Sequences
The following sequences are available for this feature:
Legend: exon start_codon CDS polypeptide stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATG CTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGCCCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAAGTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCTAAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCCTCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAGACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA
ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGCCCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAAGTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCTAAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCCTCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAGACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA
ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGCCCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAAGTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCTAAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCCTCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAGACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA
MLVGRERLEQRMELLKVVQDPLGAKSLSQNFPVVSPQKEVQKTWAIKEPILKWREKKKKVPKRERKNAGEVEVQPLERKENFSTEHTSLPIRIPSISTNGRQVLAKSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRKRVKEALEKVR
Homology
BLAST of MELO3C032776.jh1 vs. NCBI nr
Match:
TYK28320.1 (transportin-3 isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 82.4 bits (202), Expect = 7.89e-15
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 0
BLAST of MELO3C032776.jh1 vs. NCBI nr
Match:
TYJ97217.1 (putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 54.3 bits (129), Expect = 6.37e-05
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of MELO3C032776.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3DYJ4 (Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001480 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 3.82e-15
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 0
BLAST of MELO3C032776.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3BDL5 (Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00040 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.08e-05
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
TYK28320.1 7.89e-15 70.15 transportin-3 isoform X2 [Cucumis melo var. makuwa] [more] TYJ97217.1 6.37e-05 67.35 putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumi... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5D3DYJ4 3.82e-15 70.15 Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more] A0A5D3BDL5 3.08e-05 67.35 Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucu... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
A T G C T T G T C G G A A G A G A G A G G C T A G A A C A G C G C A T G G A G T T G T T G A A A G T A G T C C A A G A T C C T C T T G G C G C G A A A A G C C T C T C T C A A A A T T T T C C A G T A G T A A G C C C C C A G A A G G A A G T C C A A A A G A C A T G G G C C A T T A A A G A G C C G A T T T T A A A G T G G A G A G A G A A G A A G A A A A A G G T C C C T A A A A G A G A A A G G A A A A A T G C A G G G G A A G T T G A A G T G C A A C C C T T G G A G A G A A A A G A G A A T T T T T C A A C T G A A C A T A C T T C A T T G C C A A T T A G A A T T C C A A G T A T C A G C A C A A A T G G A A G G C A A G T C C T T G C T A A G T C A C T T C C C T C A T C C T C G T C A A A G T C T T T T G C T T T C A T C T A C A C T G C A G A T T C T G T G C C C A C T G A A A T C C C C T C T G A A A A A A C T C C A T C T C C C A A C T C T T C C T C T G T T G C T C T T T C T T C T T C T T C C C T C T T T C C C T C G A C C A A A T A T G G G T C G A A G G T T A A G T C T A A A A A A C A T C C A A A A T C A A G G A T T C T C C C A C A T C C C T T C A A G A C T T T T C C A A A G C A T T T T G T T A G A A G A A A A A G G G T T A A A G A G G C C T T A G A A A A A G T T C G C T A A 50 100 150 200 250 300 350 400 450 500 550 Score = Score = Score = Score = Score = Sequence Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 184..195 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 127..155 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 64..84 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 57..84 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 127..175
Relationships
The following mRNA feature(s) are a part of this gene:
