Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATCATGTTTTCAATTGCATTGCCGTTTCCAAACATGGTGCATCTGTATGCGACTGTGAGTAAGGTAGATTTGGCCATAAACTTAAATATAGAGTAGGAATATGTTGAAGAATATGTTGATGTTGACTTGGAGTCAGATGCACAACCAGTGTGCCATGAAGAAGAAATGGTAGCTAACAACGAATACAGAGAGTTTAGAACAGAAACTAATGGTGAATTCAAAGAGATGCACTTCGATGGCCGTGAATATGAAGTTCCATCCAATACATTCACTGAGTTGGACATGAATGCAGTAGATAACATTTAAGAACACGATCCAATTATAGTTTCGATGGTGACTGACAACACGAAATTGTACAAGGAAATGATTTGTGAAAACAAAGAAATGTTGCAACATATGGTTAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTAGAGTCAACACTGACAAAGTGAGTCATCCGATGTATGAAGTCGAACGAAGGTTGCAGATGGAGACTTCGTGCAATAATGAAAAAATCTCATG
mRNA sequence
ATGAACATCATGTTTTCAATTGCATTGCCGTTTCCAAACATGGTGCATCTGTATGCGACTGTGAGTAAGGTAGATTTGGCCATAAACTTAAATATAGAGTAGGAATATGTTGAAGAATATGTTGATGTTGACTTGGAGTCAGATGCACAACCAGTGTGCCATGAAGAAGAAATGGTAGCTAACAACGAATACAGAGAGTTTAGAACAGAAACTAATGGTGAATTCAAAGAGATGCACTTCGATGGCCGTGAATATGAAGTTCCATCCAATACATTCACTGAGTTGGACATGAATGCAGTAGATAACATTTAAGAACACGATCCAATTATAGTTTCGATGGTGACTGACAACACGAAATTGTACAAGGAAATGATTTGTGAAAACAAAGAAATGTTGCAACATATGGTTAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTAGAGTCAACACTGACAAAGTGAGTCATCCGATGTATGAAGTCGAACGAAGGTTGCAGATGGAGACTTCGTGCAATAATGAAAAAATCTCATG
Coding sequence (CDS)
ATGGTAGCTAACAACGAATACAGAGAGTTTAGAACAGAAACTAATGGTGAATTCAAAGAGATGCACTTCGATGGCCGTGAATATGAAGTTCCATCCAATACATTCACTGAGTTGGACATGAATGCAGTAGATAACATTTAA
Protein sequence
MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI
Homology
BLAST of MELO3C033142 vs. NCBI nr
Match:
KAA0047088.1 (uncharacterized protein E6C27_scaffold466G00530 [Cucumis melo var. makuwa] >TYK05067.1 uncharacterized protein E5676_scaffold1317G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI
Sbjct: 32 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 77
BLAST of MELO3C033142 vs. NCBI nr
Match:
TYJ97998.1 (uncharacterized protein E5676_scaffold487G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVANNEYREFRTET+ EF+EMHF+GREYEVPSNTF ELDMNAVD+I
Sbjct: 7 MVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSI 52
BLAST of MELO3C033142 vs. NCBI nr
Match:
KAA0053568.1 (uncharacterized protein E6C27_scaffold190G001350 [Cucumis melo var. makuwa] >TYK19159.1 uncharacterized protein E5676_scaffold522G00860 [Cucumis melo var. makuwa])
HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVANNEYRE RTE + EFK+MHFDGREYEVPSNTFTELDMNAVD+I
Sbjct: 1 MVANNEYRELRTEIDDEFKKMHFDGREYEVPSNTFTELDMNAVDSI 46
BLAST of MELO3C033142 vs. NCBI nr
Match:
TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVA NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 58 MVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 103
BLAST of MELO3C033142 vs. NCBI nr
Match:
TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 76.6 bits (187), Expect = 6.1e-11
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
M+A NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 1 MIATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 46
BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match:
A0A5D3BZT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00370 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI
Sbjct: 32 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 77
BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match:
A0A5D3BII2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00210 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVANNEYREFRTET+ EF+EMHF+GREYEVPSNTF ELDMNAVD+I
Sbjct: 7 MVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSI 52
BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match:
A0A5D3D6H6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00860 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVANNEYRE RTE + EFK+MHFDGREYEVPSNTFTELDMNAVD+I
Sbjct: 1 MVANNEYRELRTEIDDEFKKMHFDGREYEVPSNTFTELDMNAVDSI 46
BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match:
A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
MVA NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 58 MVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 103
BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 1 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
M+A NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 1 MIATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 46
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0047088.1 | 3.3e-17 | 100.00 | uncharacterized protein E6C27_scaffold466G00530 [Cucumis melo var. makuwa] >TYK0... | [more] |
| TYJ97998.1 | 1.7e-13 | 86.96 | uncharacterized protein E5676_scaffold487G00210 [Cucumis melo var. makuwa] | [more] |
| KAA0053568.1 | 2.2e-13 | 86.96 | uncharacterized protein E6C27_scaffold190G001350 [Cucumis melo var. makuwa] >TYK... | [more] |
| TYK23115.1 | 4.6e-11 | 80.43 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK27427.1 | 6.1e-11 | 78.26 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BZT0 | 1.6e-17 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BII2 | 8.3e-14 | 86.96 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3D6H6 | 1.1e-13 | 86.96 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DHR2 | 2.3e-11 | 80.43 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DUI1 | 2.9e-11 | 78.26 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
