MELO3C033429 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033429
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotrans_gag domain-containing protein
Location	chr03: 4100002 .. 4100339 (-)
RNA-Seq Expression	MELO3C033429
Synteny	MELO3C033429

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTCTCCAGAAAAAGTTAGGGGAGAGACACGTACCAACAAAAGGGGGCTTACTGTATGTTGACACCTGGATCAACCAAAAGCAGACTAAGAGCACTATGGTTGATTCTGGTGCAACCTACAACTTCATAACTGAGGCAGAAGCTAGACGTCTAAGACTCCGTTGGGAGAAGGATTCAAGAAGGATGAAGGCCGTGAATTCCGTTGCCCTACCTATCGTTGGACTAGTGAAGCGAACGACGATAAAGTTTGGAGGATGGAAAGGCCCCGTAGACTTTGTGGTTGTAAAGATGGACGACTTTGATGTAGTACTGGGAATGGAGTTCCTCCTTGA

mRNA sequence

ATGTCATCTCTCCAGAAAAAGTTAGGGGAGAGACACGTACCAACAAAAGGGGGCTTACTGTATGTTGACACCTGGATCAACCAAAAGCAGACTAAGAGCACTATGGTTGATTCTGGTGCAACCTACAACTTCATAACTGAGGCAGAAGCTAGACGTCTAAGACTCCGTTGGGAGAAGGATTCAAGAAGGATGAAGGCCGTGAATTCCGTTGCCCTACCTATCGTTGGACTAGTGAAGCGAACGACGATAAAGTTTGGAGGATGGAAAGGCCCCGTAGACTTTGTGGTTGTAAAGATGGACGACTTTGATGTAGTACTGGGAATGGAGTTCCTCCTTGA

Coding sequence (CDS)

ATGTCATCTCTCCAGAAAAAGTTAGGGGAGAGACACGTACCAACAAAAGGGGGCTTACTGTATGTTGACACCTGGATCAACCAAAAGCAGACTAAGAGCACTATGGTTGATTCTGGTGCAACCTACAACTTCATAACTGAGGCAGAAGCTAGACGTCTAAGACTCCGTTGGGAGAAGGATTCAAGAAGGATGAAGGCCGTGAATTCCGTTGCCCTACCTATCGTTGGACTAGTGAAGCGAACGACGATAAAGTTTGGAGGATGGAAAGGCCCCGTAGACTTTGTGGTTGTAAAGATGGACGACTTTGATGTAGTACTGGGAATGGAGTTCCTCCTT

Protein sequence

MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKDSRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL

Homology

[Close]

BLAST of MELO3C033429 vs. NCBI nr
Match: KAA0040892.1 (uncharacterized protein E6C27_scaffold345G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKK GE HVP+KGGLLYVDTWINQKQTKSTMVDSGAT+NFITEAEARRL+LRWEKD
Sbjct: 447 MSSLQKKSGESHVPSKGGLLYVDTWINQKQTKSTMVDSGATHNFITEAEARRLKLRWEKD 506

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S RMKAVNS+ALPIVGLVKRTTIK GGWKGPVDFVVVKMDDFDVVLGMEFLL
Sbjct: 507 SGRMKAVNSIALPIVGLVKRTTIKLGGWKGPVDFVVVKMDDFDVVLGMEFLL 558

[Close]

BLAST of MELO3C033429 vs. NCBI nr
Match: KAA0035082.1 (uncharacterized protein E6C27_scaffold57G001510 [Cucumis melo var. makuwa] >TYK03597.1 uncharacterized protein E5676_scaffold1369G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKK GERHVPTKGGLLYVDTWINQKQTKSTMVDSGAT+NFITEAEARRLRL WEKD
Sbjct: 316 MSSLQKKSGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATHNFITEAEARRLRLYWEKD 375

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFL 112
           S R+KAVNSVALPI+GLVKRTTIK GGWKGPVDFVVVKMDDFDVVLGMEFL
Sbjct: 376 SGRIKAVNSVALPIIGLVKRTTIKLGGWKGPVDFVVVKMDDFDVVLGMEFL 426

[Close]

BLAST of MELO3C033429 vs. NCBI nr
Match: KAA0066694.1 (uncharacterized protein E6C27_scaffold271G00270 [Cucumis melo var. makuwa] >TYK27844.1 uncharacterized protein E5676_scaffold384G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDS AT+NFI EAEARRLRLRWE+D
Sbjct: 396 MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSSATHNFIIEAEARRLRLRWERD 455

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S +MKAVNS+ALPIVGLVKRTTIK GGWKGPVDF+VVKMDDFDVVLGMEFLL
Sbjct: 456 SGKMKAVNSIALPIVGLVKRTTIKLGGWKGPVDFMVVKMDDFDVVLGMEFLL 507

[Close]

BLAST of MELO3C033429 vs. NCBI nr
Match: KAA0054272.1 (uncharacterized protein E6C27_scaffold131G002280 [Cucumis melo var. makuwa] >TYK14991.1 uncharacterized protein E5676_scaffold45G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.0e-51
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           M SLQKK GERHVPTKGGL+YVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD
Sbjct: 423 MLSLQKKSGERHVPTKGGLMYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 482

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S +MKAVNS+ALPI+GLVKRTTI+ GGWKGPVD VVVKMDDFDVVLGMEFLL
Sbjct: 483 SGKMKAVNSIALPIIGLVKRTTIRLGGWKGPVDLVVVKMDDFDVVLGMEFLL 534

[Close]

BLAST of MELO3C033429 vs. NCBI nr
Match: KAA0043587.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.0e-51
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKK GERHVPTKGGLLYVDTWINQKQT+STMVDSGAT+NFITEAEARRLRLRWEKD
Sbjct: 171 MSSLQKKSGERHVPTKGGLLYVDTWINQKQTESTMVDSGATHNFITEAEARRLRLRWEKD 230

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S RMKA+NSVALPIVGLVKR TIK GGWKGPVDFV+VKM+DFDVVLGMEFLL
Sbjct: 231 SERMKAMNSVALPIVGLVKRMTIKLGGWKGPVDFVIVKMNDFDVVLGMEFLL 282

[Close]

BLAST of MELO3C033429 vs. ExPASy TrEMBL
Match: A0A5A7TBQ6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00520 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKK GE HVP+KGGLLYVDTWINQKQTKSTMVDSGAT+NFITEAEARRL+LRWEKD
Sbjct: 447 MSSLQKKSGESHVPSKGGLLYVDTWINQKQTKSTMVDSGATHNFITEAEARRLKLRWEKD 506

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S RMKAVNS+ALPIVGLVKRTTIK GGWKGPVDFVVVKMDDFDVVLGMEFLL
Sbjct: 507 SGRMKAVNSIALPIVGLVKRTTIKLGGWKGPVDFVVVKMDDFDVVLGMEFLL 558

[Close]

BLAST of MELO3C033429 vs. ExPASy TrEMBL
Match: A0A5A7SV15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00110 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKK GERHVPTKGGLLYVDTWINQKQTKSTMVDSGAT+NFITEAEARRLRL WEKD
Sbjct: 316 MSSLQKKSGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATHNFITEAEARRLRLYWEKD 375

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFL 112
           S R+KAVNSVALPI+GLVKRTTIK GGWKGPVDFVVVKMDDFDVVLGMEFL
Sbjct: 376 SGRIKAVNSVALPIIGLVKRTTIKLGGWKGPVDFVVVKMDDFDVVLGMEFL 426

[Close]

BLAST of MELO3C033429 vs. ExPASy TrEMBL
Match: A0A5A7VH79 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00210 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDS AT+NFI EAEARRLRLRWE+D
Sbjct: 396 MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSSATHNFIIEAEARRLRLRWERD 455

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S +MKAVNS+ALPIVGLVKRTTIK GGWKGPVDF+VVKMDDFDVVLGMEFLL
Sbjct: 456 SGKMKAVNSIALPIVGLVKRTTIKLGGWKGPVDFMVVKMDDFDVVLGMEFLL 507

[Close]

BLAST of MELO3C033429 vs. ExPASy TrEMBL
Match: A0A5D3CT27 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00240 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           M SLQKK GERHVPTKGGL+YVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD
Sbjct: 423 MLSLQKKSGERHVPTKGGLMYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 482

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S +MKAVNS+ALPI+GLVKRTTI+ GGWKGPVD VVVKMDDFDVVLGMEFLL
Sbjct: 483 SGKMKAVNSIALPIIGLVKRTTIRLGGWKGPVDLVVVKMDDFDVVLGMEFLL 534

[Close]

BLAST of MELO3C033429 vs. ExPASy TrEMBL
Match: A0A5A7TP81 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00160 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSSLQKKLGERHVPTKGGLLYVDTWINQKQTKSTMVDSGATYNFITEAEARRLRLRWEKD 60
           MSSLQKK GERHVPTKGGLLYVDTWINQKQT+STMVDSGAT+NFITEAEARRLRLRWEKD
Sbjct: 171 MSSLQKKSGERHVPTKGGLLYVDTWINQKQTESTMVDSGATHNFITEAEARRLRLRWEKD 230

Query: 61  SRRMKAVNSVALPIVGLVKRTTIKFGGWKGPVDFVVVKMDDFDVVLGMEFLL 113
           S RMKA+NSVALPIVGLVKR TIK GGWKGPVDFV+VKM+DFDVVLGMEFLL
Sbjct: 231 SERMKAMNSVALPIVGLVKRMTIKLGGWKGPVDFVIVKMNDFDVVLGMEFLL 282

The following BLAST results are available for this feature:

BLAST of MELO3C033429 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040892.1	2.3e-51	92.86	uncharacterized protein E6C27_scaffold345G00520 [Cucumis melo var. makuwa]	[more]
KAA0035082.1	2.9e-51	93.69	uncharacterized protein E6C27_scaffold57G001510 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0066694.1	3.8e-51	91.96	uncharacterized protein E6C27_scaffold271G00270 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0054272.1	5.0e-51	91.07	uncharacterized protein E6C27_scaffold131G002280 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0043587.1	5.0e-51	91.96	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033429 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033429 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBQ6	1.1e-51	92.86	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SV15	1.4e-51	93.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VH79	1.9e-51	91.96	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CT27	2.4e-51	91.07	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TP81	2.4e-51	91.96	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of MELO3C033429 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13975	gag-asp_proteas	coord: 23..111 e-value: 9.6E-12 score: 45.3
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 22..111 e-value: 5.15736E-18 score: 70.8284
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 4..112 e-value: 6.0E-21 score: 76.6
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 17..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033429.1	MELO3C033429.1	mRNA