MELO3C032776.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032776.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTransportin-3 isoform X2
Locationchr07: 19319044 .. 19319631 (+)
RNA-Seq ExpressionMELO3C032776.jh1
SyntenyMELO3C032776.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGCCCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAAGTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCTAAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCCTCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAGACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA

mRNA sequence

ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGCCCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAAGTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCTAAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCCTCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAGACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA

Coding sequence (CDS)

ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGCCCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAAGTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCTAAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCCTCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAGACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA

Protein sequence

MLVGRERLEQRMELLKVVQDPLGAKSLSQNFPVVSPQKEVQKTWAIKEPILKWREKKKKVPKRERKNAGEVEVQPLERKENFSTEHTSLPIRIPSISTNGRQVLAKSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRKRVKEALEKVR
Homology
[Close]
BLAST of MELO3C032776.jh1 vs. NCBI nr
Match: TYK28320.1 (transportin-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 7.89e-15
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 126 PTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRK 185
           P  +P  K  S NSSSVALSSSSL    K  SK KS+KHPKSR LPHP KTFPKHFVRRK
Sbjct: 68  PDSVPLVKARSSNSSSVALSSSSLSSLAKSRSKAKSRKHPKSRALPHPVKTFPKHFVRRK 127

Query: 186 RVKEALE 192
           RVKE L+
Sbjct: 128 RVKEGLK 134

[Close]
BLAST of MELO3C032776.jh1 vs. NCBI nr
Match: TYJ97217.1 (putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.37e-05
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 116 FAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKH 164
           FAFI  A S+PT IPS K P+ NSSS  LSSSSL  S K GSK KSKKH
Sbjct: 99  FAFIPIAGSMPTNIPSGKAPTSNSSSAGLSSSSLSSSAKSGSKAKSKKH 147

[Close]
BLAST of MELO3C032776.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DYJ4 (Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001480 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.82e-15
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 126 PTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRK 185
           P  +P  K  S NSSSVALSSSSL    K  SK KS+KHPKSR LPHP KTFPKHFVRRK
Sbjct: 68  PDSVPLVKARSSNSSSVALSSSSLSSLAKSRSKAKSRKHPKSRALPHPVKTFPKHFVRRK 127

Query: 186 RVKEALE 192
           RVKE L+
Sbjct: 128 RVKEGLK 134

[Close]
BLAST of MELO3C032776.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BDL5 (Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00040 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.08e-05
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 116 FAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKH 164
           FAFI  A S+PT IPS K P+ NSSS  LSSSSL  S K GSK KSKKH
Sbjct: 99  FAFIPIAGSMPTNIPSGKAPTSNSSSAGLSSSSLSSSAKSGSKAKSKKH 147

The following BLAST results are available for this feature:
BLAST of MELO3C032776.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK28320.17.89e-1570.15transportin-3 isoform X2 [Cucumis melo var. makuwa][more]
TYJ97217.16.37e-0567.35putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumi... [more]
BLAST of MELO3C032776.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032776.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DYJ43.82e-1570.15Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3BDL53.08e-0567.35Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucu... [more]
BLAST of MELO3C032776.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032776.jh1.t1MELO3C032776.jh1.t1mRNA