MELO3C033377.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033377.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr08: 22754535 .. 22757598 (-)
RNA-Seq Expression	MELO3C033377.jh1
Synteny	MELO3C033377.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGCGTGCCATGAATTTGTATCATGCCTTTTTTTTACTGTTAAATTGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCATGCCCCGAGACATGTCTGGACGAAGGAGGAGGAAGACACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCACAGTTGGTATGCATGATGGTGGAGAAACTACCTGGATGTCAGGTCCGAGCAGCAACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGTTGCAGCGTGCAGTGGCTTTGGGTGGAACAATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAAGGTAAGGAAAATAATTTAAACGTCACACAACGTTTACAATGTATATTTACTTAACAATTTTTCAATCAGTACTCATACGTGATATTTTTTTTGCTTGCAGTCGCATTCTATAGCGAAGGGACTCCTCAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGATCGCGATAGGGCGACCGGTCGCTTCGCTGAGACATTCGCGAACGTCGGGTCTAACGAGCCTGGTGGCGGATATGGCAGATTTGATATGGGGGATGGAAACGATGAGTTCCCGCCCGTGTACAGCCAGTGGATTGACCTCTTGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGAACCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGTGGAGTGGCCTGCACGCAACCTTGCAAATGACAACCATGTGCGCACGAAATTCTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAATGCATCTTTTGTCTCGTATGGACGACCTTTGGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAGTTTATGTTTCTACGGACCTGGGTTGCTTATTATTTCCTTACGTTTTTTTGTCTATCATGTTGACTATTTATGCATTTCCTATTGTAAAGAACTTATTTTCGTCCTTGCTAATGTTTATTTTAAATTAAGGAAAATAGTCACAATTTCTCAAAAGCGTTATAACGGCTATTTATATAGGTTTAAAATAGGAGGACATCGCTATCGCCGATTAGAAATATTAAATAATCTTTTTATCTTTCTAAAAAATGAATTGTAATAAATTTCTCACAATATGTTCAGAAATTAATTTTAATTTGGACAATTGTATGTACTAATTTAATAACATTACACATACAACAAATTATTTGCAATAAGACGGATTCGAGGGTTTCATAAAAAAGTATGCAATAATTTTTTTTTTATCATATTTACAATCTAATTTAAAAAATATTATACCACATAAAAAAAGTTATTAACCCGACCCATTTAACAATTTTCCCAAATAAAATTTATCATAAAATCCACATAAACCTACCCACCTAATCCTTCCCCCAAACACATTTTATCATAAAATTCCCATAAAACTACCCATCTAACCCTTCCTAAAAACACATATTATCATAAAACTACATTTTTAAACCCTTCCCCCAAACAAGAGTTATGATAAAACTAGGTTTAACTTAACACTAGTTTTATCTTTAACACTAACCCTACCCTATAAATCAACCCTCCCCCAAACGCAACTAAGGATTATTTTCTGAACTAATTTTTGAACTCCCTCCAAGGATTATTTTCTCTCAAACCACATTCTCTCTCTACCGAAAACGCAAATGCAAAGCATATTCTCTCTCTCCACCGAAAACGCAAACGCAAAACACATTCTTTCTCTCTACCGAAAACGCAACTCGCCGGCGATTCCGCTCTAGCCACCCACCGATTCCACTACAGCCACCCGCCGATTCCACTACAGCCACCCGCCGATTCCACTACAGCCACCCGCCGCCGTCGATTCCACTCCAGCCACTGCCGTCAAATAAAGGGTTGCAACGCCGTCTACGTATTTGCTTCGCCGTTCGGTACTTCTCCTCCGGTACAAGATCTTCCGCCGTCCGGTGCTTTATTCCATTCGTGCTCTTTATCTTTTGTTCGTTTCCTTCACTCTCTTTTCTCCCGTTTGTATTTTTTTTCTGAAATTTGAGTTACTTGATTGCTATTTTAAGTGTGTATGCTTTGTAATCTTTGTATTCAAATTAAGTATGATTTGGGTGTACGAATTTGCTCAATATTTTTAGCTAATATTAAGGCTCTCATATTTTCCACTTTCTGATGCATATCAGTAGGCTAGATGAATACTTTCTTTTGATATCAGTTGGCTTCATTACCTGTGAAGGCTTTGGTTAACGGAGCTTCCATGTTTTATTATTATACTCAGTAAGCATTCGCTTCTTACTATGATTATCATGTTGCCTATCTTAAATTAAAGTACAGCAAATTAAACTTTTTATGTATTACTATTTTGTCTCTGATGAATTGTTCTAGTCATTACTTCTCGCTGTTTTGTTTATCAGAACAATTGAGTCAGTGATCGTTTTCTGTCACTTCATAAATTTACGTTAATTGCATTCCAAATTTCTGTACACGAAAGTAGAAAATAAACCAGTCAATGGAAATGTACCAAAATCAGTAGACCAAAGTAGGAACGAAATCAGTCAATGGAATGCATCTGAAATCAGTAGAAATAAATCAGTGAATCGAAAAGTAACGAAATCGGCGAATGGAAATCAGCCACAAAATGTATGAGATGTAACATAAGCATTCAGATGTATGTGCATACAGGTAAAGATCTACTCATCATCGGCTTGTGTTTGAAAATAGTAGGATTCAAACATAAGAATACCTCTCTACCATGCTCAATTTAGACCTATTGCTAGCCAAGACCAAGAAGCACCTGTTCTACATCATT

mRNA sequence

ATGTACGCGTGCCATGAATTTGTATCATGCCTTTTTTTTACTGTTAAATTGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCATGCCCCGAGACATGTCTGGACGAAGGAGGAGGAAGACACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCACAGTTGGTATGCATGATGGTGGAGAAACTACCTGGATGTCAGGTCCGAGCAGCAACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGTTGCAGCGTGCAGTGGCTTTGGGTGGAACAATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAAGTCGCATTCTATAGCGAAGGGACTCCTCAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGATCGCGATAGGGCGACCGGTCGCTTCGCTGAGACATTCGCGAACGTCGGGTCTAACGAGCCTGGTGGCGGATATGGCAGATTTGATATGGGGGATGGAAACGATGAGTTCCCGCCCGTGTACAGCCAGTGGATTGACCTCTTGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGACGTATTTGCTTCGCCGTTCGGTACTTCTCCTCCGGTACAAGATCTTCCGCCGTCCGGATTCAAACATAAGAATACCTCTCTACCATGCTCAATTTAGACCTATTGCTAGCCAAGACCAAGAAGCACCTGTTCTACATCATT

Coding sequence (CDS)

ATGTCAACCTCAAATCATGCCCCGAGACATGTCTGGACGAAGGAGGAGGAAGACACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCACAGTTGGTATGCATGATGGTGGAGAAACTACCTGGATGTCAGGTCCGAGCAGCAACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGTTGCAGCGTGCAGTGGCTTTGGGTGGAACAATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAAGTCGCATTCTATAGCGAAGGGACTCCTCAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGATCGCGATAGGGCGACCGGTCGCTTCGCTGAGACATTCGCGAACGTCGGGTCTAACGAGCCTGGTGGCGGATATGGCAGATTTGATATGGGGGATGGAAACGATGAGTTCCCGCCCGTGTACAGCCAGTGGATTGACCTCTTGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGACGTATTTGCTTCGCCGTTCGGTACTTCTCCTCCGGTACAAGATCTTCCGCCGTCCGGATTCAAACATAAGAATACCTCTCTACCATGCTCAATTTAGACCTATTGCTAGCCAAGACCAAGAAGCACCTGTTCTACATCAT

Protein sequence

MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQVRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKGLLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQWIDLLQDDVRASRPSRASEGRTGSTYLLRRSVLLLRYKIFRRPDSNIRIPLYHAQFRPIASQDQEAPVLHH

Homology

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BLAST of MELO3C033377.jh1 vs. NCBI nr
Match: KAA0034933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 420 bits (1080), Expect = 2.80e-146
Identity = 200/204 (98.04%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSNHAPRHVWTKEEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLP CQ
Sbjct: 1   MSTSNHAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPECQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSH IAKG
Sbjct: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHPIAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW
Sbjct: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           IDLLQDDVRASRPSRASEGRTGS+
Sbjct: 181 IDLLQDDVRASRPSRASEGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 383 bits (983), Expect = 2.96e-131
Identity = 181/204 (88.73%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRASEGRTGS+
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 383 bits (983), Expect = 2.96e-131
Identity = 181/204 (88.73%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRASEGRTGS+
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 382 bits (980), Expect = 8.46e-131
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRAS+GRTGS+
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 382 bits (980), Expect = 8.46e-131
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRAS+GRTGS+
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SWL9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00650 PE=4 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 1.36e-146
Identity = 200/204 (98.04%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSNHAPRHVWTKEEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLP CQ
Sbjct: 1   MSTSNHAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPECQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSH IAKG
Sbjct: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHPIAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW
Sbjct: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           IDLLQDDVRASRPSRASEGRTGS+
Sbjct: 181 IDLLQDDVRASRPSRASEGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 383 bits (983), Expect = 1.43e-131
Identity = 181/204 (88.73%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRASEGRTGS+
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 383 bits (983), Expect = 1.43e-131
Identity = 181/204 (88.73%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRASEGRTGS+
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 382 bits (980), Expect = 4.09e-131
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRAS+GRTGS+
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 382 bits (980), Expect = 4.09e-131
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSTSNHAPRHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQ 60
           MSTSN APRHVWT+EEE TLVECLMELVSMGGWKSDNGTFRPGYLAQLV MM EKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRAATVIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKG 120
           VRA TVIDCRIKTLKRTFQAIAEMR  ACSGFGWN+EEKCI+AEKELFDNWV+SH  AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFDRDRATGRFAETFANVGSNEPGGGYGRFDMGDGNDEFPPVYSQW 180
           LLNKPFPYYDELTYVF RDRATGRFAETFA+VGSNEPGGGY RFDMGDGN++FPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLLQDDVRASRPSRASEGRTGST 204
           +D+ QDDVRASRPSRAS+GRTGS+
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSS 204

[Close]

BLAST of MELO3C033377.jh1 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-09
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 12  WTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQVRAATVIDCRI 71
           W+ EE   LV+ L+E ++   W+  NGT     +       + K   C+ +       R+
Sbjct: 17  WSPEETKLLVQLLVEGIN-NNWRDSNGTISKLTVETKFMPEINK-EFCRSKNYNHYLSRM 76

Query: 72  KTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKGLLNKPFPYYDE 131
           K LK  +Q+  +++    SGFGW+   K   A  E++ +++K+H   K L    F ++DE
Sbjct: 77  KYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDE 136

Query: 132 LTYVFDRDRATGRFA 147
           L  +F    ATG+ A
Sbjct: 137 LQIIFGEGVATGKNA 148

[Close]

BLAST of MELO3C033377.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 22/67 (32.84%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 66  VIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKGLLNKP 125
           V+  R K+L+R F AI    +    GF W+NE + + A+  ++ +++K+H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKS--ILRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 126 FPYYDEL 133
            PYY +L
Sbjct: 296 IPYYKDL 300

[Close]

BLAST of MELO3C033377.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 22/67 (32.84%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 66  VIDCRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKGLLNKP 125
           V+  R K+L+R F AI    +    GF W+NE + + A+  ++ +++K+H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKS--ILRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 126 FPYYDEL 133
            PYY +L
Sbjct: 296 IPYYKDL 300

[Close]

BLAST of MELO3C033377.jh1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-06
Identity = 34/137 (24.82%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 9   RHVWTKEEEDTLVECLMELVSMGGWKSDNGTFRPGYLAQLVCMMVEKLPGCQVRAATVID 68
           R  WT   +  L++ L+E V+ G       TF      ++V     K  G Q     V+ 
Sbjct: 324 RIFWTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQ-HNKDVLK 383

Query: 69  CRIKTLKRTFQAIAEMRVAACSGFGWNNEEKCIIAEKELFDNWVKSHSIAKGLLNKPFPY 128
            R K L+R +  I  +     +GF W+     +IA+ ++++ ++++H  A+    K  P 
Sbjct: 384 NRYKHLRRLYNDIKFL--LEQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPS 443

Query: 129 YDELTYVFDRDRATGRF 146
           Y  L ++F ++ + GR+
Sbjct: 444 YPNLCFIFGKETSDGRY 454

The following BLAST results are available for this feature:

BLAST of MELO3C033377.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034933.1	2.80e-146	98.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033744.1	2.96e-131	88.73	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]
TYK21395.1	2.96e-131	88.73	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]
TYJ96194.1	8.46e-131	88.24	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0031555.1	8.46e-131	88.24	retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon...	[more]

BLAST of MELO3C033377.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033377.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWL9	1.36e-146	98.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	1.43e-131	88.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.43e-131	88.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CWL2	4.09e-131	88.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCN9	4.09e-131	88.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C033377.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	2.3e-09	28.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	2.8e-07	32.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.8e-07	32.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	4.0e-06	24.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..110 e-value: 5.2E-8 score: 33.8
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..152
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 4..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033377.jh1.t1	MELO3C033377.jh1.t1	mRNA