGTGAAATCAAGCATGAAATACAGCTACAAAGGAAAAAACCACATGGATTAAGTTTCTGTATATGTAGGTTAGGATGAAACTAATAAACTTACCATAAAGAGCTCTTAATAATTCAATATATTTCGATGGAAGATCAGCAAACTTAAGATACCGGACTAGAAATCACTACAAGAAAAATGACCTACCATGACACTTCATTAAAACCCAAATTGAAATGAGAGGAAAAAATAATGTCATAAATGTCAAAATTAGCATATTTTTGAGGAAAAAACGATGTTTTCAAATTCCACTTCCAGTTAATTGTTGTCATAAAAATGTTAAAACATTAAATAAAAAAAACAATTCCGCCAAATTTCACTTTCCCCCTTTTATTTCTCACGCAAACCCTTTCACTTTACCCTTTCATTTTCTCATGAACGGTTGACGCTCCACCATGATGGTTGAAGTTCCACCACGGACGGTTATGCAACACCTTCTCCTTCTACCACGCGACACAACACCAAGAATGGTCCACCACATTGTTATTTTTGTTGACAATTTTGAGAACTCTTTAAAGATTTGTTCACTTTTTAATATTTACTAGTTTTTCATGATAGGATGGTATCCGTTTGTGGGTTCATTGGCTTTGCAAGATGCTGAAGTTCCAATTAAGTGTCCAATTGTTGGCCTAGCAATGGGATTGGTTCTTGGTACAAAGAATTTGGGGAGATGGAACTCCACTTATTCTGTTTGACATAACAGAATCTGAGGATGCTTCCAGAGATATGGAATTTAAGGTATTATTTTAAAGTTTTAATTGGTCTTTTATTAAAACAAGATTCCAATGCCTATAAAGTACGTTGTTGGAACTGTAGCTGCTAAACCCTGATTATTATGCATAAAACTGTTGTTTTACAGTTAGCTAGTAACAAAATGGGCATAACAGCATTTCAGATGGACATAAAGGTATGTTATTCGTAGGTTGTATTCCAGTTTCTTACAGATTGGTTAATAATTATGACATTTCTATAAATATGTTTACTTGATATTCTTCAAAAGTCCATGTGAAGATAAGAATCTGTCTCGATATTATAGGTGGGAGGCATTACTATACTCATTATGAGAGGTGCTCCTGCAAGCAAAGTTTAAGCGTAAGTATATTCTTTGTTAATAAACCCTCTTCGGTACTTCCTTTTAGAACTTGTTTATGATTGGGAATTTGTTTATGAGGAAGAAATCTAATTAGTTGGCAGTGTGTATATTCATTACATTGTATCAAAGAGAAATTTTAGCAATTAGCAAAAAGGGTTTTCCTTGATAAAGAAGATTAATTTCATTTATGATTGAATCAGGGTGAGCGCTCTGAATAATATTGAACTAGCATTCTGATAATATTGTAGTAATTTTGGAATATCCTAGTGACTTCTGTTTCTAAGATCCTCTAGAGTCTATTGTGATCATCATCAAAGGATACAGACCAATGAAATTAAACCATTTAGCTCTAGTAATGTTTTATGAATACTTGATATCTTGGTTGCCATAAAACTTATAAACCAAGATTTTTTTTGGAAAGGAAACATACCAAGACCATACTGTACTATTTTTCTACTTCCTCAAGTTTGCAATTAGAGCCGATAGCAGCTGGCTATGTTGTTTCTCTTTTTAGGACAACATATTTGAGTACAAGCTCCCATCATTACAA

mRNA sequence

ATGGAGATCTGCCTTATTGCCAATGAGTCACTGCTATTCGAGTCGCTTAGTCCCATCAAAGCTAGATCTGAGTTGCGAGTTCATTCCCATCTTCCTAGCCTTTCGAGTTATCCAAGTCGTTTTCCTCTATTACCGAGCTACGTGATACAAGCCAAGCTTCATAGCTTATTTAAGCTAACTCTTGGAGAGTTTTTTATGGTTTTGACATGGGAATGTGCTATTGGAGAAGTAACATTTGAATTTTTGGAATTCACGTCGAGATTGGAGTGGGGCTTAAGTTTCCATTGTTTAGGATGGTATCCGTTTGTGGGTTCATTGGCTTTGCAAGATGCTGAAGTTCCAATTAAGTGTCCAATTGTTGGCCTAGCAATGGGATTGGTTCTTGAATCTGAGGATGCTTCCAGAGATATGGAATTTAAGTTAGCTAGTAACAAAATGGGCATAACAGCATTTCAGATGGACATAAAGGACAACATATTTGAGTACAAGCTCCCATCATTACAA

Coding sequence (CDS)

ATGGAGATCTGCCTTATTGCCAATGAGTCACTGCTATTCGAGTCGCTTAGTCCCATCAAAGCTAGATCTGAGTTGCGAGTTCATTCCCATCTTCCTAGCCTTTCGAGTTATCCAAGTCGTTTTCCTCTATTACCGAGCTACGTGATACAAGCCAAGCTTCATAGCTTATTTAAGCTAACTCTTGGAGAGTTTTTTATGGTTTTGACATGGGAATGTGCTATTGGAGAAGTAACATTTGAATTTTTGGAATTCACGTCGAGATTGGAGTGGGGCTTAAGTTTCCATTGTTTAGGATGGTATCCGTTTGTGGGTTCATTGGCTTTGCAAGATGCTGAAGTTCCAATTAAGTGTCCAATTGTTGGCCTAGCAATGGGATTGGTTCTTGAATCTGAGGATGCTTCCAGAGATATGGAATTTAAGTTAGCTAGTAACAAAATGGGCATAACAGCATTTCAGATGGACATAAAGGACAACATATTTGAGTACAAGCTCCCATCATTACAA

Protein sequence

MEICLIANESLLFESLSPIKARSELRVHSHLPSLSSYPSRFPLLPSYVIQAKLHSLFKLTLGEFFMVLTWECAIGEVTFEFLEFTSRLEWGLSFHCLGWYPFVGSLALQDAEVPIKCPIVGLAMGLVLESEDASRDMEFKLASNKMGITAFQMDIKDNIFEYKLPSLQ

Homology

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BLAST of MELO3C034840 vs. NCBI nr
Match: XP_038904843.1 (probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 578 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 637

[Close]

BLAST of MELO3C034840 vs. NCBI nr
Match: XP_008443302.1 (PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 577 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 636

[Close]

BLAST of MELO3C034840 vs. NCBI nr
Match: KAA0053844.1 (putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 565 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 624

[Close]

BLAST of MELO3C034840 vs. NCBI nr
Match: TYK25556.1 (putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 577 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 636

[Close]

BLAST of MELO3C034840 vs. NCBI nr
Match: XP_011652202.1 (probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Cucumis sativus] >KGN59486.1 hypothetical protein Csa_002305 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 577 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 636

[Close]

BLAST of MELO3C034840 vs. ExPASy Swiss-Prot
Match: Q69LE7 (Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PNP1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-11
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           G LALQDA VPIK P+ G+AMGLVL+                  +EDAS DM+FK+A N+
Sbjct: 580 GCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNE 639

[Close]

BLAST of MELO3C034840 vs. ExPASy Swiss-Prot
Match: Q8GZQ3 (Polyribonucleotide nucleotidyltransferase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNP1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           G LALQDA VP+KC + G+AMG+V +                  +EDAS DM+FK+A N+
Sbjct: 579 GCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAEDASGDMDFKVAGNE 638

[Close]

BLAST of MELO3C034840 vs. ExPASy Swiss-Prot
Match: Q5L5B4 (Polyribonucleotide nucleotidyltransferase OS=Chlamydia abortus (strain DSM 27085 / S26/3) OX=218497 GN=pnp PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 37/65 (56.92%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLES------------EDASRDMEFKLASNKMGITAF 157
           G LAL DA VPIK PI G+AMGL+LE             ED   DM+FK+A N  GITAF
Sbjct: 445 GCLALMDAGVPIKTPIAGIAMGLILEDDHVTILSDISGLEDHLGDMDFKVAGNTEGITAF 504

[Close]

BLAST of MELO3C034840 vs. ExPASy Swiss-Prot
Match: Q822C1 (Polyribonucleotide nucleotidyltransferase OS=Chlamydophila caviae (strain ATCC VR-813 / DSM 19441 / GPIC) OX=227941 GN=pnp PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-10
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLES------------EDASRDMEFKLASNKMGITAF 157
           G LAL DA VPIK PI G+AMGL+L++            ED   DM+FK+A N  GITAF
Sbjct: 445 GCLALMDAGVPIKTPIAGIAMGLILDNDHVTILSDISGLEDYLGDMDFKVAGNTEGITAF 504

[Close]

BLAST of MELO3C034840 vs. ExPASy Swiss-Prot
Match: Q255L4 (Polyribonucleotide nucleotidyltransferase OS=Chlamydia felis (strain Fe/C-56) OX=264202 GN=pnp PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-10
Identity = 36/65 (55.38%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLES------------EDASRDMEFKLASNKMGITAF 157
           G LAL DA VPIK PI G+AMGL+L+             ED   DM+FK+A N  GITAF
Sbjct: 445 GCLALMDAGVPIKTPIAGIAMGLILDDDHVTILSDISGLEDHLGDMDFKVAGNAEGITAF 504

[Close]

BLAST of MELO3C034840 vs. ExPASy TrEMBL
Match: A0A5D3DPG4 (Polynucleotide phosphorylase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007090 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 577 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 636

[Close]

BLAST of MELO3C034840 vs. ExPASy TrEMBL
Match: A0A5A7UF08 (Polynucleotide phosphorylase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002350 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 565 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 624

[Close]

BLAST of MELO3C034840 vs. ExPASy TrEMBL
Match: A0A0A0LHJ6 (Polynucleotide phosphorylase 1 OS=Cucumis sativus OX=3659 GN=Csa_3G822370 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 577 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 636

[Close]

BLAST of MELO3C034840 vs. ExPASy TrEMBL
Match: A0A1S3B784 (Polynucleotide phosphorylase 1 OS=Cucumis melo OX=3656 GN=LOC103486923 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 45/71 (63.38%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPIKCPI G+AMGLVL+                  SEDAS DM+FKLA N+
Sbjct: 577 GSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNE 636

[Close]

BLAST of MELO3C034840 vs. ExPASy TrEMBL
Match: A0A6J1D386 (Polynucleotide phosphorylase 1 OS=Momordica charantia OX=3673 GN=LOC111016614 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 43/71 (60.56%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           GSLALQDA VPI+CPI G+AMGLVL+                  SEDAS DM+FK+A N+
Sbjct: 573 GSLALQDAGVPIRCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 632

[Close]

BLAST of MELO3C034840 vs. TAIR 10
Match: AT3G03710.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-11
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGLVLE------------------SEDASRDMEFKLASNK 157
           G LALQDA VP+KC + G+AMG+V +                  +EDAS DM+FK+A N+
Sbjct: 579 GCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAEDASGDMDFKVAGNE 638

[Close]

BLAST of MELO3C034840 vs. TAIR 10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 25/72 (34.72%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 104 GSLALQDAEVPIKCPIVGLAMGL-------------------VLESEDASRDMEFKLASN 157
           GS+AL DA +P++  + G+++GL                   +L  ED   DM+FK+A  
Sbjct: 495 GSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILGLEDHLGDMDFKIAGT 554

The following BLAST results are available for this feature:

BLAST of MELO3C034840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904843.1	5.3e-12	63.38	probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Benincasa h...	[more]
XP_008443302.1	5.3e-12	63.38	PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [...	[more]
KAA0053844.1	5.3e-12	63.38	putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa]	[more]
TYK25556.1	5.3e-12	63.38	putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa]	[more]
XP_011652202.1	5.3e-12	63.38	probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Cucumis sat...	[more]

BLAST of MELO3C034840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q69LE7	6.1e-11	53.52	Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic OS=Oryza sat...	[more]
Q8GZQ3	1.8e-10	49.30	Polyribonucleotide nucleotidyltransferase 1, chloroplastic OS=Arabidopsis thalia...	[more]
Q5L5B4	3.0e-10	56.92	Polyribonucleotide nucleotidyltransferase OS=Chlamydia abortus (strain DSM 27085...	[more]
Q822C1	5.1e-10	55.38	Polyribonucleotide nucleotidyltransferase OS=Chlamydophila caviae (strain ATCC V...	[more]
Q255L4	6.7e-10	55.38	Polyribonucleotide nucleotidyltransferase OS=Chlamydia felis (strain Fe/C-56) OX...	[more]

BLAST of MELO3C034840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPG4	2.6e-12	63.38	Polynucleotide phosphorylase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UF08	2.6e-12	63.38	Polynucleotide phosphorylase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0LHJ6	2.6e-12	63.38	Polynucleotide phosphorylase 1 OS=Cucumis sativus OX=3659 GN=Csa_3G822370 PE=3 S...	[more]
A0A1S3B784	2.6e-12	63.38	Polynucleotide phosphorylase 1 OS=Cucumis melo OX=3656 GN=LOC103486923 PE=3 SV=1	[more]
A0A6J1D386	1.3e-11	60.56	Polynucleotide phosphorylase 1 OS=Momordica charantia OX=3673 GN=LOC111016614 PE...	[more]

BLAST of MELO3C034840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03710.1	1.3e-11	49.30	polyribonucleotide nucleotidyltransferase, putative	[more]
AT5G14580.1	1.0e-05	34.72	polyribonucleotide nucleotidyltransferase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 102..164 e-value: 1.8E-13 score: 52.1
None	No IPR available	PANTHER	PTHR11252:SF12	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC	coord: 104..156
IPR012162	Polyribonucleotide nucleotidyltransferase	PANTHER	PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	coord: 104..156
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 108..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034840.1	MELO3C034840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
molecular_function	GO:0004654	polyribonucleotide nucleotidyltransferase activity
molecular_function	GO:0003723	RNA binding