MELO3C033386.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033386.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCLP protease regulatory subunit CLPX2
Locationchr08: 23485204 .. 23485910 (-)
RNA-Seq ExpressionMELO3C033386.jh1
SyntenyMELO3C033386.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTCTTGTTATTCCTTGTTTAAGTGGCAGTTTGGTTTGGGTCAAAATGGAAGTAGAAAGATGCAAAATAGCGAAGACGCTTTACTGTATTTGATTCAACAAAGAATCCTTCCGTATAGAAGACGTGGAAGCTTGTGTCATATATCAGACACTCAACTCAAATGCTTCTTGAAGGAGATTTCAAAATTCTTGCATGGCTTTAAGAATGGTTTTCTTCTTCAAAACGGTTTTGATGATTTTGGAAATACAAGGCTCTTAAAATTTATGTGAAAAGTAGGTTGGGTTATCAGGTGTGTGGCTTGGAAGAGGAACAAAAAACTATCCTTCATCCATACATTGTTCTGGTGTCTCTCGACAGGATTGGAGATGTTTTCGAAAAATATTGGGAAGTTTCTTGATGAAGCACGATTATTCGATTTGGTACAGAAAACATCTCCAAACCTCCTTGCAACCTCCTTCCGAGTCACTAAGGACAAGTTATGCTGAAAAGATGATGCTTAATGGATCCCCTGTTCAGGAATTGGTAAAACATAGCACTTCTTCCTTTGTTCTGACCTTAGTAATTCAAAGTACAACTCAACATTGGGTGATTAAAAATCCGAAAGTTTTAAAAGAAGACTTCGATAATATATGGATTATTTCAAGATTATTTGCATTTGATGATTGGAAGAAAATTAGAAAAACCTTGGAGGATCTTTTACAATAA

mRNA sequence

TTGTTCTTGTTATTCCTTGTTTAAGTGGCAGTTTGGTTTGGGTCAAAATGGAAGTAGAAAGATGCAAAATAGCGAAGACGCTTTACTGTATTTGATTCAACAAAGAATCCTTCCGTATAGAAGACGTGGAAGCTTGTGTCATATATCAGACACTCAACTCAAATGCTTCTTGAAGGAGATTTCAAAATTCTTGCATGGCTTTAAGAATGGTTTTCTTCTTCAAAACGGTTTTGATGATTTTGGAAATACAAGGCTCTTAAAATTTATGTGAAAAGTAGGTTGGGTTATCAGGTGTGTGGCTTGGAAGAGGAACAAAAAACTATCCTTCATCCATACATTGTTCTGGTGTCTCTCGACAGGATTGGAGATGTTTTCGAAAAATATTGGGAAGTTTCTTGATGAAGCACGATTATTCGATTTGGTACAGAAAACATCTCCAAACCTCCTTGCAACCTCCTTCCGAGTCACTAAGGACAAGTTATGCTGAAAAGATGATGCTTAATGGATCCCCTGTTCAGGAATTGGTAAAACATAGCACTTCTTCCTTTGTTCTGACCTTAGTAATTCAAAGTACAACTCAACATTGGGTGATTAAAAATCCGAAAGTTTTAAAAGAAGACTTCGATAATATATGGATTATTTCAAGATTATTTGCATTTGATGATTGGAAGAAAATTAGAAAAACCTTGGAGGATCTTTTACAATAA

Coding sequence (CDS)

ATGAAGCACGATTATTCGATTTGGTACAGAAAACATCTCCAAACCTCCTTGCAACCTCCTTCCGAGTCACTAAGGACAAGTTATGCTGAAAAGATGATGCTTAATGGATCCCCTGTTCAGGAATTGGTAAAACATAGCACTTCTTCCTTTGTTCTGACCTTAGTAATTCAAAGTACAACTCAACATTGGGTGATTAAAAATCCGAAAGTTTTAAAAGAAGACTTCGATAATATATGGATTATTTCAAGATTATTTGCATTTGATGATTGGAAGAAAATTAGAAAAACCTTGGAGGATCTTTTACAATAA

Protein sequence

MKHDYSIWYRKHLQTSLQPPSESLRTSYAEKMMLNGSPVQELVKHSTSSFVLTLVIQSTTQHWVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ
Homology
BLAST of MELO3C033386.jh1 vs. NCBI nr
Match: TYK07808.1 (CLP protease regulatory subunit CLPX2 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.45e-19
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1   MKHDYSIWYRKHLQTSLQPPSESLRTSYAEKMMLNGSPVQELVKHSTSSFVLTLVIQSTT 60
           MK DYSIWYRKH QTSLQ PSESL  SY EK+M NGS V+ELVK + SS +LT   QS T
Sbjct: 75  MKQDYSIWYRKHPQTSLQLPSESLGGSYVEKVMFNGSSVRELVKQTASSSILTSEFQSAT 134

Query: 61  QHW 63
           QHW
Sbjct: 135 QHW 137

BLAST of MELO3C033386.jh1 vs. NCBI nr
Match: KAA0047189.1 (hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739.1 hypothetical protein E5676_scaffold1280G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 4.57e-07
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 61  QHWVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ 102
           + WVI+N +V+  +F+N+WII++LFAFDD +KIRK LE+  Q
Sbjct: 49  KQWVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYFQ 90

BLAST of MELO3C033386.jh1 vs. NCBI nr
Match: TYJ99818.1 (kinesin heavy chain-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.56e-06
Identity = 20/40 (50.00%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 63  WVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ 102
           WVI+N +V   +F+++WI++++FAFDDW+ IRK+LE+  Q
Sbjct: 163 WVIRNAEVATTNFESLWIVTKVFAFDDWQMIRKSLEEYFQ 202

BLAST of MELO3C033386.jh1 vs. NCBI nr
Match: KAA0039127.1 (angio-associated migratory cell protein isoform X1 [Cucumis melo var. makuwa] >TYK26986.1 angio-associated migratory cell protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.89e-06
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 18  QPPSESLRTSYA-------EKMMLNGSPVQELVKHSTS-SFVLTLVIQSTTQHWVIKNPK 77
           Q  +E ++ SY+       E+M +N +  Q+ VK  T   +  +       + WVIKN +
Sbjct: 333 QSYAEKVKLSYSNELKEKSEQMKVNQALRQQEVKQVTGLPYTYSTPKVEYQKQWVIKNLE 392

Query: 78  VLKEDFDNIWIISRLFAFDDWKKIRKTLE 98
           V+   F+ +WI+++LF FDDW +IRK LE
Sbjct: 393 VVPTYFEQLWIVTKLFTFDDWWRIRKMLE 421

BLAST of MELO3C033386.jh1 vs. NCBI nr
Match: KAA0063745.1 (uncharacterized protein E6C27_scaffold1290G00310 [Cucumis melo var. makuwa] >TYK14948.1 uncharacterized protein E5676_scaffold437G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.07e-06
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 63  WVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ 102
           W+IKN +V   +F+++WI+++LFAFDD + IRK+LED  Q
Sbjct: 117 WMIKNAEVATTNFESLWIVTKLFAFDDLRMIRKSLEDYFQ 156

BLAST of MELO3C033386.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C9F1 (CLP protease regulatory subunit CLPX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001020 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.04e-20
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1   MKHDYSIWYRKHLQTSLQPPSESLRTSYAEKMMLNGSPVQELVKHSTSSFVLTLVIQSTT 60
           MK DYSIWYRKH QTSLQ PSESL  SY EK+M NGS V+ELVK + SS +LT   QS T
Sbjct: 75  MKQDYSIWYRKHPQTSLQLPSESLGGSYVEKVMFNGSSVRELVKQTASSSILTSEFQSAT 134

Query: 61  QHW 63
           QHW
Sbjct: 135 QHW 137

BLAST of MELO3C033386.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U128 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00090 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.21e-07
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 61  QHWVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ 102
           + WVI+N +V+  +F+N+WII++LFAFDD +KIRK LE+  Q
Sbjct: 49  KQWVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYFQ 90

BLAST of MELO3C033386.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BNW8 (Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00200 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.55e-07
Identity = 20/40 (50.00%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 63  WVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ 102
           WVI+N +V   +F+++WI++++FAFDDW+ IRK+LE+  Q
Sbjct: 163 WVIRNAEVATTNFESLWIVTKVFAFDDWQMIRKSLEEYFQ 202

BLAST of MELO3C033386.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DTH3 (Angio-associated migratory cell protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00580 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.40e-06
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 18  QPPSESLRTSYA-------EKMMLNGSPVQELVKHSTS-SFVLTLVIQSTTQHWVIKNPK 77
           Q  +E ++ SY+       E+M +N +  Q+ VK  T   +  +       + WVIKN +
Sbjct: 333 QSYAEKVKLSYSNELKEKSEQMKVNQALRQQEVKQVTGLPYTYSTPKVEYQKQWVIKNLE 392

Query: 78  VLKEDFDNIWIISRLFAFDDWKKIRKTLE 98
           V+   F+ +WI+++LF FDDW +IRK LE
Sbjct: 393 VVPTYFEQLWIVTKLFTFDDWWRIRKMLE 421

BLAST of MELO3C033386.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VD00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold437G00130 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.91e-06
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 63  WVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ 102
           W+IKN +V   +F+++WI+++LFAFDD + IRK+LED  Q
Sbjct: 117 WMIKNAEVATTNFESLWIVTKLFAFDDLRMIRKSLEDYFQ 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07808.11.45e-1969.84CLP protease regulatory subunit CLPX2 [Cucumis melo var. makuwa][more]
KAA0047189.14.57e-0754.76hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739... [more]
TYJ99818.11.56e-0650.00kinesin heavy chain-like [Cucumis melo var. makuwa][more]
KAA0039127.12.89e-0634.83angio-associated migratory cell protein isoform X1 [Cucumis melo var. makuwa] >T... [more]
KAA0063745.18.07e-0652.50uncharacterized protein E6C27_scaffold1290G00310 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9F17.04e-2069.84CLP protease regulatory subunit CLPX2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7U1282.21e-0754.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BNW87.55e-0750.00Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DTH31.40e-0634.83Angio-associated migratory cell protein isoform X1 OS=Cucumis melo var. makuwa O... [more]
A0A5A7VD003.91e-0652.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033386.jh1.t1MELO3C033386.jh1.t1mRNA