MELO3C033698 (gene) Melon (DHL92) v4

Overview
NameMELO3C033698
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr09: 13213926 .. 13214321 (-)
RNA-Seq ExpressionMELO3C033698
SyntenyMELO3C033698
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGATGACTTAATCGTAGAACATTTATTGCTATGGAACCTCTGATTGAGCAATTTGATATGGATGTAACTCAAGAATACATATTTAAATCTTGTCTAAGAAGTGCCTCATGTGACACAAACACATAGCAACTGGTTACATTATTCCAATGATAATGATGTTGATGTTTGAAATGGGATATTATGATTCAGGAGTCGGTCAATCATCAAACTTTGGAACAAGATATTACAATTCAGAGGCAGATCCATCATCGTCAAACTTTGGGCAAGGATACTATGCTTTAGGGATCAATCCATCATCTTCATACATGCATGCATGGACACAGGCACTGTCGTGAAAAACATAATGAATATTTGTATTATGAAGCGCCTGCAGCGTTCTCGAACAACTATATCA

mRNA sequence

TGCGATGACTTAATCGTAGAACATTTATTGCTATGGAACCTCTGATTGAGCAATTTGATATGGATGTAACTCAAGAATACATATTTAAATCTTGTCTAAGAAGTGCCTCATGTGACACAAACACATAGCAACTGGTTACATTATTCCAATGATAATGATGTTGATGTTTGAAATGGGATATTATGATTCAGGAGTCGGTCAATCATCAAACTTTGGAACAAGATATTACAATTCAGAGGCAGATCCATCATCGTCAAACTTTGGGCAAGGATACTATGCTTTAGGGATCAATCCATCATCTTCATACATGCATGCATGGACACAGGCACTGTCGTGAAAAACATAATGAATATTTGTATTATGAAGCGCCTGCAGCGTTCTCGAACAACTATATCA

Coding sequence (CDS)

ATGATAATGATGTTGATGTTTGAAATGGGATATTATGATTCAGGAGTCGGTCAATCATCAAACTTTGGAACAAGATATTACAATTCAGAGGCAGATCCATCATCGTCAAACTTTGGGCAAGGATACTATGCTTTAGGGATCAATCCATCATCTTCATACATGCATGCATGGACACAGGCACTGTCGTGA

Protein sequence

MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMHAWTQALS
Homology
BLAST of MELO3C033698 vs. NCBI nr
Match: KAA0047564.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK14961.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F MGYYD  VGQS +FGTRYYNSEADPSSSNFGQ YY LG NPSSSYMH
Sbjct: 50  VMMMSTFGMGYYDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMH 104

BLAST of MELO3C033698 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYD GVGQSS+FGT YYNSEA PSSSNFGQ YY LG +PSSSYMH
Sbjct: 196 VMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMH 250

BLAST of MELO3C033698 vs. NCBI nr
Match: TYK03402.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYDSGVGQSS FG RYYNSE  PSS++FGQ YY LG +PSSSYMH
Sbjct: 113 VVMMPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMH 167

BLAST of MELO3C033698 vs. NCBI nr
Match: KAA0050383.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYDSGVGQSS FG RYYNSE  PSS++FGQ YY LG +PSSSYMH
Sbjct: 118 VVMMPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMH 172

BLAST of MELO3C033698 vs. NCBI nr
Match: KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYD GVGQSS+FG  YYNSEA PSS++FGQ YY LG NPSSSYMH
Sbjct: 395 LMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMH 449

BLAST of MELO3C033698 vs. ExPASy TrEMBL
Match: A0A5A7TX85 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00110 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.5e-14
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F MGYYD  VGQS +FGTRYYNSEADPSSSNFGQ YY LG NPSSSYMH
Sbjct: 50  VMMMSTFGMGYYDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMH 104

BLAST of MELO3C033698 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYD GVGQSS+FGT YYNSEA PSSSNFGQ YY LG +PSSSYMH
Sbjct: 196 VMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMH 250

BLAST of MELO3C033698 vs. ExPASy TrEMBL
Match: A0A5D3BX46 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2679G00120 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYDSGVGQSS FG RYYNSE  PSS++FGQ YY LG +PSSSYMH
Sbjct: 113 VVMMPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMH 167

BLAST of MELO3C033698 vs. ExPASy TrEMBL
Match: A0A5A7U3A2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G001210 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYDSGVGQSS FG RYYNSE  PSS++FGQ YY LG +PSSSYMH
Sbjct: 118 VVMMPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMH 172

BLAST of MELO3C033698 vs. ExPASy TrEMBL
Match: A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   MIMMLMFEMGYYDSGVGQSSNFGTRYYNSEADPSSSNFGQGYYALGINPSSSYMH 56
           ++MM  F   YYD GVGQSS+FG  YYNSEA PSS++FGQ YY LG NPSSSYMH
Sbjct: 395 LMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMH 449

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047564.11.3e-1378.18GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0050408.12.8e-1172.73mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK03402.14.1e-1069.09GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0050383.14.1e-1069.09GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0037866.15.3e-1069.09mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TX856.5e-1478.18GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7U5581.4e-1172.73Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3BX462.0e-1069.09GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7U3A22.0e-1069.09GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7T6Q62.6e-1069.09Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033698.1MELO3C033698.1mRNA