MELO3C033834 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033834
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 14943212 .. 14943545 (+)
RNA-Seq Expression	MELO3C033834
Synteny	MELO3C033834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTTGAACAATCAGATGAGCTACAACAACAAGAGAATGCAGCAGTACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACATCAGAGAGTTCAAAGTTGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAAGTACTTACTACAAATTT

mRNA sequence

ATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTTGAACAATCAGATGAGCTACAACAACAAGAGAATGCAGCAGTACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACATCAGAGAGTTCAAAGTTGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAAGTACTTACTACAAATTT

Coding sequence (CDS)

ATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTTGAACAATCAGATGAGCTACAACAACAAGAGAATGCAGCAGTACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACATCAGAGAGTTCAAAGTTGA

Protein sequence

MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQS

Homology

[Close]

BLAST of MELO3C033834 vs. NCBI nr
Match: TYK01571.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
          MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ
Sbjct: 1  MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of MELO3C033834 vs. NCBI nr
Match: TYK02811.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 53  MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 112

Query: 61  S 62
           S
Sbjct: 113 S 113

[Close]

BLAST of MELO3C033834 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 251 MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 310

Query: 61  S 62
           S
Sbjct: 311 S 311

[Close]

BLAST of MELO3C033834 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 550 MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 609

Query: 61  S 62
           S
Sbjct: 610 S 610

[Close]

BLAST of MELO3C033834 vs. NCBI nr
Match: KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 699 MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 758

Query: 61  S 62
           S
Sbjct: 759 S 759

[Close]

BLAST of MELO3C033834 vs. ExPASy TrEMBL
Match: A0A5D3BP71 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001500 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.4e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
          MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ
Sbjct: 1  MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of MELO3C033834 vs. ExPASy TrEMBL
Match: A0A5D3BSU2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00180 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 53  MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 112

Query: 61  S 62
           S
Sbjct: 113 S 113

[Close]

BLAST of MELO3C033834 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 699 MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 758

Query: 61  S 62
           S
Sbjct: 759 S 759

[Close]

BLAST of MELO3C033834 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 550 MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 609

Query: 61  S 62
           S
Sbjct: 610 S 610

[Close]

BLAST of MELO3C033834 vs. ExPASy TrEMBL
Match: A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQ 60
           MHGHGRGRGEHNEYLYYEVPAAV EQS+ELQQQENAAVP Q DEQQQQENQEEIQ QRVQ
Sbjct: 251 MHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQ 310

Query: 61  S 62
           S
Sbjct: 311 S 311

The following BLAST results are available for this feature:

BLAST of MELO3C033834 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01571.1	1.7e-21	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK02811.1	1.2e-17	91.80	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK18891.1	1.2e-17	91.80	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0067080.1	1.2e-17	91.80	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0034013.1	1.2e-17	91.80	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of MELO3C033834 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BP71	8.4e-22	100.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSU2	5.6e-18	91.80	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7SU33	5.6e-18	91.80	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7VIP6	5.6e-18	91.80	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3D5R5	5.6e-18	91.80	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO3C033834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033834.1	MELO3C033834.1	mRNA